Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12258
- Subject:
- XR_001748802.1
- Aligned Length:
- 3418
- Identities:
- 1405
- Gaps:
- 2011
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTAGATCTCTTAAAAAGATGGACCCTCAGCGGCGCTTCCTCGTAGCGAGCCTAGTGGCGGGTGTTTGCATTGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AACGTGAGCGCGACCCGACCTTAAAGAGTGGGGAGCAAAGGGAGGACAGAGCCCTTTAAAACGAGGCGGGTGGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCCTGCCCCTTTAAGGGCGGGGCGTCCGGACGACTGTATCTGAGCCCCAGACTGCCCCGAGTTTCTGTCGCAGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTGCGAGGAAAGGCCCCTAGGCTGGGTCTGGGTGCTTGGCGGCGGCGGCTTCCTCCCCGCTCGTCCTCCCCGGG 296
Query 1 --------------------------------------ATGGAAGCACCTGACTACGAAGTGCTATCCGTGCGA 36
||||||||||||||||||||||||||||||||||||
Sbjct 297 CCCAGAGGCACCTCGGCTTCAGTCATGCTGAGCAGAGTATGGAAGCACCTGACTACGAAGTGCTATCCGTGCGA 370
Query 37 GAACAGCTATTCCACGAGAGGATCCGCGAGTGTATTATATCAACACTTCTGTTTGCAACACTGTACATCCTCTG 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GAACAGCTATTCCACGAGAGGATCCGCGAGTGTATTATATCAACACTTCTGTTTGCAACACTGTACATCCTCTG 444
Query 111 CCACATCTTCCTGACCCGCTTCAAGAAGCCTGCTGAGTTCACCACAGTGGATGATGAAGATGCCACCGTCAACA 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCACATCTTCCTGACCCGCTTCAAGAAGCCTGCTGAGTTCACCACAGTGGATGATGAAGATGCCACCGTCAACA 518
Query 185 AGATTGCGCTCGAGCTGTGCACCTTTACCCTGGCAATTGCCCTGGGTGCTGTCCTGCTCCTGCCCTTCTCCATC 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AGATTGCGCTCGAGCTGTGCACCTTTACCCTGGCAATTGCCCTGGGTGCTGTCCTGCTCCTGCCCTTCTCCATC 592
Query 259 ATCAGCAATGAGGTGCTGCTCTCCCTGCCTCGGAACTACTACATCCAGTGGCTCAACGGCTCCCTCATCCATGG 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATCAGCAATGAGGTGCTGCTCTCCCTGCCTCGGAACTACTACATCCAGTGGCTCAACGGCTCCCTCATCCATGG 666
Query 333 CCTCTGGAACCTTGTTTTTCTCTTCTCCAACCTGTCCCTCATCTTCCTCATGCCCTTTGCATATTTCTTCACTG 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CCTCTGGAACCTTGTTTTTCTCTTCTCCAACCTGTCCCTCATCTTCCTCATGCCCTTTGCATATTTCTTCACTG 740
Query 407 AGTCTGAGGGCTTTGCTGGCTCCAGAAAGGGTGTCCTGGGCCGGGTCTATGAGACAGTGGTGATGTTGATGCTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGTCTGAGGGCTTTGCTGGCTCCAGAAAGGGTGTCCTGGGCCGGGTCTATGAGACAGTGGTGATGTTGATGCTC 814
Query 481 CTCACTCTGCTGGTGCTAGGTATGGTGTGGGTGGCATCAGCCATTGTGGACAAGAACAAGGCCAACAGAGAGTC 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTCACTCTGCTGGTGCTAGGTATGGTGTGGGTGGCATCAGCCATTGTGGACAAGAACAAGGCCAACAGAGAGTC 888
Query 555 ACTCTATGACTTTTGGGAGTACTATCTCCCCTACCTCTACTCATGCATCTCCTTCCTTGGGGTTCTGCTGCTCC 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ACTCTATGACTTTTGGGAGTACTATCTCCCCTACCTCTACTCATGCATCTCCTTCCTTGGGGTTCTGCTGCTCC 962
Query 629 TGTTGTGTACTCCACTGGGTCTCGCCCGCATGTTCTCCGTCACTGGGAAGCTGCTAGTCAAGCCCCGGCTGCTG 702
||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGGTGTGTACTCCACTGGGTCTCGCCCGCATGTTCTCCGTCACTGGGAAGCTGCTAGTCAAGCCCCGGCTGCTG 1036
Query 703 GAAGACCTGGAGGAGCAGCTGTACTGCTCAGCCTTTGAGGAGGCAGCCCTGACCCGCAGGATCTGTAATCCTAC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GAAGACCTGGAGGAGCAGCTGTACTGCTCAGCCTTTGAGGAGGCAGCCCTGACCCGCAGGATCTGTAATCCTAC 1110
Query 777 TTCCTGCTGGCTGCCTTTAGACATGGAGCTGCTACACAGACAGGTCCTGGCTCTGCAGACACAGAGGGTCCTGC 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TTCCTGCTGGCTGCCTTTAGACATGGAGCTGCTACACAGACAGGTCCTGGCTCTGCAGACACAGAGGGTCCTGC 1184
Query 851 TGGAGAAGAGGCGGAAGGCTTCAGCCTGGCAACGGAACCTGGGCTACCCCCTGGCTATGCTGTGCTTGCTGGTG 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGGAGAAGAGGCGGAAGGCTTCAGCCTGGCAACGGAACCTGGGCTACCCCCTGGCTATGCTGTGCTTGCTGGTG 1258
Query 925 CTGACGGGCCTGTCTGTGCTCATTGTGGCCATCCACATCCTGGAGCTGCTCATCGATGAGGCTGCCATGCCCCG 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CTGACGGGCCTGTCTGTGCTCATTGTGGCCATCCACATCCTGGAGCTGCTCATCGATGAGGCTGCCATGCCCCG 1332
Query 999 AGGCATGC------------------------------------------------------------------ 1006
||||||||
Sbjct 1333 AGGCATGCAGCAAACCTGTCTCCTGGGACTCTAGACCGAGCACTTCTTGGACTTTGTCTCCTTTGGGACTCTGA 1406
Query 1007 -------------------------------------------------------------------------- 1006
Sbjct 1407 GCAACGCTGATGGGAAGTGGGGCAAGTTTTCATCAACCTCAGGTTCAGAAAGAAGGAAAAGACTTAATTTGAAA 1480
Query 1007 -------------------------------------------------------------------------- 1006
Sbjct 1481 GGAGGGCTGGTGGTTCAGTAGAATCTGATCAGAAGAAAATAAAAAGAGGCCAGGTGCAGTGGCTCACACCTGTA 1554
Query 1007 -------------------------------------------------------------------------- 1006
Sbjct 1555 ATCCTAGCACTTTGGGAGGCTGAGGCGGGTAGATTGCTTGAGTTTAGGATTTCAAGACCAGCCTGAGCAACATG 1628
Query 1007 -------------------------------------------------------------------------- 1006
Sbjct 1629 GTGAAACCCGGCCTCTACAAAAAGTACAAAAAATTAGCCAGACGTGGTGGTGCGTGCTTGCATTCCCAGCTACG 1702
Query 1007 ------------------------------------------AGGTTGTA------------------------ 1014
||||||.|
Sbjct 1703 TGGGAGGCTGACGTGGGAAGATCGCTTAAGCCCAGAAGGTCAAGGTTGCAGTGAGCTGAAATCGCACCACTGCA 1776
Query 1015 -------------------------------CTCA--------------------------------------- 1018
||||
Sbjct 1777 CTCCAGCCTGGGTGACAAAGTGAGACCCTGTCTCAAAAAAAAAAAAAGAAGTGGGCTGGGAGAGAGCTCTGTTC 1850
Query 1019 ---------------------TCTT----------------------------------TTACCTAATGGTGTC 1037
|||| |||||||||||||||
Sbjct 1851 CCTTTGAGATGAGTTATTAATTCTTGGAGCCAGCCAGTTCTTCCTTAATGCAGTGGCAGTTACCTAATGGTGTC 1924
Query 1038 CTCAGTTGTGGGCTTCTATAGCTCTCCACTCTTCCGGAGCCTGCGGCCCAGATGGCACGACACTGCCATGACGC 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 CTCAGTTGTGGGCTTCTATAGCTCTCCACTCTTCCGGAGCCTGCGGCCCAGATGGCACGACACTGCCATGACGC 1998
Query 1112 AGATAATTGGGAACTGTGTCTGTCTCCTGGTCCTAAGCTCAGCACTTCCTGTCTTCTCTCGAACCCTGGGGCTC 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 AGATAATTGGGAACTGTGTCTGTCTCCTGGTCCTAAGCTCAGCACTTCCTGTCTTCTCTCGAACCCTGGGGCTC 2072
Query 1186 ACTCGCTTTGACCTGCTGGGTGACTTTGGACGCTTCAACTGGCTGGGCAATTTCTACATTGTGTTCCTCTACAA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 ACTCGCTTTGACCTGCTGGGTGACTTTGGACGCTTCAACTGGCTGGGCAATTTCTACATTGTGTTCCTCTACAA 2146
Query 1260 CGCAGCCTTTGCAGGCCTCACCACACTCTGTCTGGTGAAGACCTTCACTGCAGCTGTGCGGGCAGAGCTGATCC 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 CGCAGCCTTTGCAGGCCTCACCACACTCTGTCTGGTGAAGACCTTCACTGCAGCTGTGCGGGCAGAGCTGATCC 2220
Query 1334 GGGCCTTTGGGCTGGACAGACTGCCGCTGCCCGTCTCCGGTTTCCCCCAGGCATCTAGGAAGACCCAGCACCAG 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 GGGCCTTTGGGCTGGACAGACTGCCGCTGCCCGTCTCCGGTTTCCCCCAGGCATCTAGGAAGACCCAGCACCAG 2294
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 2295 TGACCTCCAGCTGGGGGTGGGAAGGAAAAAACTGGACACTGCCATCTGCTGCCTAGGCCTGGAGGGAAGCCCAA 2368
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 2369 GGCTACTTGGACCTCAGGACCTGGAATCTGAGAGGGTGGGTGGCAGAGGGGAGCAGAGCCATCTGCACTATTGC 2442
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 2443 ATAATCTGAGCCAGAGTTTGGGACCAGGACCTCCTGCTTTTCCATACTTAACTGTGGCCTCAGCATGGGGTAGG 2516
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 2517 GCTGGGTGACTGGGTCTAGCCCCTGATCCCAAATCTGTTTACACATCAATCTGCCTCACTGCTGTTCTGGGCCA 2590
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 2591 TCCCCATAGCCATGTTTACATGATTTGATGTGCAATAGGGTGGGGTAGGGGCAGGGAAAGGACTGGGCCAGGGC 2664
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 2665 AGGCTCGGGAGATAGATTGTCTCCCTTGCCTCTGGCCCAGCAGAGCCTAAGCACTGTGCTATCCTGGAGGGGCT 2738
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 2739 TTGGACCACCTGAAAGACCAAGGGGATAGGGAGGAGGAGGCTTCAGCCATCAGCAATAAAGTTGATCCCAGGGT 2812
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 2813 TTGCTTTGTTTTTTTAAAGCACCTGTCTCTGTGTATATTTGAACAGCCTTGCTCCCACCAGCCCGGCGTCTGCC 2886
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 2887 CAGTAAGAGAAGCAGAGGGGTCCTGCCCACCATCCTTTTCCTTCCCCTTCATCTATATTATTACCATCCTTTGG 2960
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 2961 GGACTTGGATCTGGTGTTAGGCCATGCAGTTGGGCAGTGGGAAACTCCTCCATCCTCAGTCTTGCTTAAAGCTG 3034
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 3035 GCTTGTCCCCTGACTCCTCCTTATATTCATGGCCTTGTTTCTGTACCTTGAGTATTGGGGGTAGGACATGGGCA 3108
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 3109 TAGGAGTAGGCTAACCTCCCCGATACACTCATACCTTCAGCCCTATCCTCCCTGGCTTAACTATTGGATATAGA 3182
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 3183 GTAAAATAAGTGGCTGGCTGACAAGGATTTTCATTTCCTACCTGAGAGAAGAATCTAGCTTTTTACTAGAGGCC 3256
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 3257 ATCAGTTTCTTGAAAAGCCCATGTGCTATGTTGGGAGTAAGAGCGCAAAACTTAGGCTTATACAGATTGTGTAT 3330
Query 1408 -------------------------------------------------------------------------- 1407
Sbjct 3331 TGCACAGCTTCCAGGGACACCATTCACCTCATAGTCATTGTGTGGATAGTTACTATGATAGTTTTCTAATAAAT 3404
Query 1408 -------------- 1407
Sbjct 3405 GTCAGTCATCTTGA 3418
