Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12268
- Subject:
- XR_931617.1
- Aligned Length:
- 3720
- Identities:
- 834
- Gaps:
- 2886
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTAACGGACTCGAGCTCCTCCCACCGGAAGTGGGCAGCCGCGCAGCGGGAAGAGCCGGCCGAAGCGTGGCGGC 74
Query 1 ---------------------------------------------------ATGGCGCCAGCGAAAGCCACGAA 23
|||||||||||||||||||||||
Sbjct 75 CACAGACTGTGGGTACCGGGTCCGAGGGACTCGCGCTTTTCTCTCCGTGCCATGGCGCCAGCGAAAGCCACGAA 148
Query 24 CGTGGTGCGGCTGCTACTAGGCTCCACAGCGCTGTGGCTTTCGCAGCTCGGCTCCGGGACGGTCGCCGCGTCCA 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CGTGGTGCGGCTGCTACTAGGCTCCACAGCGCTGTGGCTTTCGCAGCTCGGCTCCGGGACGGTCGCCGCGTCCA 222
Query 98 AGTCGGTGACTGCCCACTTGGCCGCGAAGTGGCCCGAGACCCCGCTGCTGCTGGAGGCAAGTGAATTTATGGCA 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AGTCGGTGACTGCCCACTTGGCCGCGAAGTGGCCCGAGACCCCGCTGCTGCTGGAGGCAAGTGAATTTATGGCA 296
Query 172 GAAGAAAGTAATGAAAAATTTTGGCAGTTTTTGGAAACTGTGCAAGAATTAGCAATTTATAAGCAAACAGAATC 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GAAGAAAGTAATGAAAAATTTTGGCAGTTTTTGGAAACTGTGCAAGAATTAGCAATTTATAAGCAAACAGAATC 370
Query 246 AGATTATTCTTATTACAACTTAATCCTGAAGAAAGCTGGACAGTTTCTAGACAATTTACACATCAACCTTTTAA 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AGATTATTCTTATTACAACTTAATCCTGAAGAAAGCTGGACAGTTTCTAGACAATTTACACATCAACCTTTTAA 444
Query 320 AGTTTGCTTTCTCTATAAGGGCATACTCCCCAGCTATTCAGATGTTTCAGCAGATTGCAGCTGATGAGCCACCA 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AGTTTGCTTTCTCTATAAGGGCATACTCCCCAGCTATTCAGATGTTTCAGCAGATTGCAGCTGATGAGCCACCA 518
Query 394 CCAGATGGTTGTAATGCATTTGTGGTTATTCATAAGAAGCACACCTGTAAAATTAATGAGATTAAAAAGCTGCT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CCAGATGGTTGTAATGCATTTGTGGTTATTCATAAGAAGCACACCTGTAAAATTAATGAGATTAAAAAGCTGCT 592
Query 468 GAAGAAAGCTGCTTCAAGGACTAGACCTTATCTATTTAAAGGAGATCACAAATTTCCTACAAACAAAGAGAACT 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GAAGAAAGCTGCTTCAAGGACTAGACCTTATCTATTTAAAGGAGATCACAAATTTCCTACAAACAAAGAGAACT 666
Query 542 TACCAGTGGTGATTCTCTATGCCGAAATGGGTACTAGAACATTTAGTGCATTTCACAAAGTATTGTCTGAAAAA 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TACCAGTGGTGATTCTCTATGCCGAAATGGGTACTAGAACATTTAGTGCATTTCACAAAGTATTGTCTGAAAAA 740
Query 616 GCTCAAAATGAGGAAATTCTGTATGTTCTTCGCCATTATATTCAGAAACCAAGCTCACGGAAAATGTACTTATC 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GCTCAAAATGAGGAAATTCTGTATGTTCTTCGCCATTATATTCAGAAACCAAGCTCACGGAAAATGTACTTATC 814
Query 690 TGGGTATGGTGTGGAGCTAGCAATTAAGAGTACAGAATACAAAGCACTGGATGATACCCAAGTTAAAACTGTGA 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TGGGTATGGTGTGGAGCTAGCAATTAAGAGTACAGAATACAAAGCACTGGATGATACCCAAGTTAAAACTGTGA 888
Query 764 CTAATACTACTGTAGAGGATGAGACTGAAACAAATGAAGTTCAAGGATTTCTCTTTGGGAAACTAAA------- 830
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CTAATACTACTGTAGAGGATGAGACTGAAACAAATGAAGTTCAAGGATTTCTCTTTGGGAAACTAAAAGAAATA 962
Query 831 -------ATCT--------------------------------------------------------------- 834
||||
Sbjct 963 TATTCAGATCTTAGAGATAATCTGACAGCATTCCAAAAATACCTGATTGAGAGTAACAAACAAATGATGCCTTT 1036
Query 835 -------------------------------------------------------------------------- 834
Sbjct 1037 GAAAGTCTGGGAACTACAAGATCTTAGTTTTCAAGCAGCTTCTCAAATAATGTCCGCTCCAGTTTATGATTCCA 1110
Query 835 -------------------------------------------------------------------------- 834
Sbjct 1111 TTAAATTAATGAAAGACATTTCACAGAACTTCCCCATAAAAGCCAGATCTCTAACCAGAATTGCTGTAAATCAA 1184
Query 835 -------------------------------------------------------------------------- 834
Sbjct 1185 CATATGAGAGAAGAAATAAAGGAAAATCAAAAGGATCTTCAAGTTAGATTTAAAATTCAGCCAGGCGATGCTCG 1258
Query 835 -------------------------------------------------------------------------- 834
Sbjct 1259 TCTATTTATAAATGGCCTTCGTGTTGATATGGATGTTTATGACGCTTTTAGTATTTTGGATATGCTGAAATTAG 1332
Query 835 -------------------------------------------------------------------------- 834
Sbjct 1333 AAGGAAAAATGATGAATGGCCTTCGCAATCTTGGGATCAATGGGGAAGATATGAGCAAATTTTTAAAATTAAAT 1406
Query 835 -------------------------------------------------------------------------- 834
Sbjct 1407 TCACACATTTGGGAATATACTTATGTATTAGATATTCGACATTCTTCTATAATGTGGATTAATGACTTAGAAAA 1480
Query 835 -------------------------------------------------------------------------- 834
Sbjct 1481 TGATGATTTGTATATTACATGGCCTACAAGTTGCCAGAAACTTCTGAAGCCAGTATTTCCTGGAAGTGTACCTT 1554
Query 835 -------------------------------------------------------------------------- 834
Sbjct 1555 CCATAAGGCGCAATTTTCATAATTTGGTTCTGTTTATTGATCCGGCCCAAGAATATACCTTGGATTTTATAAAA 1628
Query 835 -------------------------------------------------------------------------- 834
Sbjct 1629 CTTGCTGATGTTTTCTATTCTCACGAAGTTCCTCTTAGAATTGGTTTTGTGTTCATTCTTAATACAGATGATGA 1702
Query 835 -------------------------------------------------------------------------- 834
Sbjct 1703 AGTTGATGGAGCAAATGATGCTGGAGTTGCTCTCTGGCGAGCTTTCAACTATATTGCAGAAGAATTTGATATAT 1776
Query 835 -------------------------------------------------------------------------- 834
Sbjct 1777 CAGAAGCATTTATTTCTATAGTACACATGTACCAAAAAGTGAAGAAGGATCAAAATATACTCACTGTGGACAAT 1850
Query 835 -------------------------------------------------------------------------- 834
Sbjct 1851 GTGAAGAGTGTTCTCCAAAATACATTTCCTCATGCTAATATTTGGGATATTTTGGGAATTCATTCTAAATATGA 1924
Query 835 -------------------------------------------------------------------------- 834
Sbjct 1925 TGAAGAAAGAAAGGCTGGAGCAAGCTTTTATAAGATGACTGGCCTGGGTCCTTTGCCTCAAGCTCTTTATAATG 1998
Query 835 -------------------------------------------------------------------------- 834
Sbjct 1999 GTGAACCCTTTAAACATGAAGAGATGAATATTAAAGAACTAAAAATGGCTGTTCTTCAAAGAATGATGGATGCA 2072
Query 835 -------------------------------------------------------------------------- 834
Sbjct 2073 TCTGTATATTTACAAAGAGAAGTTTTTTTGGGCACATTAAATGATCGCACGAATGCAATTGATTTTCTAATGGA 2146
Query 835 -------------------------------------------------------------------------- 834
Sbjct 2147 TAGGAATAATGTTGTACCCCGTATAAATACTTTGATTTTGCGTACTAACCAGCAGTACCTCAATTTAATATCTA 2220
Query 835 -------------------------------------------------------------------------- 834
Sbjct 2221 CATCAGTAACTGCTGATGTTGAAGATTTCTCTACTTTCTTTTTCTTGGATTCACAAGATAAGAGTGCTGTAATT 2294
Query 835 -------------------------------------------------------------------------- 834
Sbjct 2295 GCAAAGAACATGTATTATTTAACCCAAGACGATGAGAGTATAATTTCTGCAGTCACTCTCTGGATTATTGCAGA 2368
Query 835 -------------------------------------------------------------------------- 834
Sbjct 2369 TTTTGATAAGCCTTCTGGGAGAAAACTTCTTTTTAATGCATTAAAGCACATGAAAACAAGTGTTCATAGTCGGT 2442
Query 835 -------------------------------------------------------------------------- 834
Sbjct 2443 TGGGGATTATTTATAATCCTACATCAAAAATAAATGAAGAGAACACAGCTATTTCTAGAGGAATTTTGGCAGCT 2516
Query 835 -------------------------------------------------------------------------- 834
Sbjct 2517 TTTCTTACACAGAAGAACATGTTTTTGAGAAGCTTTCTTGGGCAACTGGCAAAGGAAGAAATTGCTACAGCTAT 2590
Query 835 -------------------------------------------------------------------------- 834
Sbjct 2591 TTACTCTGGAGATAAAATTAAAACATTCCTTATTGAGGGGATGGATAAGAATGCTTTTGAGAAAAAATATAATA 2664
Query 835 -------------------------------------------------------------------------- 834
Sbjct 2665 CTGTTGGAGTGAATATTTTTCGAACTCACCAGTTGTTCTGTCAAGATGTACTTAAATTACGTCCTGGAGAAATG 2738
Query 835 -------------------------------------------------------------------------- 834
Sbjct 2739 GGTATTGTCAGCAATGGGAGATTCTTAGGACCTTTAGATGAAGATTTTTATGCAGAAGATTTTTACTTGTTGGA 2812
Query 835 -------------------------------------------------------------------------- 834
Sbjct 2813 AAAGATAACATTTAGTAATTTAGGAGAGAAAATTAAAGGCATTGTTGAAAATATGGGAATCAACGCAAATAACA 2886
Query 835 -------------------------------------------------------------------------- 834
Sbjct 2887 TGAGTGACTTTATTATGAAAGTTGATGCCCTTATGTCCTCTGTGCCTAAGCGTGCATCTCGATATGATGTCACA 2960
Query 835 -------------------------------------------------------------------------- 834
Sbjct 2961 TTTCTTAGGGAGAATCACAGTGTTATAAAGACGAATCCTCAAGAGAATGATATGTTCTTCAATGTCATTGCTAT 3034
Query 835 -------------------------------------------------------------------------- 834
Sbjct 3035 TGTTGATCCATTAACAAGAGAAGCACAGAAAATGGCACAGTTGTTGGTTGTACTTGGCAAGATTATCAACATGA 3108
Query 835 -------------------------------------------------------------------------- 834
Sbjct 3109 AGATAAAGTTGTTCATGAACTGTAGGGGCAGGCTTTCAGAAGCCCCTTTAGAAAGAGGGGACAAAAATATACCC 3182
Query 835 -------------------------------------------------------------------------- 834
Sbjct 3183 TTTCTCTTCTTTGTGGATCAGAATCACTGTCATTCATTATGAGCCATTCTTATTGATGGGAATATTCAGTTCTC 3256
Query 835 -------------------------------------------------------------------------- 834
Sbjct 3257 CTTCATGTGTCATTGGGCAGAAAACAGGCTTTTACCGTTTTGTTCTGGAACCAGAACTGATGTCAGGGGCTAAT 3330
Query 835 -------------------------------------------------------------------------- 834
Sbjct 3331 GACGTTTCTTCTCTTGGACCAGTGGCAAAATTTTTGGATATTCCTGAATCACCCCTCCTAATCCTCAACATGAT 3404
Query 835 -------------------------------------------------------------------------- 834
Sbjct 3405 TACTCCAGAAGGCTGGTTGGTTGAAACAGTGCACAGCAACTGTGACCTTGATAATATTCACTTAAAGGATACTG 3478
Query 835 -------------------------------------------------------------------------- 834
Sbjct 3479 AGAAAACTGTTACAGCAGAATATGAACTAGAATACTTACTACTGGAAGGACAATGCTTTGATAAAGTGACAGAA 3552
Query 835 -------------------------------------------------------------------------- 834
Sbjct 3553 CAGCCTCCTCGGGGTCTGCAGTTCACACTAGGCACAAAAAATAAACCTGCTGTGGTTGATACAATAGTGATGGC 3626
Query 835 -------------------------------------------------------------------------- 834
Sbjct 3627 ACATCATGGGTATTTTCAATTAAAAGCAAACCCAGGTGCTTGGATACTGAGGTTACACCAAGGAAAATCTGAAG 3700
Query 835 -------------------- 834
Sbjct 3701 ATATTTATCAAATAGTTGGG 3720
