Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12290
- Subject:
- XR_001778835.1
- Aligned Length:
- 5422
- Identities:
- 1122
- Gaps:
- 4132
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTAGCGTAATCTCTGGGTGCATTTTCTTTGATCCGTATCTTACTTTCCATGGCATATAAAATGTTCGCAGGAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AACGACTTTTTTCTTTTATCCGACCCCTTCCTCAATTTAGAAGTTCTGTTAGCTCACTGATTCTTTGGTTTTTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTTGCTGCTGCTGGCTGCTGTAAGGGAGCGGGAACTTGGGCGGGACCCCTGGAGGTTTCTTTGACCTGTTACCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGACCGGGCCAATGGCAACGCGGGCTGCCGGCAAGCACCAATCCCGCTGCTAACCCTCACCCCGCCACCAACCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAGTCCGGGCGCCAGAGCCCTCGGGGGAAGGGAGCCGTGGCACTCGGGAAAACTTCTGCACAAGATGGCCAGGC 370
Query 1 --------------------------------------------------------ATGGCGGTGGCCGAGCTG 18
|||||||||||||||||.
Sbjct 371 GCTGAGTGCCTGGGCGCGCACAGTCCCCTGCAGCAACAGCAGCAGAGAGGAGGTCCATGGCGGTGGCCGAGCTC 444
Query 19 TACACGCAGTACAACAGGGTCTGGATTCCCGATCCTGAAGAAGTTTGGAAGTCTGCTGAAATAGCCAAGGACTA 92
|||.||||||||||||||||.|||||.||.||||||||.||||||||||||||.||||||||.||.||||||||
Sbjct 445 TACGCGCAGTACAACAGGGTTTGGATCCCAGATCCTGAGGAAGTTTGGAAGTCGGCTGAAATCGCAAAGGACTA 518
Query 93 CAGAGTTGGTGACAAGGTCCTGCGACTCCTGCTGGAGGATGGAACGGAGCTGGATTATTCTGTCAATCCAGAAT 166
|||||..||||||...|||||..||||.||||||||||||||.|.|||||||||.||..||||..|.||||..|
Sbjct 519 CAGAGCGGGTGACCGAGTCCTCAGACTTCTGCTGGAGGATGGCATGGAGCTGGAATACCCTGTTGACCCAGGGT 592
Query 167 CTCTGCCTCCACTTCGGAATCCTGACATCCTCGTGGGCGAGAATGACCTCACGGCTCTCAGCTATCTTCACGAG 240
|.||||||||.||||||||.|||||||||||.|||||.||||||||||||||.||.||||||||.||.||.|||
Sbjct 593 CACTGCCTCCGCTTCGGAACCCTGACATCCTGGTGGGTGAGAATGACCTCACAGCCCTCAGCTACCTCCATGAG 666
Query 241 CCCGCGGTGCTCCACAACCTCAGAATCCGCTTTGCAGAATCCAAACTCATTTACACCTACAGTGGAATCATTTT 314
|||||.|||||.||.||.||||||||||||||.|||||.|||||||||||.|||||||||||||||||||||||
Sbjct 667 CCCGCAGTGCTGCATAATCTCAGAATCCGCTTCGCAGAGTCCAAACTCATCTACACCTACAGTGGAATCATTTT 740
Query 315 GGTGGCCATGAATCCTTACAAGCAGTTGCCAATATACGGAGATGCCATCATCCACGCCTACAGCGGGCAGAACA 388
|||||||||||||||||||||.|||.|.|||||||||||.||||||||||||||||||||||||||.|||||||
Sbjct 741 GGTGGCCATGAATCCTTACAAACAGCTACCAATATACGGGGATGCCATCATCCACGCCTACAGCGGACAGAACA 814
Query 389 TGGGCGATATGGACCCACACATATTTGCCGTGGCAGAAGAGGCATACAAGCAGATGGCCAGAAACAACAGAAAC 462
||||.||.||||||||||||||.|||||.||.|||||.|||||.|||||||||||||||||.|||||.|||||.
Sbjct 815 TGGGTGACATGGACCCACACATCTTTGCGGTTGCAGAGGAGGCCTACAAGCAGATGGCCAGGAACAATAGAAAT 888
Query 463 CAGTCCATAATTGTAAGTGGGGAGTCAGGTGCTGGAAAGACAGTGTCGGCTCGCTATGCCATGAGGTACTTTGC 536
|||||||||||.||.|||||.||.|||||.||.||.|||||.||.||.||.||||||||||||||||||||.||
Sbjct 889 CAGTCCATAATCGTGAGTGGAGAATCAGGAGCCGGGAAGACTGTCTCTGCACGCTATGCCATGAGGTACTTCGC 962
Query 537 CACCGTCAGCAAATCGGGCAGCAACGCTCACGTGGAAGACAAGGTCCTGGCATCCAATCCCATCACCGAGGCCG 610
.|||||||||||||||.|||||||.||.||.|||||.|||||.|||.||||||||||||||||.||.|||||.|
Sbjct 963 TACCGTCAGCAAATCGAGCAGCAATGCCCATGTGGAGGACAAAGTCTTGGCATCCAATCCCATAACTGAGGCTG 1036
Query 611 TTGGAAATGCCAAGACCACCCGCAATGACAATAGTAGTCGGTTTGGGAAATACACAGAAATCAGTTTTGATGAA 684
|||||||||||||||||||||||||||||||.||.|||||||||||||||||||||||.|||||.||||||||.
Sbjct 1037 TTGGAAATGCCAAGACCACCCGCAATGACAACAGCAGTCGGTTTGGGAAATACACAGAGATCAGCTTTGATGAG 1110
Query 685 CAAAATCAAATTATAGGAGCCAACATGAGCACTTACCTCCTGGAGAAATCCAGAGTTGTCTTTCAATCGGAAAA 758
..|||.||.||.||.||.|||||.|||||.|||||||||||||||||.|||||||||||||||||.||.|||||
Sbjct 1111 AGAAACCAGATCATTGGCGCCAATATGAGAACTTACCTCCTGGAGAAGTCCAGAGTTGTCTTTCAGTCAGAAAA 1184
Query 759 TGAACGAAATTACCACATTTTCTATCAGCTTTGTGCATCTGCACAGCAGTCGGAATTTAAACATCTTAAATTGG 832
||||||.|||||||||||.|||||.||||||||||||||.|||||||||||.|||||||||||.||||||.|||
Sbjct 1185 TGAACGGAATTACCACATCTTCTACCAGCTTTGTGCATCCGCACAGCAGTCAGAATTTAAACACCTTAAACTGG 1258
Query 833 GGAGTGCCGAAGAATTTAATTATACAAGAATGGGAGGCAATACTGTCATTGAGGGTGTGAATGATCGAGCTGAA 906
|||||||.|||||.||.||.||.||||||||||||||.||.|||||||||||.|||||.|||||..|||||||.
Sbjct 1259 GGAGTGCGGAAGAGTTCAACTACACAAGAATGGGAGGTAACACTGTCATTGAAGGTGTCAATGACAGAGCTGAC 1332
Query 907 ATGGTAGAGACTCAAAAGACCTTCACGCTTCTGGGTTTCAAGGAGGATTTTCAGATGGACGTTTTTAAAATCCT 980
|||||.|||||.||.|||||||||||.||.|||||.||||||.|.||||||||.|||||.||||||||.|||||
Sbjct 1333 ATGGTGGAGACCCAGAAGACCTTCACACTACTGGGATTCAAGAAAGATTTTCAAATGGATGTTTTTAAGATCCT 1406
Query 981 GGCAGCCATCCTACATCTGGGCAACGTGCAGATCACCGCGGTGGGCAACGAGAGGTCCTCAGTTAGTGAGGATG 1054
.||.||||||||.||.||||||||.||||||.|||||.|||||||||||||||||||.|||||.||||||||||
Sbjct 1407 AGCTGCCATCCTGCACCTGGGCAATGTGCAGGTCACCACGGTGGGCAACGAGAGGTCTTCAGTCAGTGAGGATG 1480
Query 1055 ACAGTCACCTGAAGGTGTTCTGTGAGCTCCTGGGCCTGGAGAGTGGCAGAGTTGCTCAGTGGCTGTGCAATCGC 1128
|||||||||||||||||||||||||||||.||||||||||||...|||.|||.|||||||||||||||||..|.
Sbjct 1481 ACAGTCACCTGAAGGTGTTCTGTGAGCTCTTGGGCCTGGAGACCAGCAAAGTGGCTCAGTGGCTGTGCAACAGA 1554
Query 1129 AAAATCGTCACAAGCTCTGAGACGGTGGTAAAACCCATGACCAGGCCTCAGGCTGTCAACGCCAGGGATGCACT 1202
|||||.||.||...|||.||.||.||||||||.||||||||||||||||||||..||||||||||||||||.||
Sbjct 1555 AAAATTGTGACCTCCTCGGAAACTGTGGTAAAGCCCATGACCAGGCCTCAGGCCATCAACGCCAGGGATGCGCT 1628
Query 1203 GGCCAAAAAGATCTATGCTCACCTGTTCGACTTCATTGTGGAGAGAATTAACCAAGCGTTGCAGTTTTCA---- 1272
|||||||||||||||.|||||||||||||||||||||||.|||..|||.|||||.||||||||.||.|||
Sbjct 1629 GGCCAAAAAGATCTACGCTCACCTGTTCGACTTCATTGTCGAGCAAATCAACCAGGCGTTGCACTTCTCAGGCA 1702
Query 1273 ------------------------------------GTTTTGAAACCTTTGATG-------------------- 1290
|||||||.||||||||||
Sbjct 1703 AGCAGCACACTTTTATTGGTGTTTTGGACATTTATGGTTTTGAGACCTTTGATGTAAACAGCTTTGAACAGTTC 1776
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1777 TGCATCAATTACGCTAATGAAAAACTACAGCAGCAGTTTAACCTGCACGTCTTTAAACTTGAGCAAGAGGAATA 1850
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1851 CATGAAAGAGGACATCCCCTGGACTCTGATAGACTTCTATGACAACCAGCCTGTTATTGACCTGATCGAGGCAA 1924
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1925 AAATGGGCATTTTGGAGTTGCTGGATGAAGAATGCTTGTTGCCTCATGGCACCGATGAAAACTGGCTTCAAAAG 1998
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1999 CTGTATAACAATTTTGTCAACAAGAACTCGTTATTCGAGAAGCCTAGAATGTCAAACTCATCCTTCATCATCCA 2072
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2073 ACATTTTGCTGACAAGGTGGAGTACCAATGTGAAGGGTTCCTGGAGAAGAACAGAGACACTGTCTATGACATGC 2146
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2147 TGGTGGAGATCCTCAGAGCAAGCAAGTTTCATCTCTGTGCCGCCTTTTTTCAAGAAAGCCCTGTTCCGTCTTCT 2220
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2221 CCCTTTGGGGCGATGATCACAGTTAAATCTGCAAAGCAGGTCATCAAGCCGAACACCAAGCACTTCCGGACCAC 2294
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2295 TGTTGGGAACAAGTTCCGCAGCTCTCTGTACTTGCTCATGGAAACCCTCAATGCCACCACACCCCACTACGTCC 2368
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2369 GTTGCATCAAGCCAAATGATGAGAAAATGCCCTTTGAGTTTGACTCCAAGCGGATTGTCCAGCAGCTGCGAGCC 2442
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2443 TGTGGCGTTTTAGAAACGATTCGCATCAGTGCCCAGAGCTACCCTTCCAGGTGGACATACCTCGAGTTCTATAG 2516
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2517 TCGCTATGGCATCCTCATGACCCAGCAGGAGCTGTCCCTCAGTGATAAGAAGGAGGTGTGCAAGGTGGTTCTGC 2590
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2591 ACAGGCTCATCCAGGATTCTAACCAGTACCAGTTTGGTAGAACCAAAATTTTCTTCAGAGCAGGACAAGTGGCT 2664
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2665 TACTTAGAGAAACTCCGCCTGGATAAACTGAGACAGGATTGTATTATGATCCAGAAACACGTGCGAGGCTGGCT 2738
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2739 GCAGAGGAGGAAGTTCCTCAGGGAGAGACAGGCTGCCCTGACAATCCAACGGTACTTCCGGGGTCAGCAGACAG 2812
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2813 TGAGGAAGGCCATCACTGCCACTGCTTTGAAGGAGGCCTGGGCGGCCATCATCCTCCAGAAGTATTGCCGAGGC 2886
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2887 TACCTGGTCCGTAACCTGTACCAGCTGATCCGTGTGGCCACCATCACCATCCAGGCACACACCAGGGGCTTCCT 2960
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2961 AGCCAGGAGGCGGTACCGGAAGTTGTTGCAGGAGCACAAGGCAGTGATCCTGCAGAAGTATGCGAGGGCCTGGC 3034
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 3035 TGGCCCGGCGCAGATTCCAGAACATCCGCAGGTTCGTGCTCAACATTCAGCTGACTTACAGGGTCCAGCGCTTG 3108
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 3109 CAGAAGAAGCTGGAGGATCAGAACAGAGAGAACCACGGGCTGGTGGAGAAGCTGACCAGCCTGGCCGCTCTGCG 3182
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 3183 GGTTGGCGATCTGGAAAAGGTTCAGAAGCTGGAAGCAGAGCTGGAAAAGGCAGCTACCCACCGGCACAGCTATG 3256
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 3257 AAGAGAAGGGCCGCAGATACAGGGACACAGTGGAGGAGAGGTTGTCAAAGCTGCAGAAGCACAATGCAGAGCTG 3330
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 3331 GAGCTGCAGAGAGAGCGAGCAGAGCAGATGCTGCAAGAGAAGTCTGAGGAGCTAAAAGAAAAAATGGACAAGCT 3404
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 3405 CACCAGGCAGCTGTTTGATGATGTGCAGAAAGAAGAACAGCAAAGACTAGTTCTTGAAAAAGGTTTTGAGCTGA 3478
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 3479 AAACACAAGCCTATGAGAAACAGATAGAGTCTCTGAGAGAAGAGATTAAAGCCCTCAAGGACGAGAGGTCGCAA 3552
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 3553 CTGCATCACCAGCTGGAGGAGGGACAGGTCACCTCTGACCGCCTGAAGGGGGAGGTGGCCCGCCTAAGCAAGCA 3626
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 3627 GGCAAAGACCATCTCTGAGTTTGAGAAGGAGATAGAGCTGCTGCAAGCCCAGAAGATAGATGTGGAAAAGCACG 3700
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 3701 TGCAGTCACAGAAACGGGAGATGAGAGAACGGATGTCAGAGGTCACCAAGCAGCTTTTGGAGAGCTATGACATC 3774
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 3775 GAAGATGTTAGAAGCAGGCTCTCTGTGGAAGATCTGGAACATTTAAATGAAGATGGAGAACTTTGGTTTGCCTA 3848
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 3849 CGAAGGACTAAAGAAAGCAACTCGAGTTCTGGAGAGCCATTTCCAGTCTCAGAAGGATTGCTATGAAAAAGAGA 3922
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 3923 TTGAAGGTCTGAACTTCAAAGTCGTGCACCTGAGCCAAGAGATCAACCACCTGCAGAAGCTGTTCAGAGAAGAG 3996
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 3997 ACAGACATCAACGAAAGTATCCGGCATGAAGTCACCAGGCTGACATCAGAAAACATGCCACTACTTTCTGTTAT 4070
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 4071 GTGCTTCTCAGCAACCTGTGGCAATGCTGGCTACTCCCCTGCCTCTGAGATTGCAGAGGATCACACTCGCTGTG 4144
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 4145 GCTACTTCTTCCGTCTCACTATCTGCTGTGGCTTTGCTTCTTTCCTCCTTCTCTGGCCAAACCATAAGTTGGGA 4218
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 4219 CATCCCCGGGGCGTCTACAGGAGCTGGAACTGTGCTGCAGTCAAAGGCCTTCGTAGGATGTGTATTCCTGGGAT 4292
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 4293 AAACCTTGATGAGGAACCAACAGTGAGGTATTCTGTGTGTTTGGGCCTCAGAGGCCTGTTTAAACTTAAGAGAA 4366
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 4367 CAGAAAGAAGAAAAAAAAAGCAACTCTTTTTATCTGGCTGGGTGTGGAAGGGATGAATATTCAAAAAGATACAC 4440
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 4441 AACAAAGGAGAATGGAGAGCCCCGGACGACTCCAGCTGCAGAGTGTTCTGAGATAGTGTGCCGTCCTCTTCCAG 4514
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 4515 GTGAGATGGCACTGCCAGGACCTGGAGCAGCTCAGCACAAGGCACCCTTCCCTTCCCACAATGCACCTCTTTCC 4588
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 4589 TTCCCAGGATAGCCATGTGAGAACTGCTCTCTCTGAGCATGCTGGGATTTCTTGAGACCACTACAAAGGTCTTC 4662
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 4663 AGATGAAGGGGGAGGGGATGGAATGTCAACGAATCCCAGTGTCTCCGCTGGCCTCTCACACAGCCCATGTACTC 4736
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 4737 CACACGCTGAACAAGGAGATGGGTGTCTTGGAGAGCATAAACATTCAGGCTCAAGCATTAATTAATCTCTCTCC 4810
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 4811 TCTGAAGATGATCCCAGACTTTAAGCAGCAGATTTCAGAGCTGGAGAGGCAGAAGCAGGATCTTGAATCCCGCC 4884
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 4885 TGAAGGAGCAGGCTGAGAAGATAGAAGGAAAGCTGGAAGAGCCGTTCAGCCACCTGAACCGAATCCGAGAAGAG 4958
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 4959 GAGAGAATGCAGGGCAGGGCCGTGGAAGCACAGAGTGAGATGCATCCAGAAGGGAAGGAGAGGCTGGTGGGTGC 5032
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 5033 GATCCACGAACCGCATGAAGCCATCAAGTTCCCAAAGAAGCAACCAGAAGCTGAGGAGGAAGTCGAGAGTATTC 5106
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 5107 TCCAACAAGAAGCGTCCCGGCTCTCTTTGGAAAAGAGGGATCTCGAGGAAGAGTTAGACATGAAGGACAGAATG 5180
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 5181 ATTAGAAGGCTACAAGATCAAGTCAAGACTCTGACCAAGACGACTGAGAAAGCCAACCATGTGCACCTGCCCTC 5254
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 5255 GGGATCCAGGGAGTACCTGGGGATGCTGGAATACAAGAAAGAAGATGAGGGGAAGCTCATTCAAAACCTCATTC 5328
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 5329 TTGACCTGAAGCCCCGAGGTGTGGTGGTGAACATGATCCCAGGGCTGCCAGCTCACATCCTGTTCATGTGCGTG 5402
Query 1291 -------------------- 1290
Sbjct 5403 CGATACGCGGACTCCCTAAA 5422
