Nucleotide Global Alignment

Description

• Query: ccsbBroad304_12306
• Subject: NR_148521.2
• Aligned Length: 3902
• Identities: 1448
• Gaps: 2450

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGAGAGCAGAGAGCGAGCGGAGAGCGAGGTGTAGAGAAACCGAGGGGGAGAGAACCCGAGTGTGTGTATGCGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGCGTGTGTGAGCGCGAGCGAGCGAGAGAGAGGAGCGAGAGAGTGTGAGCGAGAAAGAATAAAAGGAAAGAAG  148

Query    1  ---------ATGTATATAAAGATGGCCACGTTAGCAAACGGACAGGCTGACAACGCAAGCCTCAGTACCAACGG  65
                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ATTTTCTCTATGTATATAAAGATGGCCACGTTAGCAAACGGACAGGCTGACAACGCAAGCCTCAGTACCAACGG  222

Query   66  GCTCGGCAGCAGCCCGGGCAGTGCCGGGCACATGAACGGATTAAGCCACAGCCCGGGGAACCCGTCGACCATTC  139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GCTCGGCAGCAGCCCGGGCAGTGCCGGGCACATGAACGGATTAAGCCACAGCCCGGGGAACCCGTCGACCATTC  296

Query  140  CCATGAAGGACCATGATGCCATCAAGCTGTTCATTGGGCAGATCCCCCGCAACCTGGATGAGAAGGACCTCAAG  213
            |||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CCATGAAGGACCACGATGCCATCAAGCTGTTCATTGGGCAGATCCCCCGCAACCTGGATGAGAAGGACCTCAAG  370

Query  214  CCCCTCTTCGAGGAGTTTGGCAAAATCTACGAGCTTACGGTTCTGAAGGACAGGTTCACAGGCATGCACAAAGG  287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CCCCTCTTCGAGGAGTTTGGCAAAATCTACGAGCTTACGGTTCTGAAGGACAGGTTCACAGGCATGCACAAAGG  444

Query  288  CTGCGCCTTCCTCACCTACTGCGAGCGTGAGTCAGCGCTGAAGGCCCAGAGCGCGCTGCACGAGCAGAAGACTC  361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CTGCGCCTTCCTCACCTACTGCGAGCGTGAGTCAGCGCTGAAGGCCCAGAGCGCGCTGCACGAGCAGAAGACTC  518

Query  362  TGCCCGGGATGAACCGGCCGATCCAGGTGAAGCCTGCGGACAGCGAGAGCCGAGGAGGTAGTAGCTGCCTGCGC  435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TGCCCGGGATGAACCGGCCGATCCAGGTGAAGCCTGCGGACAGCGAGAGCCGAGGAGGTAGTAGCTGCCTGCGC  592

Query  436  CAGCCCCCTTCAC---ATAGAAAACTCTTCGTGGGCATGCTCAACAAGCAACAGTCCGAGGACGACGTGCGCCG  506
            |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CAGCCCCCTTCACAAGATAGAAAACTCTTCGTGGGCATGCTCAACAAGCAACAGTCCGAGGACGACGTGCGCCG  666

Query  507  CCTTTTCGAGGCCTTTGGGAACATCGAGGAGTGCACCATCCTGCGCGGGCCCGACGGCAACAGCAAGGGGTGCG  580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CCTTTTCGAGGCCTTTGGGAACATCGAGGAGTGCACCATCCTGCGCGGGCCCGACGGCAACAGCAAGGGGTGCG  740

Query  581  CCTTTGTGAAGTACTCCTCCCACGCCGAGGCGCAGGCCGCCATCAACGCGCTACACGGCAGCCAGACCATGCCG  654
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CCTTTGTGAAGTACTCCTCCCACGCCGAGGCGCAGGCCGCCATCAACGCGCTACACGGCAGCCAGACCATGCCG  814

Query  655  GGAGCCTCGTCCAGTCTGGTGGTCAAGTTCGCCGACACCGACAAGGAGCGCACGATGCGGCGAATGCAGCAGAT  728
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GGAGCCTCGTCCAGTCTGGTGGTCAAGTTCGCCGACACCGACAAGGAGCGCACGATGCGGCGAATGCAGCAGAT  888

Query  729  GGCTGGCCAGATGGGCATGTTCAACCCCATGGCCATCCCTTTCGGGGCCTACGGCGCCTACGCTCAGGCACTGA  802
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GGCTGGCCAGATGGGCATGTTCAACCCCATGGCCATCCCTTTCGGGGCCTACGGCGCCTACGCTCAGGCACTGA  962

Query  803  TGCAGCAGCAAGCGGCCCTGATGGCATCAGTCGCGCAGGGCGGCTACCTGAACCCCATGGCTGCCTTCGCTGCC  876
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TGCAGCAGCAAGCGGCCCTGATGGCATCAGTCGCGCAGGGCGGCTACCTGAACCCCATGGCTGCCTTCGCTGCC  1036

Query  877  GCCCAGATGCAGCAGATGGCGGCCCTCAACATGAATGGCCTGGCGGCCGCACCTATGACCCCAACCTCAGGTGG  950
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  GCCCAGATGCAGCAGATGGCGGCCCTCAACATGAATGGCCTGGCGGCCGCACCTATGACCCCAACCTCAGGTGG  1110

Query  951  CAGCACCCCTCCGGGCATCACTGCACCAGCCGTGCCTAGCATCCCATCCCCCATTGGGGTGAATGGCTTCACCG  1024
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CAGCACCCCTCCGGGCATCACTGCACCAGCCGTGCCTAGCATCCCATCCCCCATTGGGGTGAATGGCTTCACCG  1184

Query 1025  GCCTCCCCCCACAGGCCAATGGGCAACCTGCTGCGGAAGCTGTGTTCGCCAATGGCATCCACCCCTACCCAGCA  1098
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GCCTCCCCCCACAGGCCAATGGGCAACCTGCTGCGGAAGCTGTGTTCGCCAATGGCATCCACCCCTACCCAGCA  1258

Query 1099  CAGAGCCCCACCGCCGCGGACCCCCTGCAGCAGGCCTACGCCGGAGTGCAGCAGTATGCAGCAGCTGCCTACCC  1172
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||...||||||||||
Sbjct 1259  CAGAGCCCCACCGCCGCGGACCCCCTGCAGCAGGCCTACGCCGGAGTGCAGCAGTATGCAGGTCCTGCCTACCC  1332

Query 1173  TGCTGCCTATGGTCAGATAAGCCAGGCCTTTCCTCAGCCGCCTCCAATGATCCCCCAGCAGCAGAGAGAAGGGC  1246
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  TGCTGCCTATGGTCAGATAAGCCAGGCCTTTCCTCAGCCGCCTCCAATGATCCCCCAGCAGCAGAGAGAAGGGC  1406

Query 1247  CCGAGGGCTGTAACCTGTTCATCTACCATCTGCCCCAGGAGTTTGGGGACGCTGAGCTGATGCAGATGTTCCTC  1320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CCGAGGGCTGTAACCTGTTCATCTACCATCTGCCCCAGGAGTTTGGGGACGCTGAGCTGATGCAGATGTTCCTC  1480

Query 1321  CCTTTCGGCTTCGTGAGCTTCGACAACCCGGCCAGCGCGCAGACCGCCATCCAGGCCATGAACGGCTTCCAGAT  1394
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  CCTTTCGGCTTCGTGAGCTTCGACAACCCGGCCAGCGCGCAGACCGCCATCCAGGCCATGAACGGCTTCCAGAT  1554

Query 1395  CGGCATGAAGAGGCTCAAGGTGCAGCTGAAGCGGCCCAAAGACGCCAATCGCCCGTAC----------------  1452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
Sbjct 1555  CGGCATGAAGAGGCTCAAGGTGCAGCTGAAGCGGCCCAAAGACGCCAATCGCCCGTACTGAGCGCCGGCGGGAG  1628

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1629  CGTCCCCCGGGGGAGACCAGGACTCGCACAGGGCCAGTCAAATCCACCACAGTCTCGCGCTGAGCTAGGAATAA  1702

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1703  AGTTCACGTAATCACATGAGAGTGGAGAAAAGTCCCCCATCCGGCAGGATGCTGAACGGGCTACATTAAAAAAC  1776

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1777  AAACCTCTCTCTATATATATTTATAAATGAGAACTGTTGGATGACACCTTTGACATATCAGCCAATATCAATCA  1850

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1851  AGCTGAAGACTCCAGACACTGTCTGTGTGACTGTAACATTTCTTCAAGGAAAGTATAGCGTCTATGGAGTTCAG  1924

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1925  AGGGCACGTGTTTGGGGGAAAATATATATGACATGAAGAAGAAGATGAAGAAAAATGAGAAAAAAACACACAAA  1998

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1999  AGGCAACTTTAAAACAAAATATCACGAGCAGACGGGGAGGCTGAAGGGCTGGGAGCTGGGAGGAGACGCTGCTT  2072

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2073  ACCGATCCCGGGGCTTTTCCAGCCCACGGGCGCCTGACGCAGGCTGGGGCAAGTGGTGCGTGGGGCCTGGTCCC  2146

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2147  CAAGGGGCGGCTGAGAGGCCGCCACTGAGCATCTCTATCTGTCATTCCTTTAGCTATTTAGGGACCAAAGGACC  2220

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2221  AAACTTTTTATTGCAGATGTGTAGCTCTATGTCAAATAGAGGGGGAATGGAGGACCCCCTCCTTCCTGCCTCAT  2294

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2295  GGCTGTTCTTGAAACAGCTTAGAGCGATTCTATGAAAAAATGTAATAAAAAATTAAAAAAAAAACAAAAAACAA  2368

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2369  AAAAAACAACAAAAAAAGGAAAAATAACGCTTCAATGCTTTTAAAACAGCAAGATAATAGTTCTTTGATACTTT  2442

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2443  GAGAGGCGCTTTGATGACCCTCATCCAAGTCTATGACACTTTCCTATGGTTTTCTGTATTCTATGTCTGGATGG  2516

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2517  AGCTGTTAAAAGATGAACAAATTGGTGGATATTTGGGGAAAGCAACACAAATCTTAAAACTCACCCGTGAAGTG  2590

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2591  TGAGAAAACAAGGAGGGGAACAAATGGGACTTACCAAGCAAGGTCATTGTTGTGAAAAGTCTGTAAATGCTTCT  2664

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2665  AACTCTTCCCCCTCTTAAAATCATAATAGTTGTACAGAATTTTAAAAAGGAAAAGTTTAAAATACCTATATAAT  2738

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2739  AGAAGAAAAATTAGAGGAAAGCAAAAAATAAAAAAAAAAAATAAAAAAGGAAAAAAAAAACCTATAGAAGTTAG  2812

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2813  CATTACTGCTAAAATCCCAGATGTTGTAGGACTGTACTTTTGTAGAGTTTAGACAGAGCATCAATCCCTTCTCC  2886

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2887  CCGCGAGTGCAGTCGGATGCCGTTGTCCCCAAGGGCCAGGCCGAACTCGCCCCACACCTGCGGGCGCCTGGCTG  2960

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2961  CCGACGCCGGTGGAGGCCACGCCGTCGGTCGGGAACGGTCGCGTCGCCCGGGTCGCCGCCGCCGCCGCCGCCGT  3034

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3035  CATCCTCGCCTCTCGCTTCCCTCTGGGAGCTGCGCGCGCTTCACTCACCTTCCGCTTCACTCGCCTTCCACGCT  3108

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3109  TGCTCCAGAGACTTTCCGGGCAAGGGAGAACTGGGAACTTTCATCTTAAAACAACTAGACAACACACACACACA  3182

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3183  CAAAACCTTAAAAAAGAGAGAGAAAAATAAACAATCTTTGAAGAATTTCTGAAACTGTTTACAAGGAATTTTGA  3256

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3257  AAAACAGGGATGTTTAAATGATGCCGGCTCTGTTTTTCTGTAAATAAATTTGCATATTTTGTAGGACTTTTAAT  3330

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3331  TGTAATGATAGAGAAAAAAACAAGGAAAACTATTTAATGAAAGCACGATATTTATCTTTGGTAAATGACTTTAG  3404

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3405  AGCAGTTAAAGACATTGCTTAAAAAACTCAGAATCAGAAAAAACACTGAATTATTTAAGAACACATATATTTTA  3478

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3479  AAGTATAACATATTTATTATAATTTATTTGCACCCTTGGGAAGATTGCTTTGGCATTCTGCCTTGATTCCTTCT  3552

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3553  CATTGATGTCCAGGTCATCTGGAGGCCGGGGGTTCTCAGACCTACCAGTTTCCCTTTAGAAGAACAAATTTCCA  3626

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3627  GTTCCTCTAGGGCCTCCTGCCTTTCCTTTCTTTCTGTCAATTTTGTTGTTGTTGTTGTTTTTCATTTTCTTTTT  3700

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3701  TTCTCTTGACTCCTCCTTTTAGGATGTCCAGATGTAAAAAAAAAAAAAAAAAAAAGAAAAAAAGAAAAAAAAAA  3774

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3775  GAAAACAGCTGCAGTTCAGTACAACTGCTCTTTTCACACTCAACTCCCTAAAACTCCTTGTAACCTTCTGTAAC  3848

Query 1453  ------------------------------------------------------  1452
                                                                  
Sbjct 3849  TATTGGATGACGCTTTCTCCAGCTTAGCCCTAAATAAAGCACAGTTTAAAAAAA  3902