Nucleotide Global Alignment

Description

• Query: ccsbBroad304_12321
• Subject: XM_011246007.2
• Aligned Length: 2819
• Identities: 1628
• Gaps: 1024

Alignment

Query    1  ATGAAAGGCAGTAATAGAAATAAGGATCATTCAGCAGAAGGAGAAGGGGTTGGAAAACGACCAAAACGAAAGTG  74
            |||||||||||||||||||||||.||.||||||.|||||||||||||||..|||||||||||||||||.|||||
Sbjct    1  ATGAAAGGCAGTAATAGAAATAAAGACCATTCAACAGAAGGAGAAGGGGACGGAAAACGACCAAAACGGAAGTG  74

Query   75  TCTTCAGTGGCATCCATTGCTAGCAAAGAAACTTCTTGATTTTTCAGAAGAGGAAGAAGAGGAAGACGAAGAGG  148
            |||||||||||||||.||||||||.|||||||||||.||.||||||||.|||||.||.||.||.||.|||||||
Sbjct   75  TCTTCAGTGGCATCCGTTGCTAGCTAAGAAACTTCTGGACTTTTCAGAGGAGGAGGAGGAAGACGAGGAAGAGG  148

Query  149  AGGATATTGATAAGGTTCAACTTCTTGGGGCCGATGGCCTAGAGCAAGATGTTGGTGAAACTGAAGATGATGAA  222
            |.|||||||||||.|||||||||||||.|||.||||||||||||||||||||||.|||.||||||||||||||.
Sbjct  149  AAGATATTGATAAAGTTCAACTTCTTGAGGCGGATGGCCTAGAGCAAGATGTTGCTGAGACTGAAGATGATGAG  222

Query  223  TCACCAGAGCAGCGAGCCCGGAGACCAATGAATGCATTTCTTTTATTTTGCAAACGCCATCGCTCTCTTGTACG  296
            |||||.|||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.|||||.||
Sbjct  223  TCACCTGAGCAGCGAGCCCGGAGACCAATGAATGCATTTCTTTTATTTTGCAAGCGCCACCGCTCCCTTGTCCG  296

Query  297  TCAGGAACACCCCAGGCTTGATAACCGAGGTGCTACCAAGATACTAGCTGATTGGTGGGCTGTTCTTGATCCAA  370
            .|||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct  297  ACAGGAACACCCAAGGCTTGATAACCGAGGTGCTACCAAGATACTAGCTGATTGGTGGGCTGTTCTTGATCCTA  370

Query  371  AGGAAAAGCAGAAATACACAGACATGGCCAAGGAGTATAAGGATGCATTTATGAAAGCAAATCCTGGCTACAAA  444
            ||||||||||||||||.|||||||||||||||||||||||.|||||||||||||||||||||||||||||||.|
Sbjct  371  AGGAAAAGCAGAAATATACAGACATGGCCAAGGAGTATAAAGATGCATTTATGAAAGCAAATCCTGGCTACAGA  444

Query  445  TGGTGTCCTACCACAAACAAGCCTGTGAAATCCCCAACACCCACTGTCAATCCACGAAAGAAACTTTGGGCCTT  518
            |||||.||||||||||||||||||||||||||.|||||||||||||||||||||||.|||||||||||||||||
Sbjct  445  TGGTGCCCTACCACAAACAAGCCTGTGAAATCGCCAACACCCACTGTCAATCCACGGAAGAAACTTTGGGCCTT  518

Query  519  CCCATCTGACTCTTCAAGAGACTTGCCAAGCCCCAAGAAAGCAAAGACTGAAGAAATGCCTCAGCTTAACTTTG  592
            ||||.||||||||||||||||||||||||.|||||||||.||||||||   ||||.|.||||||||.|||||||
Sbjct  519  CCCACCTGACTCTTCAAGAGACTTGCCAACCCCCAAGAAGGCAAAGAC---AGAAGTTCCTCAGCTCAACTTTG  589

Query  593  GAATGGCTGATCCTACTCAAATGGGAGGCCTGAGTATGCTGCTGTTAGCTGGAGAACATGCTCTTGGCACACCA  666
            |||||||.|||||||||||.|||||.||||||||.|||.|||||.||||||||||.||.||||||||.||||||
Sbjct  590  GAATGGCAGATCCTACTCAGATGGGGGGCCTGAGCATGTTGCTGCTAGCTGGAGAGCACGCTCTTGGGACACCA  663

Query  667  GAGGTATCCTCTGGCACAT-GCAGGCCTGATGTTTCAGAATCTCCTGAATTAC---GTCAGAAGTCACCATTGT  736
            |||.||||.||..|.|||| ||| .||.||||         |.|||..|..||   ||||...||||.|.||||
Sbjct  664  GAGATATCTTCAAGGACATCGCA-CCCCGATG---------CGCCTTCAAAACAGTGTCAAGCGTCAGCCTTGT  727

Query  737  TTCAGTTTGCCGAGATATCTTCAAGTACGTC-------------------------------------------  767
            ||||||||||.|||||.||||||||.||.||                                           
Sbjct  728  TTCAGTTTGCAGAGATCTCTTCAAGCACTTCGCAGTTGGGTGGCACTGAGCCTGTGAAACGCTGTGGAAATTCT  801

Query  768  --------------------------------------------------------------------------  767
                                                                                      
Sbjct  802  GCACTCTTTCAACTGGCAGAGATGTGTCTGGCATCAGAGGGGGTGAAAATGGAAGACACAAAACTAATAAAATC  875

Query  768  --------------------------------------------------------------------------  767
                                                                                      
Sbjct  876  AAAAGAGTCAGATGGAGGAAGAATTGAGGAAATAGAAAAGGGGAAGGAAGAGAGAGGCACAGAAGTGGAGAAAA  949

Query  768  CCACT---------------------------------------------------------------------  772
            |||||                                                                     
Sbjct  950  CCACTGAAACTTCGTTCCAGAAGGAAGCAGAATTTGGGAAGTCAGCTAAGGGCAACGTGAGAGAGTCTAAGGAC  1023

Query  773  --------------------------------------------------------------------------  772
                                                                                      
Sbjct 1024  TTAAGAGACATCGAACAGCTACAGATGGATAATGTCATGGCTATCAAAGTGGAAGACCCCAAAGAAATTAGGAA  1097

Query  773  -----------------------------------CTGATGCTTCT----------------------------  783
                                               |||||..||||                            
Sbjct 1098  GGAGCCAGAGGATGATCAGAAATACAGTCACTTCCCTGATTTTTCTTACTCTGCCAGTAGCAAGATAATAATTA  1171

Query  784  --------------------------------------------------------------------------  783
                                                                                      
Sbjct 1172  GTGGTGTCCCCAGTAGAAAGGACCACATGTGCCATCCTCACGGAATTATGATCATTGAGGACCCAACCACGCTA  1245

Query  784  -ACAAAGCAG-------------------------------------------------TGTCAA---------  798
             |||||.|||                                                 ||.|||         
Sbjct 1246  AACAAACCAGAGAAGATAAAGAAGAAAAAGAAGAAAAACAAACTGGATCGACACGGAAATGACAAATCCACACC  1319

Query  799  --------------------------------------ACATC-----TGCCTTGT------------------  811
                                                  |||||     ||.|.|||                  
Sbjct 1320  CAAGAAGACGTGCAAGAAGAGGCAGTCTTCAGAATCTGACATCGAGAGTGTCATGTACACCATCGAAGCTGTGG  1393

Query  812  ------------------TT------------------------------------------------------  813
                              ||                                                      
Sbjct 1394  CAAAAGGAGACTGGGGTGTTGACAAACTCGGAGAAACCCCAAGAAAGAAAGTCCGCCCCTCCTCAAGTGGCAAG  1467

Query  814  -----CAGTTTG-------------CAGAGA---------------------------TTTC------------  830
                 ||.||||             ||.|||                           ||||            
Sbjct 1468  GGAGGCATTTTGGATGCCAAGCCACCAAAGAAAAAAGTGAAATCCAAGGAGAAGAAAGTTTCCAAGGAGAAGTG  1541

Query  831  TTCAAACA-----------------------------CTTCGCAGTT---------------------GGGTGG  854
            .|||.|||                             |||.|||.||                     |||.||
Sbjct 1542  CTCAGACATCACCAAAGAGTCTCGACCTCCAGATTTCCTTAGCATTTCTGCCAGCAAGAGTGTTCCTGGGGAGG  1615

Query  855  T----------------------------------------------------------------------GCT  858
            |                                                                      |||
Sbjct 1616  TGCCAGAGGGCATAAAAGCAGAACCCTTGACCCCTACCGAGGATGCACTGCCACCTAGCCTACCAGGACAGGCT  1689

Query  859  GAGCCT-------------------GTAAAACG-----CTGT-------GGAAA--------GTC-TGCA----  888
            .|||||                   |.||||||     ||||       |||||        ||| ||||    
Sbjct 1690  AAGCCTGAGGATAGTGATTGTCACAGAAAAACGGAGACCTGTGGCTCCAGGAAATCTGAGAGGTCTTGCAAAGG  1763

Query  889  --CTCTTT---CAAC------------------------------------------TGGCAGAGGAAAACGAA  915
              ||||||   .|||                                          ||.||||||.|||||||
Sbjct 1764  TGCTCTTTATAAAACCCTGGTGTCCGAGGGCATGCTCACCTCTCTCCGAGCTAATGTTGACAGAGGGAAACGAA  1837

Query  916  GCTCAGGAAAAGGAAACTCCTCTGATCATGAAGGGTGTTGGAATGAAGAAAGCTGGACATTTAGTCAGAGTGGG  989
            ||||||||||||||||||||||||||||||||||||||||||.||||||.|||||||||||||.||||||||||
Sbjct 1838  GCTCAGGAAAAGGAAACTCCTCTGATCATGAAGGGTGTTGGAGTGAAGAGAGCTGGACATTTAATCAGAGTGGG  1911

Query  990  ACCAGTGGGAGCAAGAAGTTCAAGAAGACAAAGCCAAAAGAAGACTGTCTCCTTGGCTCCGCAAAGCTGGATGA  1063
            ||||||||||||||||||||.||||||   ||.|.||..|||||||...|||||||.||.||.|||||||||||
Sbjct 1912  ACCAGTGGGAGCAAGAAGTTTAAGAAG---AAACTAAGGGAAGACTCCTTCCTTGGTTCTGCGAAGCTGGATGA  1982

Query 1064  AGAATTTGAAAAAAAATTCAACAGCCTCCCTCAATATAGTCCTGTTACATTTGACCGGAAATGTGTACCTGTCC  1137
            ||||||||||||.||||||||||||||||||||||||||||||.|||||||||||||||||||.|||.||...|
Sbjct 1983  AGAATTTGAAAAGAAATTCAACAGCCTCCCTCAATATAGTCCTATTACATTTGACCGGAAATGCGTATCTACTC  2056

Query 1138  CAAGAAAAAAGAAGAAGACTGGAAATGTGTCCTCAGAACCGACTAAAACCAGCAAAGGTCCTTTCCAGTCTCAG  1211
            |||||||||||||||||||||||||..|||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 2057  CAAGAAAAAAGAAGAAGACTGGAAACATGTCCTCAGAATCGACTAAAACCAGCAAAGGTCCTTTCCAGTCTCAG  2130

Query 1212  AAAAAGAACTTATTCCACAAAATTGTCAGCAAATATAAGCACAAAAAGGAGAAGCCCAATGTTCCGGAAAAAGG  1285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.||||||||
Sbjct 2131  AAAAAGAACTTATTCCACAAAATTGTCAGCAAATATAAGCACAAAAAGGAGAAGCCTAATGTTCCAGAAAAAGG  2204

Query 1286  AAGTGGGGATAAATGGTCAAACAAGCAACTCTTCTTGGATGCCATTCACCCTACAGAAGCCATATTTTCAGAAG  1359
            |||||||||||||||||||.||||||||.|.||||||||||||||||||||||||||||||||||||||.||||
Sbjct 2205  AAGTGGGGATAAATGGTCACACAAGCAATTTTTCTTGGATGCCATTCACCCTACAGAAGCCATATTTTCCGAAG  2278

Query 1360  ACAGAAACACCATGGAGCCTGTTCATAAGGTTAAAAATATCCCATCCATTTTCAACACTCCAGAGCCAACAACA  1433
            |.|.||.|||||..|||||||.|..|||||||||||||..||.|||||||..||||||||||||||||||||||
Sbjct 2279  ATAAAAGCACCACAGAGCCTGCTTTTAAGGTTAAAAATGCCCTATCCATTCCCAACACTCCAGAGCCAACAACA  2352

Query 1434  ACGCAAGAACCTTTGGTGGGCAGCCAAAAGAGAAAAGCAAGGAAAACCAAGATTACACACCTTGTCAGGACAGC  1507
            |.|||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||||||||.||
Sbjct 2353  ATGCAAGAACCTTTGGTTGGCAGCCAAAAGAGAAAAGCAAGGAAAACCAAGATCACACACCTTGTCAGGACTGC  2426

Query 1508  AGATGGCCGGGTATCACCAGCAGGAGGTACTTTGGATGACAAACCAAAGGAACAACTGCAGAGGAGTCTCCCTA  1581
            |||||||||.|||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||.|
Sbjct 2427  AGATGGCCGAGTATCACCAGCAGGAGGTACTTTGGATGACAAACCAAAGGAGCAACTGCAGAGGAGTCTCCCCA  2500

Query 1582  AAGCAACTGAGACAGACTGCAATGACAAATGCTCACACAACACCGAGGTCGGGGAGACGCGGAGCAGTACTCCA  1655
            |||...|||.||||.|||||..||||||.||||||||||.|||   |||.|.||||.|.||||||||.||||||
Sbjct 2501  AAGTCCCTGGGACATACTGCGGTGACAATTGCTCACACAGCAC---GGTTGAGGAGCCACGGAGCAGCACTCCA  2571

Query 1656  GAAATGCCTGCCGTGTCTGCGTTCTTTAGCCTCGCTGCGCTGGCTGAAGTGGCAGCCATGGAAAATGTGCACAG  1729
            ||.||||||||.||||||||||||||.|||||||||||.||||||||.||.||.||||||||.|||||||||||
Sbjct 2572  GACATGCCTGCTGTGTCTGCGTTCTTCAGCCTCGCTGCACTGGCTGAGGTTGCGGCCATGGAGAATGTGCACAG  2645

Query 1730  AGGTCAGAGGTCAACTCCGCTCACCCATGATGGACAGCCAAAAGAAATGCCGCAGGCTCCTGTACTTATTTCCT  1803
            |||.|||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 2646  AGGCCAGAGATCAACTCCGCTCACCCATGATGGACAGCCAAAAGAAATGCCGCAGGCTCCTGTACTTATTTCTT  2719

Query 1804  GCGCTGACCAGTGAAGCGCCCTTTCATTGTAAAACATTGTGCTTTACCTACTACCCTAGCCTTGTCTTTACCGA  1877
            |.|||||||||                                                               
Sbjct 2720  GTGCTGACCAG---------------------------------------------------------------  2730

Query 1878  GGGATGC  1884
                   
Sbjct 2731  -------  2730