Construct: ORF ccsbBroad304_12321
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014499.1_s304c1, BRDN0000408811
- Derived from:
- ccsbBroadEn_12321
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BBX (56987)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_12321
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 56987 | BBX | BBX high mobility group box... | NM_001276286.2 | 100% | 100% | |
2 | human | 56987 | BBX | BBX high mobility group box... | XM_024453662.1 | 98.1% | 98.1% | 1_36del |
3 | human | 56987 | BBX | BBX high mobility group box... | XM_024453663.1 | 97.6% | 97.6% | 1_36del;1568_1569insGGTACTTTG |
4 | human | 56987 | BBX | BBX high mobility group box... | XM_024453666.1 | 94.7% | 94.7% | 1190_1191ins90;1442_1443insGGTACTTTG |
5 | human | 56987 | BBX | BBX high mobility group box... | XM_024453664.1 | 94% | 94% | 1_36del;1378_1379ins78 |
6 | human | 56987 | BBX | BBX high mobility group box... | XM_024453665.1 | 93.4% | 93.4% | 1_36del;1226_1227ins90 |
7 | human | 56987 | BBX | BBX high mobility group box... | XM_024453667.1 | 89.3% | 89.3% | 1_36del;1226_1227ins90;1288_1289ins78 |
8 | human | 56987 | BBX | BBX high mobility group box... | NM_001142568.3 | 62.7% | 35.9% | 902_1910del;2823_2824ins70 |
9 | human | 56987 | BBX | BBX high mobility group box... | XM_005247642.4 | 62.7% | 35.9% | 902_1910del;2823_2824ins70 |
10 | human | 56987 | BBX | BBX high mobility group box... | XM_005247643.4 | 62.7% | 35.9% | 902_1910del;2823_2824ins70 |
11 | human | 56987 | BBX | BBX high mobility group box... | XM_005247644.4 | 62.7% | 35.9% | 902_1910del;2823_2824ins70 |
12 | human | 56987 | BBX | BBX high mobility group box... | XM_011513000.2 | 62.7% | 35.9% | 902_1910del;2823_2824ins70 |
13 | human | 56987 | BBX | BBX high mobility group box... | XM_011513001.2 | 62.7% | 35.9% | 902_1910del;2823_2824ins70 |
14 | human | 56987 | BBX | BBX high mobility group box... | XM_017006881.2 | 62.7% | 35.9% | 902_1910del;2823_2824ins70 |
15 | human | 56987 | BBX | BBX high mobility group box... | XM_024453646.1 | 62.7% | 35.9% | 902_1910del;2823_2824ins70 |
16 | human | 56987 | BBX | BBX high mobility group box... | XM_024453647.1 | 62.7% | 35.9% | 902_1910del;2823_2824ins70 |
17 | human | 56987 | BBX | BBX high mobility group box... | XM_024453648.1 | 62.7% | 35.9% | 902_1910del;2823_2824ins70 |
18 | human | 56987 | BBX | BBX high mobility group box... | XM_024453649.1 | 62.7% | 35.9% | 902_1910del;2823_2824ins70 |
19 | human | 56987 | BBX | BBX high mobility group box... | XM_024453650.1 | 62.7% | 35.9% | 902_1910del;2823_2824ins70 |
20 | human | 56987 | BBX | BBX high mobility group box... | XM_024453651.1 | 62.7% | 35.9% | 902_1910del;2823_2824ins70 |
21 | human | 56987 | BBX | BBX high mobility group box... | XM_024453652.1 | 62.7% | 35.9% | 902_1910del;2823_2824ins70 |
22 | human | 56987 | BBX | BBX high mobility group box... | XM_024453653.1 | 62.7% | 35.9% | 902_1910del;2823_2824ins70 |
23 | human | 56987 | BBX | BBX high mobility group box... | XM_024453654.1 | 62.7% | 35.9% | 902_1910del;2823_2824ins70 |
24 | human | 56987 | BBX | BBX high mobility group box... | XM_024453655.1 | 62.7% | 35.9% | 902_1910del;2823_2824ins70 |
25 | human | 56987 | BBX | BBX high mobility group box... | XM_024453644.1 | 61.9% | 35.5% | 1_36del;938_1946del;2859_2860ins70 |
26 | human | 56987 | BBX | BBX high mobility group box... | XM_024453645.1 | 61.6% | 35.6% | (many diffs) |
27 | human | 56987 | BBX | BBX high mobility group box... | NM_020235.7 | 59.5% | 37% | 902_1910del;2199_2200ins90;2733_2734ins70 |
28 | human | 56987 | BBX | BBX high mobility group box... | XM_011513004.2 | 59.5% | 37% | 902_1910del;2199_2200ins90;2733_2734ins70 |
29 | human | 56987 | BBX | BBX high mobility group box... | XM_017006882.1 | 59.5% | 37% | 902_1910del;2199_2200ins90;2733_2734ins70 |
30 | human | 56987 | BBX | BBX high mobility group box... | XM_024453659.1 | 59.5% | 37% | 902_1910del;2199_2200ins90;2733_2734ins70 |
31 | human | 56987 | BBX | BBX high mobility group box... | XM_024453660.1 | 59.5% | 37% | 902_1910del;2199_2200ins90;2733_2734ins70 |
32 | human | 56987 | BBX | BBX high mobility group box... | XM_024453656.1 | 59.2% | 36.4% | (many diffs) |
33 | human | 56987 | BBX | BBX high mobility group box... | XM_024453657.1 | 58.8% | 36.6% | (many diffs) |
34 | human | 56987 | BBX | BBX high mobility group box... | XM_024453658.1 | 58.5% | 36.7% | (many diffs) |
35 | human | 56987 | BBX | BBX high mobility group box... | XM_024453661.1 | 56.1% | 37.5% | (many diffs) |
36 | mouse | 70508 | Bbx | bobby sox HMG box containing | XM_011246007.2 | 57.7% | 31.9% | (many diffs) |
37 | mouse | 70508 | Bbx | bobby sox HMG box containing | XM_006522543.3 | 57.1% | 34.4% | (many diffs) |
38 | mouse | 70508 | Bbx | bobby sox HMG box containing | XM_006522544.3 | 57.1% | 34.4% | (many diffs) |
39 | mouse | 70508 | Bbx | bobby sox HMG box containing | XM_006522545.3 | 57.1% | 34.4% | (many diffs) |
40 | mouse | 70508 | Bbx | bobby sox HMG box containing | XM_006522546.2 | 57.1% | 34.4% | (many diffs) |
41 | mouse | 70508 | Bbx | bobby sox HMG box containing | XM_006522547.3 | 57.1% | 34.4% | (many diffs) |
42 | mouse | 70508 | Bbx | bobby sox HMG box containing | XM_006522548.3 | 57.1% | 34.4% | (many diffs) |
43 | mouse | 70508 | Bbx | bobby sox HMG box containing | XM_006522549.3 | 57.1% | 34.4% | (many diffs) |
44 | mouse | 70508 | Bbx | bobby sox HMG box containing | XM_006522553.3 | 57.1% | 34.4% | (many diffs) |
45 | mouse | 70508 | Bbx | bobby sox HMG box containing | XM_006522554.3 | 57.1% | 34.4% | (many diffs) |
46 | mouse | 70508 | Bbx | bobby sox HMG box containing | XM_006522555.3 | 57.1% | 34.4% | (many diffs) |
47 | mouse | 70508 | Bbx | bobby sox HMG box containing | XM_011246005.2 | 57.1% | 34.4% | (many diffs) |
48 | mouse | 70508 | Bbx | bobby sox HMG box containing | XM_011246006.2 | 57.1% | 34.4% | (many diffs) |
49 | mouse | 70508 | Bbx | bobby sox HMG box containing | NM_027444.3 | 54% | 35.4% | (many diffs) |
50 | mouse | 70508 | Bbx | bobby sox HMG box containing | XM_011246008.2 | 54% | 35.4% | (many diffs) |
51 | mouse | 70508 | Bbx | bobby sox HMG box containing | XM_017317130.1 | 54% | 35.4% | (many diffs) |
52 | mouse | 70508 | Bbx | bobby sox HMG box containing | XM_006522560.3 | 53.4% | 30.8% | (many diffs) |
53 | mouse | 70508 | Bbx | bobby sox HMG box containing | XM_006522561.3 | 53.4% | 30.8% | (many diffs) |
54 | mouse | 70508 | Bbx | bobby sox HMG box containing | NM_001347240.1 | 52.1% | 36.1% | (many diffs) |
55 | mouse | 70508 | Bbx | bobby sox HMG box containing | XM_011246009.1 | 52.1% | 36.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1953
- ORF length:
- 1884
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gaaaggcagt aatagaaata aggatcattc agcagaagga gaaggggttg 121 gaaaacgacc aaaacgaaag tgtcttcagt ggcatccatt gctagcaaag aaacttcttg 181 atttttcaga agaggaagaa gaggaagacg aagaggagga tattgataag gttcaacttc 241 ttggggccga tggcctagag caagatgttg gtgaaactga agatgatgaa tcaccagagc 301 agcgagcccg gagaccaatg aatgcatttc ttttattttg caaacgccat cgctctcttg 361 tacgtcagga acaccccagg cttgataacc gaggtgctac caagatacta gctgattggt 421 gggctgttct tgatccaaag gaaaagcaga aatacacaga catggccaag gagtataagg 481 atgcatttat gaaagcaaat cctggctaca aatggtgtcc taccacaaac aagcctgtga 541 aatccccaac acccactgtc aatccacgaa agaaactttg ggccttccca tctgactctt 601 caagagactt gccaagcccc aagaaagcaa agactgaaga aatgcctcag cttaactttg 661 gaatggctga tcctactcaa atgggaggcc tgagtatgct gctgttagct ggagaacatg 721 ctcttggcac accagaggta tcctctggca catgcaggcc tgatgtttca gaatctcctg 781 aattacgtca gaagtcacca ttgtttcagt ttgccgagat atcttcaagt acgtcccact 841 ctgatgcttc tacaaagcag tgtcaaacat ctgccttgtt tcagtttgca gagatttctt 901 caaacacttc gcagttgggt ggtgctgagc ctgtaaaacg ctgtggaaag tctgcactct 961 ttcaactggc agaggaaaac gaagctcagg aaaaggaaac tcctctgatc atgaagggtg 1021 ttggaatgaa gaaagctgga catttagtca gagtgggacc agtgggagca agaagttcaa 1081 gaagacaaag ccaaaagaag actgtctcct tggctccgca aagctggatg aagaatttga 1141 aaaaaaattc aacagcctcc ctcaatatag tcctgttaca tttgaccgga aatgtgtacc 1201 tgtcccaaga aaaaagaaga agactggaaa tgtgtcctca gaaccgacta aaaccagcaa 1261 aggtcctttc cagtctcaga aaaagaactt attccacaaa attgtcagca aatataagca 1321 caaaaaggag aagcccaatg ttccggaaaa aggaagtggg gataaatggt caaacaagca 1381 actcttcttg gatgccattc accctacaga agccatattt tcagaagaca gaaacaccat 1441 ggagcctgtt cataaggtta aaaatatccc atccattttc aacactccag agccaacaac 1501 aacgcaagaa cctttggtgg gcagccaaaa gagaaaagca aggaaaacca agattacaca 1561 ccttgtcagg acagcagatg gccgggtatc accagcagga ggtactttgg atgacaaacc 1621 aaaggaacaa ctgcagagga gtctccctaa agcaactgag acagactgca atgacaaatg 1681 ctcacacaac accgaggtcg gggagacgcg gagcagtact ccagaaatgc ctgccgtgtc 1741 tgcgttcttt agcctcgctg cgctggctga agtggcagcc atggaaaatg tgcacagagg 1801 tcagaggtca actccgctca cccatgatgg acagccaaaa gaaatgccgc aggctcctgt 1861 acttatttcc tgcgctgacc agtgaagcgc cctttcattg taaaacattg tgctttacct 1921 actaccctag ccttgtcttt accgagggat gcttgccaac tttcttgtac aaagtggttg 1981 gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta 2041 accggtggcg cgttaagtcg acaatcaacc tctggatta