Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12358
- Subject:
- NM_001081037.2
- Aligned Length:
- 3269
- Identities:
- 1243
- Gaps:
- 1846
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGTCCACCCCGAGCAGATTCAAGAAGGACAAAGAGATCATAGCCGAGTATGAAAGTCAAGTCAAAGAAATCCG 74
Query 1 ----------------------------------------------ATGCGAGTTCAGCTTCTCCAGGATCTGC 28
||||||||||||||.||||||||.||.|
Sbjct 75 AGCCCAGCTGGTAGAACAACAAAAATGCCTGGAGCAGCAGACAGAGATGCGAGTTCAGCTGCTCCAGGACCTAC 148
Query 29 AAGATTTCTTCCGAAAAAAAGCTGAAATTGAGACGGAATATTCCCGGAATCTAGAGAAGTTAGCAGAAAGGTTC 102
|||||||||||||.||||||||.||||||||||||||||||||.|||||.||.||||||.|.||||||||||||
Sbjct 149 AAGATTTCTTCCGGAAAAAAGCCGAAATTGAGACGGAATATTCTCGGAACCTGGAGAAGCTGGCAGAAAGGTTC 222
Query 103 ATGGCAAAAACAAGAAGCACTAAGGATCATCAACAATACAAGAAAGACCAGAACCTGTTGTCTCCAGTGAACTG 176
|||||.||||||||||||||||||||.||||||||.|.||||||||||||.|||||||||||||||||||||||
Sbjct 223 ATGGCCAAAACAAGAAGCACTAAGGACCATCAACAGTTCAAGAAAGACCAAAACCTGTTGTCTCCAGTGAACTG 296
Query 177 CTGGTATTTGCTCCTGAACCAAGTAAGGAGAGAAAGCAAAGACCATGCAACCTTGAGTGACATCTATCTGAACA 250
||||||||||||||||||||||||.||.|||||.|||||||||||.||.||.||||||||||||||||||||||
Sbjct 297 CTGGTATTTGCTCCTGAACCAAGTGAGAAGAGAGAGCAAAGACCACGCCACTTTGAGTGACATCTATCTGAACA 370
Query 251 ATGTGATTATGCGGTTCATGCAGATAAGTGAGGATTCTACCAGGATGTTTAAAAAGAGCAAAGAGATTGCATTC 324
||||.||.||||||||||||||||||||.|||||.||.|||.||||||||||||||||||||||||||||.|||
Sbjct 371 ATGTCATCATGCGGTTCATGCAGATAAGCGAGGACTCCACCCGGATGTTTAAAAAGAGCAAAGAGATTGCGTTC 444
Query 325 CAACTTCATGAGGATTTAATGAAGGTTCTTAATGAGCTTTATACGGTGATGAAAACATACCATATGTATCATGC 398
||.|||||.|||||..|.|||||||||||.||||||||.||.||||||||||||||.|||||.|||||.||..|
Sbjct 445 CAGCTTCACGAGGACCTCATGAAGGTTCTGAATGAGCTCTACACGGTGATGAAAACCTACCACATGTACCACTC 518
Query 399 AGAGAGCATCAGTGCAGAGAGCAAGCTGAAAGAGGCCGAAAAACAAGAGGAAAAGCAAATTGGGAGATCTGGTG 472
|||||||||||||||||||||.|||||||||||.|||||.|||||||||||.|||||.||||||||.||.||.|
Sbjct 519 AGAGAGCATCAGTGCAGAGAGTAAGCTGAAAGAAGCCGAGAAACAAGAGGAGAAGCAGATTGGGAGGTCCGGCG 592
Query 473 ATCCAGTCTTCCATATTCGACTAGAGGAGAGACATCAACGGCGAAGCTCTGTAAAGAAAATTGAAAAAATGAAA 546
|.|||||||||||.|||.|.||.||.|||||.|||||..||||.||||||||.||||||||||||||||||||.
Sbjct 593 ACCCAGTCTTCCACATTAGGCTGGAAGAGAGGCATCAGAGGCGGAGCTCTGTGAAGAAAATTGAAAAAATGAAG 666
Query 547 GAAAAAAGACAAGCAAAATATTCAGAAAATAAGCTAAAATCAATTAAGGCACGGAACGAATATCTCCTAACACT 620
|||||.|||||||||||||||||||||||||||||.|||||.||.||.||.||.|||||.||||||||||||||
Sbjct 667 GAAAAGAGACAAGCAAAATATTCAGAAAATAAGCTGAAATCGATCAAAGCCCGCAACGAGTATCTCCTAACACT 740
Query 621 TGAAGCCACCAATGCCTCAGTTTTCAAGTACTATATTCATGATCTTTCTGATTTAATTGATTGCTGTGATCTTG 694
||||||.|||||.|||||.||.||||||||.||.||.|||||||||||.||.|||||.||.|||||||||||.|
Sbjct 741 TGAAGCAACCAACGCCTCCGTGTTCAAGTATTACATCCATGATCTTTCAGACTTAATAGACTGCTGTGATCTCG 814
Query 695 GCTACCATGCAAGTCTGAACAGAGCCCTAAGAACATATCTGTCTGCGGAGTACAACCTTGAAACCTCCAGACAT 768
||||||||||||||||||||||||||||.|||||.||.||.||.|||||||||||||||||||||||||||||.
Sbjct 815 GCTACCATGCAAGTCTGAACAGAGCCCTCAGAACGTACCTCTCGGCGGAGTACAACCTTGAAACCTCCAGACAC 888
Query 769 GAGGGCTTAGACATTATTGAGAATGCAGTTGATAATTTAGAGCCCAGGAGCGATAAGCAGAGATTCATGGAGAT 842
||.|||||||||||.|||||.||.||.||.||.|||||||||||||||||.||.||||||||.|||||||||||
Sbjct 889 GAAGGCTTAGACATCATTGAAAACGCTGTGGACAATTTAGAGCCCAGGAGTGACAAGCAGAGGTTCATGGAGAT 962
Query 843 GTACCCTGCTGCGTTCTGTCCACCAATGAAGTTTGAGTTTCAGTCTCACATGGGTGATGAGGTGTGCCAGGTCA 916
|||||||||.||.|||||.||.||||||||.||.||||||||||||||||||||||||||||||||.|||||||
Sbjct 963 GTACCCTGCGGCATTCTGCCCGCCAATGAAATTCGAGTTTCAGTCTCACATGGGTGATGAGGTGTGTCAGGTCA 1036
Query 917 GTGCCCAGCAGCCAGTCCAGGCAGAGCTCATGCTCAGGTACCAACAGTTGCAGTCCCGCCTTGCCACGCTCAAA 990
|.|||||||||||.||||||||.|||||||||||||||.||||||||.||||||||||.||.|||||.|||||.
Sbjct 1037 GCGCCCAGCAGCCCGTCCAGGCGGAGCTCATGCTCAGGAACCAACAGCTGCAGTCCCGACTGGCCACACTCAAG 1110
Query 991 ATCGAGAATGAAGAGGTTAAGAAAACGACTGAAGCCACCTTGCAGACGATACAAGATATGGTCACCATCGAGGA 1064
|||||||..||.|||||.|||||||||||.|||||||||.|.||||||||.|||||||||||||||||.|||||
Sbjct 1111 ATCGAGAGCGAGGAGGTCAAGAAAACGACAGAAGCCACCCTCCAGACGATCCAAGATATGGTCACCATTGAGGA 1184
Query 1065 CTATGATGTTTCTGAATGCTTCCAGCACAGTCGTTCCACAGAATCTGTGAAGTCCACTGTCTCTGAAACCTACC 1138
|||||||||.|||||.||.|||||||||||.||.||||||||.|||||||||||||||||.||.||||||||||
Sbjct 1185 CTATGATGTGTCTGAGTGTTTCCAGCACAGCCGATCCACAGAGTCTGTGAAGTCCACTGTGTCAGAAACCTACC 1258
Query 1139 TGAGTAAACCCAGCATCGCCAAGAGAAGAGCCAACCAGCAGGAAACTGAACAGTTCTACTTCATGAAACTCAGA 1212
||||||||||||||||||||||||||.|||||||||||||.|||||.||.||||||||||||||||||||..||
Sbjct 1259 TGAGTAAACCCAGCATCGCCAAGAGACGAGCCAACCAGCAAGAAACGGAGCAGTTCTACTTCATGAAACTTCGA 1332
Query 1213 GAATATTTGGAAGGCAGTAATCTCATCACAAAACTTCAAGCCAAACATGACTTGCTGCAGAGGACCCTGGGAGA 1286
||.|...|||||||||||||.|||||||||||.||.||.||.||.||||||||||||||||||||.||.|||||
Sbjct 1333 GAGTTCCTGGAAGGCAGTAACCTCATCACAAAGCTGCAGGCTAAGCATGACTTGCTGCAGAGGACTCTTGGAGA 1406
Query 1287 AGG---------TGAGT-TA-------------TCCAAA----------------------------ATGT--- 1306
||| |||.| || |||||| |.||
Sbjct 1407 AGGCCATAGAGCTGAATATATGACTACAAGGCCTCCAAACGTCCCCCCTAAGCCCCAGAAACACAGGAAGTCCA 1480
Query 1307 ------------------ATGGGAAGATG----ACCTGGAT---GATACA-TCGTATCATGTA----------- 1343
|||..|||.|| |...|||| ||.||| ||| |||.|.|
Sbjct 1481 GGCCCCGCTCCCAGTATAATGCTAAGTTGTTTAATGGGGATTTGGAGACATTCG--TCAAGGACTCAGGCCAGG 1552
Query 1344 -TAT-------ATTCCAGAAA---------GAGT-ATGAAT-TGTATATTTGTGCTTTAAGAAGCAGAGGACAC 1398
||| |||...|||| ||.| ||.||| |.||| .||.||.||.|.|||.|||
Sbjct 1553 TTATCCCTCTCATTGTGGAAAGCTGCATCCGATTCATTAATCTCTAT-----GGCCTTCAGCACCAGGGGA--- 1618
Query 1399 TCTGTGTTTAGA---TTTGGTT----------------------------TTGTTTGTA--------------- 1426
|.||.||| |.|||.| ||.|||..|
Sbjct 1619 ----TTTTCAGAGTGTCTGGCTCCCAGGTGGAAGTGAACGATATCAAGAATTCTTTCGAGAGAGGTGAGAACCC 1688
Query 1427 TATGTC--ATGAT------------------------------------------------------------- 1437
|.|||| ||||.
Sbjct 1689 TCTGTCCGATGAGCAGAGCAACCACGATATCAACTCGGTGGCCGGCGTGCTGAAGCTGTACTTCCGAGGGCTGG 1762
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 1763 AAAACCCCCTCTTTCCTAAGGAAAGGTTTACTGACCTGATTTCCTGTATCAGAATAGATAACCTCTATGAGAGG 1836
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 1837 GCGCTCCACATCCGCAAACTCCTCCTGACCTTGCCCAGGTCGGTCCTTATAGTGATGAGGTACCTGTTTGCCTT 1910
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 1911 CCTCAATCACCTCTCCCAGTACAGTGACGAGAACATGATGGACCCTTACAATCTGGCCATTTGCTTCGGCCCAA 1984
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 1985 CACTGATGCCGGTTCCAGAGATACAGGACCAAGTGTCTTGCCAGGCACACGTGAACGAGATTGTGAAGACCATC 2058
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2059 ATCATCCATCACGAGACTATTTTCCCAGATGCTAAAGAACTGGACGGCCCCGTGTATGAGAAATGCATGGCCGG 2132
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2133 AGGCGACTACTGCGACAGCCCCTACAGTGAGCATGGTACATTGGAGGAGGTGGACCAAGACGCCGGCACAGAGC 2206
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2207 CCCACACCAGTGAAGACGAGTGTGAGCCCATCGAAGCCATAGCCAAGTTTGACTACGTCGGGCGGTCAGCTAGA 2280
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2281 GAGCTGTCCTTCAAGAAGGGTGCATCCCTGCTGCTGTATCACCGAGCCTCCGAGGATTGGTGGGAAGGCAGACA 2354
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2355 CAACGGGATCGATGGCCTTGTGCCTCATCAGTACATAGTTGTGCAAGATATGGACGATACATTTTCAGACACGC 2428
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2429 TGAGCCAAAAGGCCGACAGCGAAGCCAGCAGCGGGCCAGTCACTGAAGACAAGTCCTCATCCAAGGACATGAAC 2502
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2503 TCCCCGACTGACCGCCATTCTGATAGCTATTTAGCCAGACAAAGAAAGAGAGGAGAGCCACCCCCTCCGGGAAG 2576
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2577 ACGTCCCGGCAGGACCAGCGATGGCCATTGTCCCCTGCATCCCCCGCATGCTCTGTCTAACTCCTCAATTGATC 2650
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2651 TGGGATCCCCAAACCTAGCCAGTCACCCCAGGGGCCTGTTGCAGAACCGTGGCCTCAATAATGACAGTCCTGAG 2724
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2725 AGGCGGCGCCGGCCGGGCCACGGCAGCCTGACCAATATCAGCCGGCATGACTCCCTCAAGAAGATCGACAGCCC 2798
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2799 TCCTATCCGGAGGTCCACATCATCAGGGCAGTACACAGGCTTCAATGACCACAAGCCACTGGACCCCGAGACGA 2872
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2873 TTGCTCAGGATATTGAGGAGACCATGAACACTGCTTTGAACGAACTCCGTGAACTCGAGAGGCAGAGCACAGTG 2946
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2947 AAGCACGCCCCCGATGTCGTGCTAGACACTTTGGAGCAAGTGAAGAACTCGCCCACCCCTGCGACTTCCACAGA 3020
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 3021 ATCACTCAGCCCACTGCACAATGTCGCCCTCAGGGGCTCAGAGCCACAGATTCGCCGGAGCACCAGCTCCTCCA 3094
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 3095 GCGAGACAATGAGTACTTTCAAGCCTATGGTGGCGCCCCGGATGGGCGTCCAGCTGAAGCCCCCAGCCCTTAGG 3168
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 3169 CCAAAGCCTGCTGTTCTTCCAAAAACAAACCCTACGATGGGACCTGCCGCACCTTCCCAGGGTCCCACAGACAA 3242
Query 1438 ------------- 1437
Sbjct 3243 GTCTTGCACGATG 3255
