Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12358
Subject:
NM_001081037.2
Aligned Length:
3269
Identities:
1243
Gaps:
1846

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGTCCACCCCGAGCAGATTCAAGAAGGACAAAGAGATCATAGCCGAGTATGAAAGTCAAGTCAAAGAAATCCG  74

Query    1  ----------------------------------------------ATGCGAGTTCAGCTTCTCCAGGATCTGC  28
                                                          ||||||||||||||.||||||||.||.|
Sbjct   75  AGCCCAGCTGGTAGAACAACAAAAATGCCTGGAGCAGCAGACAGAGATGCGAGTTCAGCTGCTCCAGGACCTAC  148

Query   29  AAGATTTCTTCCGAAAAAAAGCTGAAATTGAGACGGAATATTCCCGGAATCTAGAGAAGTTAGCAGAAAGGTTC  102
            |||||||||||||.||||||||.||||||||||||||||||||.|||||.||.||||||.|.||||||||||||
Sbjct  149  AAGATTTCTTCCGGAAAAAAGCCGAAATTGAGACGGAATATTCTCGGAACCTGGAGAAGCTGGCAGAAAGGTTC  222

Query  103  ATGGCAAAAACAAGAAGCACTAAGGATCATCAACAATACAAGAAAGACCAGAACCTGTTGTCTCCAGTGAACTG  176
            |||||.||||||||||||||||||||.||||||||.|.||||||||||||.|||||||||||||||||||||||
Sbjct  223  ATGGCCAAAACAAGAAGCACTAAGGACCATCAACAGTTCAAGAAAGACCAAAACCTGTTGTCTCCAGTGAACTG  296

Query  177  CTGGTATTTGCTCCTGAACCAAGTAAGGAGAGAAAGCAAAGACCATGCAACCTTGAGTGACATCTATCTGAACA  250
            ||||||||||||||||||||||||.||.|||||.|||||||||||.||.||.||||||||||||||||||||||
Sbjct  297  CTGGTATTTGCTCCTGAACCAAGTGAGAAGAGAGAGCAAAGACCACGCCACTTTGAGTGACATCTATCTGAACA  370

Query  251  ATGTGATTATGCGGTTCATGCAGATAAGTGAGGATTCTACCAGGATGTTTAAAAAGAGCAAAGAGATTGCATTC  324
            ||||.||.||||||||||||||||||||.|||||.||.|||.||||||||||||||||||||||||||||.|||
Sbjct  371  ATGTCATCATGCGGTTCATGCAGATAAGCGAGGACTCCACCCGGATGTTTAAAAAGAGCAAAGAGATTGCGTTC  444

Query  325  CAACTTCATGAGGATTTAATGAAGGTTCTTAATGAGCTTTATACGGTGATGAAAACATACCATATGTATCATGC  398
            ||.|||||.|||||..|.|||||||||||.||||||||.||.||||||||||||||.|||||.|||||.||..|
Sbjct  445  CAGCTTCACGAGGACCTCATGAAGGTTCTGAATGAGCTCTACACGGTGATGAAAACCTACCACATGTACCACTC  518

Query  399  AGAGAGCATCAGTGCAGAGAGCAAGCTGAAAGAGGCCGAAAAACAAGAGGAAAAGCAAATTGGGAGATCTGGTG  472
            |||||||||||||||||||||.|||||||||||.|||||.|||||||||||.|||||.||||||||.||.||.|
Sbjct  519  AGAGAGCATCAGTGCAGAGAGTAAGCTGAAAGAAGCCGAGAAACAAGAGGAGAAGCAGATTGGGAGGTCCGGCG  592

Query  473  ATCCAGTCTTCCATATTCGACTAGAGGAGAGACATCAACGGCGAAGCTCTGTAAAGAAAATTGAAAAAATGAAA  546
            |.|||||||||||.|||.|.||.||.|||||.|||||..||||.||||||||.||||||||||||||||||||.
Sbjct  593  ACCCAGTCTTCCACATTAGGCTGGAAGAGAGGCATCAGAGGCGGAGCTCTGTGAAGAAAATTGAAAAAATGAAG  666

Query  547  GAAAAAAGACAAGCAAAATATTCAGAAAATAAGCTAAAATCAATTAAGGCACGGAACGAATATCTCCTAACACT  620
            |||||.|||||||||||||||||||||||||||||.|||||.||.||.||.||.|||||.||||||||||||||
Sbjct  667  GAAAAGAGACAAGCAAAATATTCAGAAAATAAGCTGAAATCGATCAAAGCCCGCAACGAGTATCTCCTAACACT  740

Query  621  TGAAGCCACCAATGCCTCAGTTTTCAAGTACTATATTCATGATCTTTCTGATTTAATTGATTGCTGTGATCTTG  694
            ||||||.|||||.|||||.||.||||||||.||.||.|||||||||||.||.|||||.||.|||||||||||.|
Sbjct  741  TGAAGCAACCAACGCCTCCGTGTTCAAGTATTACATCCATGATCTTTCAGACTTAATAGACTGCTGTGATCTCG  814

Query  695  GCTACCATGCAAGTCTGAACAGAGCCCTAAGAACATATCTGTCTGCGGAGTACAACCTTGAAACCTCCAGACAT  768
            ||||||||||||||||||||||||||||.|||||.||.||.||.|||||||||||||||||||||||||||||.
Sbjct  815  GCTACCATGCAAGTCTGAACAGAGCCCTCAGAACGTACCTCTCGGCGGAGTACAACCTTGAAACCTCCAGACAC  888

Query  769  GAGGGCTTAGACATTATTGAGAATGCAGTTGATAATTTAGAGCCCAGGAGCGATAAGCAGAGATTCATGGAGAT  842
            ||.|||||||||||.|||||.||.||.||.||.|||||||||||||||||.||.||||||||.|||||||||||
Sbjct  889  GAAGGCTTAGACATCATTGAAAACGCTGTGGACAATTTAGAGCCCAGGAGTGACAAGCAGAGGTTCATGGAGAT  962

Query  843  GTACCCTGCTGCGTTCTGTCCACCAATGAAGTTTGAGTTTCAGTCTCACATGGGTGATGAGGTGTGCCAGGTCA  916
            |||||||||.||.|||||.||.||||||||.||.||||||||||||||||||||||||||||||||.|||||||
Sbjct  963  GTACCCTGCGGCATTCTGCCCGCCAATGAAATTCGAGTTTCAGTCTCACATGGGTGATGAGGTGTGTCAGGTCA  1036

Query  917  GTGCCCAGCAGCCAGTCCAGGCAGAGCTCATGCTCAGGTACCAACAGTTGCAGTCCCGCCTTGCCACGCTCAAA  990
            |.|||||||||||.||||||||.|||||||||||||||.||||||||.||||||||||.||.|||||.|||||.
Sbjct 1037  GCGCCCAGCAGCCCGTCCAGGCGGAGCTCATGCTCAGGAACCAACAGCTGCAGTCCCGACTGGCCACACTCAAG  1110

Query  991  ATCGAGAATGAAGAGGTTAAGAAAACGACTGAAGCCACCTTGCAGACGATACAAGATATGGTCACCATCGAGGA  1064
            |||||||..||.|||||.|||||||||||.|||||||||.|.||||||||.|||||||||||||||||.|||||
Sbjct 1111  ATCGAGAGCGAGGAGGTCAAGAAAACGACAGAAGCCACCCTCCAGACGATCCAAGATATGGTCACCATTGAGGA  1184

Query 1065  CTATGATGTTTCTGAATGCTTCCAGCACAGTCGTTCCACAGAATCTGTGAAGTCCACTGTCTCTGAAACCTACC  1138
            |||||||||.|||||.||.|||||||||||.||.||||||||.|||||||||||||||||.||.||||||||||
Sbjct 1185  CTATGATGTGTCTGAGTGTTTCCAGCACAGCCGATCCACAGAGTCTGTGAAGTCCACTGTGTCAGAAACCTACC  1258

Query 1139  TGAGTAAACCCAGCATCGCCAAGAGAAGAGCCAACCAGCAGGAAACTGAACAGTTCTACTTCATGAAACTCAGA  1212
            ||||||||||||||||||||||||||.|||||||||||||.|||||.||.||||||||||||||||||||..||
Sbjct 1259  TGAGTAAACCCAGCATCGCCAAGAGACGAGCCAACCAGCAAGAAACGGAGCAGTTCTACTTCATGAAACTTCGA  1332

Query 1213  GAATATTTGGAAGGCAGTAATCTCATCACAAAACTTCAAGCCAAACATGACTTGCTGCAGAGGACCCTGGGAGA  1286
            ||.|...|||||||||||||.|||||||||||.||.||.||.||.||||||||||||||||||||.||.|||||
Sbjct 1333  GAGTTCCTGGAAGGCAGTAACCTCATCACAAAGCTGCAGGCTAAGCATGACTTGCTGCAGAGGACTCTTGGAGA  1406

Query 1287  AGG---------TGAGT-TA-------------TCCAAA----------------------------ATGT---  1306
            |||         |||.| ||             ||||||                            |.||   
Sbjct 1407  AGGCCATAGAGCTGAATATATGACTACAAGGCCTCCAAACGTCCCCCCTAAGCCCCAGAAACACAGGAAGTCCA  1480

Query 1307  ------------------ATGGGAAGATG----ACCTGGAT---GATACA-TCGTATCATGTA-----------  1343
                              |||..|||.||    |...||||   ||.||| |||  |||.|.|           
Sbjct 1481  GGCCCCGCTCCCAGTATAATGCTAAGTTGTTTAATGGGGATTTGGAGACATTCG--TCAAGGACTCAGGCCAGG  1552

Query 1344  -TAT-------ATTCCAGAAA---------GAGT-ATGAAT-TGTATATTTGTGCTTTAAGAAGCAGAGGACAC  1398
             |||       |||...||||         ||.| ||.||| |.|||     .||.||.||.|.|||.|||   
Sbjct 1553  TTATCCCTCTCATTGTGGAAAGCTGCATCCGATTCATTAATCTCTAT-----GGCCTTCAGCACCAGGGGA---  1618

Query 1399  TCTGTGTTTAGA---TTTGGTT----------------------------TTGTTTGTA---------------  1426
                |.||.|||   |.|||.|                            ||.|||..|               
Sbjct 1619  ----TTTTCAGAGTGTCTGGCTCCCAGGTGGAAGTGAACGATATCAAGAATTCTTTCGAGAGAGGTGAGAACCC  1688

Query 1427  TATGTC--ATGAT-------------------------------------------------------------  1437
            |.||||  ||||.                                                             
Sbjct 1689  TCTGTCCGATGAGCAGAGCAACCACGATATCAACTCGGTGGCCGGCGTGCTGAAGCTGTACTTCCGAGGGCTGG  1762

Query 1438  --------------------------------------------------------------------------  1437
                                                                                      
Sbjct 1763  AAAACCCCCTCTTTCCTAAGGAAAGGTTTACTGACCTGATTTCCTGTATCAGAATAGATAACCTCTATGAGAGG  1836

Query 1438  --------------------------------------------------------------------------  1437
                                                                                      
Sbjct 1837  GCGCTCCACATCCGCAAACTCCTCCTGACCTTGCCCAGGTCGGTCCTTATAGTGATGAGGTACCTGTTTGCCTT  1910

Query 1438  --------------------------------------------------------------------------  1437
                                                                                      
Sbjct 1911  CCTCAATCACCTCTCCCAGTACAGTGACGAGAACATGATGGACCCTTACAATCTGGCCATTTGCTTCGGCCCAA  1984

Query 1438  --------------------------------------------------------------------------  1437
                                                                                      
Sbjct 1985  CACTGATGCCGGTTCCAGAGATACAGGACCAAGTGTCTTGCCAGGCACACGTGAACGAGATTGTGAAGACCATC  2058

Query 1438  --------------------------------------------------------------------------  1437
                                                                                      
Sbjct 2059  ATCATCCATCACGAGACTATTTTCCCAGATGCTAAAGAACTGGACGGCCCCGTGTATGAGAAATGCATGGCCGG  2132

Query 1438  --------------------------------------------------------------------------  1437
                                                                                      
Sbjct 2133  AGGCGACTACTGCGACAGCCCCTACAGTGAGCATGGTACATTGGAGGAGGTGGACCAAGACGCCGGCACAGAGC  2206

Query 1438  --------------------------------------------------------------------------  1437
                                                                                      
Sbjct 2207  CCCACACCAGTGAAGACGAGTGTGAGCCCATCGAAGCCATAGCCAAGTTTGACTACGTCGGGCGGTCAGCTAGA  2280

Query 1438  --------------------------------------------------------------------------  1437
                                                                                      
Sbjct 2281  GAGCTGTCCTTCAAGAAGGGTGCATCCCTGCTGCTGTATCACCGAGCCTCCGAGGATTGGTGGGAAGGCAGACA  2354

Query 1438  --------------------------------------------------------------------------  1437
                                                                                      
Sbjct 2355  CAACGGGATCGATGGCCTTGTGCCTCATCAGTACATAGTTGTGCAAGATATGGACGATACATTTTCAGACACGC  2428

Query 1438  --------------------------------------------------------------------------  1437
                                                                                      
Sbjct 2429  TGAGCCAAAAGGCCGACAGCGAAGCCAGCAGCGGGCCAGTCACTGAAGACAAGTCCTCATCCAAGGACATGAAC  2502

Query 1438  --------------------------------------------------------------------------  1437
                                                                                      
Sbjct 2503  TCCCCGACTGACCGCCATTCTGATAGCTATTTAGCCAGACAAAGAAAGAGAGGAGAGCCACCCCCTCCGGGAAG  2576

Query 1438  --------------------------------------------------------------------------  1437
                                                                                      
Sbjct 2577  ACGTCCCGGCAGGACCAGCGATGGCCATTGTCCCCTGCATCCCCCGCATGCTCTGTCTAACTCCTCAATTGATC  2650

Query 1438  --------------------------------------------------------------------------  1437
                                                                                      
Sbjct 2651  TGGGATCCCCAAACCTAGCCAGTCACCCCAGGGGCCTGTTGCAGAACCGTGGCCTCAATAATGACAGTCCTGAG  2724

Query 1438  --------------------------------------------------------------------------  1437
                                                                                      
Sbjct 2725  AGGCGGCGCCGGCCGGGCCACGGCAGCCTGACCAATATCAGCCGGCATGACTCCCTCAAGAAGATCGACAGCCC  2798

Query 1438  --------------------------------------------------------------------------  1437
                                                                                      
Sbjct 2799  TCCTATCCGGAGGTCCACATCATCAGGGCAGTACACAGGCTTCAATGACCACAAGCCACTGGACCCCGAGACGA  2872

Query 1438  --------------------------------------------------------------------------  1437
                                                                                      
Sbjct 2873  TTGCTCAGGATATTGAGGAGACCATGAACACTGCTTTGAACGAACTCCGTGAACTCGAGAGGCAGAGCACAGTG  2946

Query 1438  --------------------------------------------------------------------------  1437
                                                                                      
Sbjct 2947  AAGCACGCCCCCGATGTCGTGCTAGACACTTTGGAGCAAGTGAAGAACTCGCCCACCCCTGCGACTTCCACAGA  3020

Query 1438  --------------------------------------------------------------------------  1437
                                                                                      
Sbjct 3021  ATCACTCAGCCCACTGCACAATGTCGCCCTCAGGGGCTCAGAGCCACAGATTCGCCGGAGCACCAGCTCCTCCA  3094

Query 1438  --------------------------------------------------------------------------  1437
                                                                                      
Sbjct 3095  GCGAGACAATGAGTACTTTCAAGCCTATGGTGGCGCCCCGGATGGGCGTCCAGCTGAAGCCCCCAGCCCTTAGG  3168

Query 1438  --------------------------------------------------------------------------  1437
                                                                                      
Sbjct 3169  CCAAAGCCTGCTGTTCTTCCAAAAACAAACCCTACGATGGGACCTGCCGCACCTTCCCAGGGTCCCACAGACAA  3242

Query 1438  -------------  1437
                         
Sbjct 3243  GTCTTGCACGATG  3255

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.