Construct: ORF ccsbBroad304_12358

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001275.1_s304c1, BRDN0000406753
Derived from:
ccsbBroadEn_12358
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SRGAP1 (57522)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12358
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57522 SRGAP1 SLIT-ROBO Rho GTPase activa... XM_024449097.1 83.8% 83.2% (many diffs)
2 human 57522 SRGAP1 SLIT-ROBO Rho GTPase activa... XM_024449096.1 82.2% 78.8% (many diffs)
3 human 57522 SRGAP1 SLIT-ROBO Rho GTPase activa... XM_011538580.2 44.1% 41.3% (many diffs)
4 human 57522 SRGAP1 SLIT-ROBO Rho GTPase activa... XM_011538581.2 44.1% 41.3% (many diffs)
5 human 57522 SRGAP1 SLIT-ROBO Rho GTPase activa... NM_001346201.2 43.1% 40.1% (many diffs)
6 human 57522 SRGAP1 SLIT-ROBO Rho GTPase activa... NM_020762.4 42.5% 39.8% (many diffs)
7 mouse 117600 Srgap1 SLIT-ROBO Rho GTPase activa... NM_001242411.1 38.9% 39.6% (many diffs)
8 mouse 117600 Srgap1 SLIT-ROBO Rho GTPase activa... XM_006513140.2 38.7% 40.1% (many diffs)
9 mouse 117600 Srgap1 SLIT-ROBO Rho GTPase activa... NM_001081037.2 38% 39.3% (many diffs)
10 mouse 117600 Srgap1 SLIT-ROBO Rho GTPase activa... XR_003948581.1 14% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1503
ORF length:
1437
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcg agttcagctt ctccaggatc tgcaagattt cttccgaaaa aaagctgaaa
121ttgagacgga atattcccgg aatctagaga agttagcaga aaggttcatg gcaaaaacaa
181gaagcactaa ggatcatcaa caatacaaga aagaccagaa cctgttgtct ccagtgaact
241gctggtattt gctcctgaac caagtaagga gagaaagcaa agaccatgca accttgagtg
301acatctatct gaacaatgtg attatgcggt tcatgcagat aagtgaggat tctaccagga
361tgtttaaaaa gagcaaagag attgcattcc aacttcatga ggatttaatg aaggttctta
421atgagcttta tacggtgatg aaaacatacc atatgtatca tgcagagagc atcagtgcag
481agagcaagct gaaagaggcc gaaaaacaag aggaaaagca aattgggaga tctggtgatc
541cagtcttcca tattcgacta gaggagagac atcaacggcg aagctctgta aagaaaattg
601aaaaaatgaa agaaaaaaga caagcaaaat attcagaaaa taagctaaaa tcaattaagg
661cacggaacga atatctccta acacttgaag ccaccaatgc ctcagttttc aagtactata
721ttcatgatct ttctgattta attgattgct gtgatcttgg ctaccatgca agtctgaaca
781gagccctaag aacatatctg tctgcggagt acaaccttga aacctccaga catgagggct
841tagacattat tgagaatgca gttgataatt tagagcccag gagcgataag cagagattca
901tggagatgta ccctgctgcg ttctgtccac caatgaagtt tgagtttcag tctcacatgg
961gtgatgaggt gtgccaggtc agtgcccagc agccagtcca ggcagagctc atgctcaggt
1021accaacagtt gcagtcccgc cttgccacgc tcaaaatcga gaatgaagag gttaagaaaa
1081cgactgaagc caccttgcag acgatacaag atatggtcac catcgaggac tatgatgttt
1141ctgaatgctt ccagcacagt cgttccacag aatctgtgaa gtccactgtc tctgaaacct
1201acctgagtaa acccagcatc gccaagagaa gagccaacca gcaggaaact gaacagttct
1261acttcatgaa actcagagaa tatttggaag gcagtaatct catcacaaaa cttcaagcca
1321aacatgactt gctgcagagg accctgggag aaggtgagtt atccaaaatg tatgggaaga
1381tgacctggat gatacatcgt atcatgtata tattccagaa agagtatgaa ttgtatattt
1441gtgctttaag aagcagagga cactctgtgt ttagatttgg ttttgtttgt atatgtcatg
1501attacccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
1561tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
1621tctggatta

Download FASTA (ORF) (Full)

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