Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12717
- Subject:
- XM_017317781.1
- Aligned Length:
- 3584
- Identities:
- 1393
- Gaps:
- 1999
Alignment
Query 1 ATGGGGCCACGAAAGAAAAGTGTGAAAACATGTATCATGAATAATGAAATTCCAGAAGAAATGACAGCAGATGA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 AACAAAGGACTATATGAATCAACTTTCACATGAAGTACTTTGCCATATTTTTAGGTACCTCCCTCTGCAGGATA 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 TCATGTGTATGGAATGTCTTTCCCGGAAGCTAAAGGAAGCAGTGACCCTATATCTGCGAGTTGTGAGAGTTGTA 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 GATCTCTGTGCAGGGCGGTGGTGGGAATACATGCCAAGTGGCTTTACAGATGCCAGTTTTCTAACACTATTAAA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 GAAGATGCCAGATGTTGAACAGCTATATGGCCTTCACCCTCGATACCTTGAGAGGCGAAGAGTAAGGGGCCATG 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 AGGCTTTTAGCATTCCAGGAGTCCTAGAAGCTTTGCAGGCATGCCCAAACTTAGTGGGTGTGGAAACTTCTCAT 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 TTGGAGTTGGTAGAATCCATTTGGACATATATGCCCCATGTTCATATTTTGGGGAAATTTCGTAATCGTAATGG 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 AGCTTTTCCAATTCCTCCTGAAAATAAACTGAAAATTCCTATAGGAGCCAAAATTCAAACTTTACATTTAGTTG 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 GGGTGAATGTTCCTGAAATTCCTTGTATCCCAATGCTAAGGCACCTTTATATGAAGTGGGTAAGACTCACTAAA 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 CCACAGCCATTTAAAGACTTCCTTTGTATCAGCTTAAGAACTTTCGTCATGAGGAACTGTGCAGGACCCACAAA 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 TTCCTTGAAATATGTCCCTTTAGTAACAGGCTTAGCCTCTGCCCGAAACTTGGAACACTTAGAAATGGTTCGAG 814
Sbjct 1 -------------------------------------------------------------------------- 0
Query 815 TTCCTTTCCTTGGAGGTCTTATCCAACATGTTGTTGAAGACAGTTGGAGATCAGGTGGTTTTAGAAATTTGCAC 888
Sbjct 1 -------------------------------------------------------------------------- 0
Query 889 ACTATTGTTCTGGGAGCTTGCAAAAATGCTCTTGAAGTAGATCTTGGTTACCTCATCATTACTGCTGCCCGTAG 962
Sbjct 1 -------------------------------------------------------------------------- 0
Query 963 GTTACATGAAGTTCGGATCCAGCCTTCCCTAACCAAAGATGGTGTCTTTTCTGCCCTAAAGATGGCAGAGTTGG 1036
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1037 AGTTTCCCCAGTTTGAAACCCTTCATCTAGGATATGTAGATGAGTTTTTGCTACAGAGCAGAATGGCTAATGCG 1110
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1111 GATCTGGTGAAGTATGGTTTGGCTGATGTGGTAGAAAATCCTGGTATCATCACTGATATAGGGATGAAAGCAGT 1184
|||||||
Sbjct 1 ---------------------------------------------------------------ATGAAAG---- 7
Query 1185 CAATGAAGTTTTTTCCTGTATCAAATATCTGGCAATTTACAATTGCCCTCATCTACACAACCCATACAATTGGA 1258
||| ||||.||| ||
Sbjct 8 ---------------------------TCT----------------CCTCTTCT-CA----------------- 20
Query 1259 TCTCAGACCACTCAAGATGGACTCGATTGGTTGATATCAACCTAGTACGGTGCCATGCTTTGAAGCTGGACTCT 1332
|||||||||.||.||||..|||.||||||||||||||||.||.|||||||||||||||||||||||.|||
Sbjct 21 ----AGACCACTCGAGGTGGATGCGACTGGTTGATATCAACCTCGTGCGGTGCCATGCTTTGAAGCTGGATTCT 90
Query 1333 TTTGGCCAGTTTATTGAATTATTACCCAGCCTAGAGTTTATTTCACTGGATCAGATGTTTCGTGAACCACCCAA 1406
||||||||||||.||||||||||.||||||||.||.||||||||.|||||.||||||||.|||||.||||||||
Sbjct 91 TTTGGCCAGTTTGTTGAATTATTGCCCAGCCTGGAATTTATTTCTCTGGACCAGATGTTCCGTGAGCCACCCAA 164
Query 1407 GGGTTGTGCTCGAGTTGGTCTGAGTGCAGGCACAGGAATTGGTGTTTCATCAGCTCTTGTTAGCAACCAGAACT 1480
|||.||||||||||||||||||||||||||.||.||||||||.|||||.|||||.|||||.|||||||||||.|
Sbjct 165 GGGCTGTGCTCGAGTTGGTCTGAGTGCAGGAACTGGAATTGGGGTTTCCTCAGCGCTTGTCAGCAACCAGAATT 238
Query 1481 CCAACAATGAC---GATAATAATGC-CCAGAATAACAATGCCAACATCCACGACAACAATCACCATCATCCAGA 1550
||||||||||| ||.|||||||| ||| ||||||||.||||||.||||.||.||||||||||||||.|||||
Sbjct 239 CCAACAATGACAATGACAATAATGCTCCA-AATAACAACGCCAACCTCCATGATAACAATCACCATCACCCAGA 311
Query 1551 TGACTCAGACGAGGAGAATGACTTTCGGCAAGATCTGCAGCCAGGAGA-GCAGCAGTTTGCAGCTGACGCATTA 1623
|||.||.||.||.||.|||||||||||.|.|||.||.||..||||||| ||| ||.||||||||.||.||.||.
Sbjct 312 TGATTCGGATGACGACAATGACTTTCGTCCAGACCTACAAGCAGGAGAGGCA-CAATTTGCAGCCGATGCGTTG 384
Query 1624 AATGAGATGGAAGACATCGTCCAAGAAGATGGAGAGGTGGTGGCCGAGAGTGGAAATAATACTCCAGCTCACAG 1697
|||||||||||||||||.|||||.|||||||||||..||||.|||||||||||||||..||..||||||||||.
Sbjct 385 AATGAGATGGAAGACATGGTCCAGGAAGATGGAGAACTGGTAGCCGAGAGTGGAAATGGTATGCCAGCTCACAA 458
Query 1698 CCAGGCAATTATTCCTGTGGATGTTGATGAGGAACAAGCAGGACCCAGTGGTCTTCAGCGTGTAGTAAAACCAA 1771
.|.||.|.||.||||||||||||.|||||||||||||||||||||.||||||||.||.||.||.||||||||.|
Sbjct 459 TCGGGAAGTTCTTCCTGTGGATGCTGATGAGGAACAAGCAGGACCTAGTGGTCTACAACGCGTGGTAAAACCTA 532
Query 1772 CCTCAATTACTGTTCATGATTCAGAGAGTGATGATGAAGAAGATAGTCTAGAACTCCAAGAAGTCTGGATTCCT 1845
|..|||||.|||.|||.|||||||||||.||||||||||||||||||.||||||||||||||||||||..||||
Sbjct 533 CACCAATTGCTGATCACGATTCAGAGAGCGATGATGAAGAAGATAGTTTAGAACTCCAAGAAGTCTGGGCTCCT 606
Query 1846 AAGAACGGTACTCGGCGTTACTCTGAACGTGAAGAAAAAACTGGAGAGTCAGTGCAGTCCAGAGAA-------- 1911
|||||.||.||.|||||||||||.||.||.||||||||.||||||||.||||..||||||||.|||
Sbjct 607 AAGAATGGCACCCGGCGTTACTCAGAGCGGGAAGAAAAGACTGGAGACTCAGGACAGTCCAGGGAAACGGCAGT 680
Query 1912 -----------------------TT------------------------------------------------- 1913
||
Sbjct 681 AAGTGGGAAAGGCAAGACTCCACTTCGAAAGAGGTGCAACAACTCCCACCAGACGGGCCAGGCGAAGCCGTTTC 754
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 755 CCCTGGAGGAGAGCAGCTGTGAGAAAGGCTGTCAGGTGACCAGTGAGCAGATCAAAGCCGATATGAAAGCAGCT 828
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 829 AGGGATGTTTCTGAAAAGAAAAAATCCAAGGATGTCTATCCCAGCTGCAGCAGCAGCAGCAGCAGCACAGCCGC 902
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 903 CAGCACAGCGGGAAACGCCAGCTCACCCAGCACTGCTTCCCAGAGCCCGGACTTTGCAAGGACGGTGACCAGCA 976
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 977 GCGGCTCTTCCGAGCCGAGCCCTCCAGAAGTAGATGTATCCAGGCAGTGTGTCTGCTCCCCTGGTGGGTCAGAG 1050
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 1051 GACTCTGAGGCCATGGAGGAGGGAGATGCAGAGAGCTCTGTCTGCCCCAGATGCTGCTGTCTCAGGCCCCAGGA 1124
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 1125 GTCTCAAAGGAGAACTGGCAGGTGTTCTGATGAGGAGCGTCCTTCAACCAGCCGAGCCTGTGTTGTGAATGGCG 1198
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 1199 CGGATGGTACGAGATCCGCCTTTTCCTTTAGGACTCTGCCACAAGGGGGGTCTTCAGGCCCAGCACATGATGAG 1272
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 1273 AGGACTAATGGGAGTGGCTGTGGGGCTACAGGTGAGGACAGGAGGGGGAGCTCCCAGCCTGAGAGTTGTGACGT 1346
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 1347 GCAGTCTAATGAAGACTATCCTCGGAGGCCCCTAACCAGGGCCAGGAGCAGACTGTCCCATGTACCGCTGATAT 1420
Query 1914 ----GTCAGAAGTAGCCAAAACAAAGCCACGTCACGCCATGAAACGGAAGCGGACAGCAGATAAATCCACTAGT 1983
|||||||||.|||||||||||||||.|.||.|||||||||||.|||||.||.||||||||.||.||.||.
Sbjct 1421 CTGAGTCAGAAGTTGCCAAAACAAAGCCATGCCATGCCATGAAACGAAAGCGAACTGCAGATAAGTCTACCAGC 1494
Query 1984 ACAAGTGATCCTGTGATCGAGGATGACCATGTGCAGGTTCTTGTATTAAAATCCAAGAATCTTGTTGGAGTCAC 2057
||.|||||.||||||||.||.||||||||.||.|||||||||||||||||||||||.|||||||||||||||||
Sbjct 1495 ACCAGTGACCCTGTGATTGAAGATGACCACGTACAGGTTCTTGTATTAAAATCCAAAAATCTTGTTGGAGTCAC 1568
Query 2058 TATGACCAATTGTGGAATCACAGATCTAGTGCTAAAAGACTGTCCAAAGATGATGTTCATCCATGCTACCAGGT 2131
.|||||||||||||||||||||||||||||.||.||||||||.||.||||||||||||||||||||||||||||
Sbjct 1569 AATGACCAATTGTGGAATCACAGATCTAGTACTGAAAGACTGCCCCAAGATGATGTTCATCCATGCTACCAGGT 1642
Query 2132 GCAGGGTACTAAAACATTTAAAGGTAGAAAATGCACCAATTGTAAACCGATTTGACTATGCACAGTGCAAGAAA 2205
||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 GCAGGGTACTGAAGCATTTAAAGGTAGAAAATGCACCAATTGTAAACCGATTTGACTATGCACAGTGCAAGAAA 1716
Query 2206 CTGAACATGGATCAGGTACTAGACCAGATACTAAGAATGCCACCCGAGAGAAACCGCATCATATACCTACGCCC 2279
||.||.|||||.||||||||||||||.|||||.||.|||||.||.|||||.|||||.|||||.|||||.|||||
Sbjct 1717 CTAAATATGGACCAGGTACTAGACCAAATACTGAGGATGCCTCCGGAGAGGAACCGGATCATCTACCTGCGCCC 1790
Query 2280 AATGCAGCAGGTGGACACTCTAACTTTGGAGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTATTA 2353
||||||||||||.|||||.||||||.|||||||||||||.||.||.||.||||||||||||||||||||.||.|
Sbjct 1791 AATGCAGCAGGTAGACACACTAACTCTGGAGCAGAAGCTCTTCAGCGGGCCCTACCCCTATCACATCTGCATCA 1864
Query 2354 TCCATGAATTCAGTAACCCTCCCAATGTCCGGAATAAGGTGCGCATTCGCAGCTGGATGGACACTATAGCAAAC 2427
||||.||.|||||.||.||||||||.||.|||||.|||||||||||.||||..|||||||||||.|||||.|||
Sbjct 1865 TCCACGAGTTCAGCAATCCTCCCAACGTGCGGAACAAGGTGCGCATCCGCAATTGGATGGACACGATAGCCAAC 1938
Query 2428 ATCAATCAAGAGCTCATTAAATATGAATTCTTCCCTGAAGCCACTCGAAGTGAAGAAGACTTAAAGAAATACCC 2501
|||||||||||||||||||||||.||||||||||..|||||||||||.|.||||||.||.||||||||.|||||
Sbjct 1939 ATCAATCAAGAGCTCATTAAATACGAATTCTTCCTGGAAGCCACTCGGACTGAAGAGGATTTAAAGAAGTACCC 2012
Query 2502 CAAGTACCCCTGGGGGAGAGAAATCTATACTTTAGAAGGTGTTGTGGATGGAGCTCCATATTCCATGATTTCTG 2575
.|||||.||||||||||||||||||||.||||||||.||||||||.||||||||.||.||||||||||||||.|
Sbjct 2013 TAAGTATCCCTGGGGGAGAGAAATCTACACTTTAGAGGGTGTTGTAGATGGAGCGCCGTATTCCATGATTTCCG 2086
Query 2576 ACTTCCCTTGGCTGAGGTCATTACGAGCTGCAGAGCCCAACAGCTTCGCTCGATACGACTTTGAAGACGATGAA 2649
||||||||||||||||||||.|.||..|.|||||||||||||||||.||..||||.||.||||||||.||||||
Sbjct 2087 ACTTCCCTTGGCTGAGGTCACTGCGGACCGCAGAGCCCAACAGCTTTGCCAGATATGATTTTGAAGATGATGAA 2160
Query 2650 GAAAGCACTATCTATGCTCCTAGAAGGAAAGGACAGCTGTCTGCAGACATCTGTATGGAAACAATAGGAGAGGA 2723
||.|||||.||||||||||||.||||.|||||.|||.|||||||||||||.||||||||.||||||||||||||
Sbjct 2161 GAGAGCACCATCTATGCTCCTCGAAGAAAAGGGCAGTTGTCTGCAGACATTTGTATGGAGACAATAGGAGAGGA 2234
Query 2724 AATTTCAGAGATGCGTCAGATGAAGAAGGGTGTATTTCAGCGAGTAGTGGCAATTTTTATCCACTATTGTGATG 2797
.||.|||||||||||.||||||||||.|||..||||||||||||||||.||.||||||||||||||.|||||||
Sbjct 2235 GATCTCAGAGATGCGCCAGATGAAGAGGGGCATATTTCAGCGAGTAGTAGCGATTTTTATCCACTACTGTGATG 2308
Query 2798 TCAATGGAGAGCCAGTTGAAGATGACTACATT 2829
||||||||||||||||||||||.|||||||||
Sbjct 2309 TCAATGGAGAGCCAGTTGAAGACGACTACATT 2340
