Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12742
- Subject:
- XR_429222.4
- Aligned Length:
- 4580
- Identities:
- 1328
- Gaps:
- 3248
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTCCGTCCCGCCCCGCCGCCGGTGCAGTGTTGGAAGCTCCGGTTCTCCCGGAAGTGGCCCAGGTCTCTCTGTCG 74
Query 1 -----------------------------------------------ATGGCGGAGGCGGCGCTGTTGCTGCTG 27
|||||||||||||||||||||||||||
Sbjct 75 GGGTCCCCTCCATCTCGCTGCTGCTGAAGGCCGCGAGGGCGGCGGCGATGGCGGAGGCGGCGCTGTTGCTGCTG 148
Query 28 CCTGAGGCGGCGGCGGAGCGGGACGCTAGGGAAAAGCTGGCTCTCTGGGATCGGAGACCGGACACGACGGCGCC 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CCTGAGGCGGCGGCGGAGCGGGACGCTAGGGAAAAGCTGGCTCTCTGGGATCGGAGACCGGACACGACGGCGCC 222
Query 102 GCTGACCGACAGGCAGACGGACTCGGTATTGGAGCTGAAGGCGGCGGCAGAGAACTTGCCGGTGCCAGCTGAGC 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GCTGACCGACAGGCAGACGGACTCGGTATTGGAGCTGAAGGCGGCGGCAGAGAACTTGCCGGTGCCAGCTGAGC 296
Query 176 TTCCAATTGAAGACTTGTGCAGTTTAACATCCCAGTCACTGCCCATTGAACTGACTTCAGTAGTGCCTGAATCT 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTCCAATTGAAGACTTGTGCAGTTTAACATCCCAGTCACTGCCCATTGAACTGACTTCAGTAGTGCCTGAATCT 370
Query 250 ACAGAAGACATTCTCTTGAAGGGCTTCACTTCCTTAGGAATGGAAGAAGAAAGAATTGAAACCGCACAGCAGTT 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ACAGAAGACATTCTCTTGAAGGGCTTCACTTCCTTAGGAATGGAAGAAGAAAGAATTGAAACCGCACAGCAGTT 444
Query 324 TTTCTCATGGTTTGCAAAGCTGCAAACTCAGATGGATCAAGATGAAGGAACTAAATATAGACAGATGAGGGATT 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TTTCTCATGGTTTGCAAAGCTGCAAACTCAGATGGATCAAGATGAAGGAACTAAATATAGACAGATGAGGGATT 518
Query 398 ACTTGTCTGGGTTTCAGGAGCAGTGTGATGCTATATTGAATGATGTAAACAGTGCTCTTCAGCATCTGGAGTCT 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ACTTGTCTGGGTTTCAGGAGCAGTGTGATGCTATATTGAATGATGTAAACAGTGCTCTTCAGCATCTGGAGTCT 592
Query 472 TTGCAGAAACAGTATCTTTTTGTGTCCAATAAGACAGGAACCCTACATGAAGCCTGTGAACAGCTCCTAAAAGA 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TTGCAGAAACAGTATCTTTTTGTGTCCAATAAGACAGGAACCCTACATGAAGCCTGTGAACAGCTCCTAAAAGA 666
Query 546 ACAGTCGGAACTTGTTGATCTGGCTGAAAACATTCAACAAAAGCTTTCCTATTTTAACGAATTGGAAACTATTA 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ACAGTCGGAACTTGTTGATCTGGCTGAAAACATTCAACAAAAGCTTTCCTATTTTAACGAATTGGAAACTATTA 740
Query 620 ACACAAAATTGAATTCCCCTACATTGTCGGTGAATAGTGACGGATTTATACCTATGCTGGCCAAGTTAGATGAT 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACACAAAATTGAATTCCCCTACATTGTCGGTGAATAGTGACGGATTTATACCTATGCTGGCCAAGTTAGATGAT 814
Query 694 TGTATAACATATATCTCATCTCATCCTAATTTTAAAGATTATCCCATATATTTGCTGAAGTTTAAACAGTGTCT 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TGTATAACATATATCTCATCTCATCCTAATTTTAAAGATTATCCCATATATTTGCTGAAGTTTAAACAGTGTCT 888
Query 768 TTCTAAAGCTTTGCACCTCATGAAGACATATACTGTGAACACACTACAGACCCTCACAAGTCAGTTACTGAAAA 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TTCTAAAGCTTTGCACCTCATGAAGACATATACTGTGAACACACTACAGACCCTCACAAGTCAGTTACTGAAAA 962
Query 842 GGGATCCTTCATCTGTACCTAATGCAGACAATGCCTTCACATTATTTTATGTGAAATTTCGAGCTGCTGCCCCC 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GGGATCCTTCATCTGTACCTAATGCAGACAATGCCTTCACATTATTTTATGTGAAATTTCGAGCTGCTGCCCCC 1036
Query 916 AAAGTCAGAACTCTTATTGAACAAATAGAACTGCGGTCTGAAAAAATACCTGAATACCAACAACTGCTAAATGA 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AAAGTCAGAACTCTTATTGAACAAATAGAACTGCGGTCTGAAAAAATACCTGAATACCAACAACTGCTAAATGA 1110
Query 990 TATCCACCAGTGTTACCTTGATCAGCGGGAGCTCCTTTTGGGCCCTAGTATTGCTTGCACTGTTGCAGAGTTAA 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TATCCACCAGTGTTACCTTGATCAGCGGGAGCTCCTTTTGGGCCCTAGTATTGCTTGCACTGTTGCAGAGTTAA 1184
Query 1064 CCAGCCAAAATAATAGAGATCACTGTGCCTTGGTTCGTAGTGGCTGTGCCTTCATGGTTCATGTCTGCCAGGAT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CCAGCCAAAATAATAGAGATCACTGTGCCTTGGTTCGTAGTGGCTGTGCCTTCATGGTTCATGTCTGCCAGGAT 1258
Query 1138 GAACACCAACTTTACAATGAATTTTTCACAAAACCAACATCAAAATTAGATGAGCTTTTGGAGAAACTGTGTGT 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GAACACCAACTTTACAATGAATTTTTCACAAAACCAACATCAAAATTAGATGAGCTTTTGGAGAAACTGTGTGT 1332
Query 1212 GTCATTGTATGATGTCTTCAGGCCATTGATCATTCATGTTATTCACTTAGAGACTCTGTCGGAACTTTGTGGGA 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GTCATTGTATGATGTCTTCAGGCCATTGATCATTCATGTTATTCACTTAGAGACTCTGTCGGAACTTTGTGGGA 1406
Query 1286 TTCTTAAAAATGAAGTGCTTGAAGATCATGTGCAGAACAATGGTAAA--------------------------- 1332
|||||||||||||.||||||||||||||||||||||||||||.|.|.
Sbjct 1407 TTCTTAAAAATGAGGTGCTTGAAGATCATGTGCAGAACAATGCTGAGCAACTGGGGGCATTTGCAGCTGGAGTC 1480
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 1481 AAGCAGATGTTAGAAGATGTACAGGAGCGGCTCGTCTACCGAACCCACATCTATATTCAGACGGACATCACGGG 1554
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 1555 CTATAAACCAGCTCCTGGAGATCTGGCATATCCCGATAAGTTAGTCATGATGGAGCAGATTGCACAGAGTTTGA 1628
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 1629 AAGATGAACAGAAGAAGGTACCTTCAGAAGCTTCATTTTCAGATGTTCACTTAGAAGAAGGAGAGTCTAACAGT 1702
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 1703 CTGACAAAATCTGGTTCAACAGAATCCCTCAATCCTAGACCACAGACCACAATTTCTCCAGCAGATCTTCATGG 1776
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 1777 AATGTGGTATCCTACGGTTCGAAGAACTCTTGTCTGTCTCTCCAAATTATACAGATGCATAGATAGGGCAGTGT 1850
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 1851 TCCAAGGATTATCACAGGAAGCATTGTCTGCCTGCATTCAGTCCTTACTTGGAGCGTCAGAGTCTATCAGCAAA 1924
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 1925 AACAAGACTCAGATTGATGGACAACTTTTCTTAATTAAGCACCTTTTGATACTTCGTGAACAAATTGCTCCATT 1998
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 1999 TCACACTGAATTCACCATTAAGGAAATTTCCCTGGACCTCAAGAAAACTAGAGATGCAGCATTTAAAATCCTGA 2072
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2073 ACCCTATGACTGTCCCAAGATTTTTTAGGCTGAATAGCAACAATGCCTTGATAGAGTTCTTGTTGGAGGGTACT 2146
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2147 CCTGAGATAAGAGAACATTATCTTGACTCTAAAAAAGACGTAGACCGTCATCTGAAATCGGCCTGTGAGCAGTT 2220
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2221 TATTCAGCAGCAGACCAAGCTGTTTGTAGAACAGCTGGAGGAGTTCATGACAAAGGTTTCAGCGTTAAAAACAA 2294
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2295 TGGCCAGTCAGGGAGGCCCCAAGTATACTCTCTCACAGCAGCCTTGGGCACAACCAGCAAAGGTCAATGACCTT 2368
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2369 GCGGCAACTGCATATAAGACAATAAAAACAAAGCTGCCTGTGACATTGAGAAGTATGTCCTTGTACCTATCCAA 2442
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2443 TAAAGATACCGAGTTCATCTTGTTTAAACCTGTGAGGAATAATATTCAGCAAGTCTTCCAGAAGTTCCACGCTC 2516
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2517 TGTTAAAGGAAGAGTTCAGCCCTGAAGACATCCAGATCATTGCCTGTCCATCTATGGAACAGTTATAGTCACTT 2590
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2591 GCATGAATGTAGATGTGGAGTACTTGATCATAAGATCCATTTTATGGCAGAAGACATTATTTTTCTGAGCCTTC 2664
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2665 TGCTGTTGGTTTCTAAATAAGCAGGCCAGCCGGGCTGTGCACCTAAATGTCTGTCTGGGAGGAGCAGGCTGAGA 2738
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2739 AGTCTTGCAGTCTGCAGGACACCGAGGAATCGTATGTGGGAACGTCCCCGAGAACCACACGAGCGTGCTGCTCA 2812
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2813 GTGCTGACTGCAGAATGAAATAGAAGCAAAGTGTTACAGGATCAGTGTTTTCTTTTCTAAAACATCAAAATGCC 2886
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2887 AAAGATTAATCTGTGATTGGTGATAACTGCCTCGTTTAAATGGTCACAAGAAATGTGAAGAGAGAGCTAGGGCA 2960
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2961 GACATGCAGTGAAATGGTTCTTTGTTAAAAATGTGCAATAAAAATAGATTACAATAAGTAGTGCAAAGAACTTT 3034
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3035 ACAGAAATCAAGCGAATTAGAAGGCCTGTAAGAGTAAGGTTTGCTAAAACGTGAAACACTGTAACACTTTTAAC 3108
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3109 CACTGAGCATTCCACAGTGAAATGTTATTTCTATGCTCTTATTTAATGTAATGTTTCTCCTGTCATTTTTGAAG 3182
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3183 TTGAGTTTGGAGTAGATTGGTTGCTTCTGAGAACACATTCTGCCTTCCTGGGAAGTCGGGGTGTCATCCTTTCC 3256
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3257 TCTGTTTGATGTGAGGTAGTTTAAAGATACAAGGACTTTGTGTGAAGCTCCAGCATCTGTGCCCCTTGAATTGC 3330
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3331 TTAGGTGCAGACAGTTCTAAAGCAAGGAGCTGCAGCATTCTCATCATAGATACGTGCAGTATCTTTAATGAGTA 3404
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3405 TCTTCATGGTATGATAGTGTGTGTTTGTGAGTGCGAAGTACCAATTAAGGTGTCTTAAATTTGGCGCATAGAGG 3478
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3479 AGAGAAGGAAACCTGAGGAGTAGTGTTCCTCCTGAATGAAGGTTCAGGTCACCAGCCTTCTGTACACTGCCTTT 3552
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3553 GGTTTTAGCAGTTCTTTGAAAAGCAAACACTTTCATGTCCTGTCTATTCATTCAGCTGGCTGTGCTGTGCTGTG 3626
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3627 GACCAGCTGTGTGGATCTCTAGCCCAGCTACAGCAGAATACATTTTACCAGCAAACCTAAGGATGACAAACACT 3700
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3701 ATCCACATCTGAAAACTACCACACCATATCAGGGATCATAAATTATGCATATCTATGAATTTTCCAACAAATTC 3774
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3775 CTACTTCCTGATTGGATTGGTTTTGCCGCTGATGTTAAGGCAGCCAGCTTCTTAGTTCAAAAAGAATTCTGAGT 3848
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3849 TTTTCAAACACTAGTCTAGAGGTGGACATTGTCAGGGGTTCTGGAATGGGACCAGGGGACCTTTTGGTGCAGTG 3922
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3923 GGTGCCTGTAACTCATTAGACGTACTGAGGCAGCACTTCTGCAGGGTGCATACCCTGATTGTTGTCATTTGTAA 3996
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3997 CAGGTCACTTCCTTTTCACTCAGTTTAAATTGGTGATGGACGTTGCTTGATTGAGCTTATTACTCTCTATTTTG 4070
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 4071 AGAAGGTAGAAGGTAAGAGGGCCCATATTCATTCTTTGCCATGAAATGAATGAATTAGGAAGATTGTATTTACT 4144
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 4145 TAACTGTTTTTTAAATACATGTTTAATGAAATAAACTGTAAAATATCCAGTTTTGTGTATTATATGTACATTTG 4218
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 4219 ATTTTTAATAGCCTTTCCAAAGAAATGAGGGCATGATTATTGTACAGTAAGTACGTGACTGATTTAATTTGATT 4292
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 4293 TACAGAGCGGAGTGTGTTCTTATAAAAATATTTAATGACATTGGTTCTTGTCTTTTGATCTTTTATTTCTGAAA 4366
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 4367 CACTCAAACACCTTACAAAGTGCTGAGTAGGTAATAGTGACCCAACTTGTTTGCTAAATGATTATTTGTTTAAA 4440
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 4441 TCTGTACAGTTTTAAGTGTTCACTTATACAAAGAGTGTATATACTTTCAAATAATTTAAAATGCTTTATATTAT 4514
Query 1333 ------------------------------------------------------------------ 1332
Sbjct 4515 TTGGCTAGAAATTGCTGTTTTTAATAAATGTGAATTTTTTAAAAATAAAGATTTTTGCTTCCTACC 4580
