Construct: ORF ccsbBroad304_12742

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000999.1_s304c1, BRDN0000400632
Derived from:
ccsbBroadEn_12742
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
COG3 (83548)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12742
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83548 COG3 component of oligomeric gol... XM_011535267.3 73.2% 73.1% (many diffs)
2 human 83548 COG3 component of oligomeric gol... NM_031431.4 53.4% 53.3% (many diffs)
3 human 83548 COG3 component of oligomeric gol... XR_001749695.2 31% (many diffs)
4 human 83548 COG3 component of oligomeric gol... XR_001749696.2 30.6% (many diffs)
5 human 83548 COG3 component of oligomeric gol... XR_429222.4 28.9% (many diffs)
6 human 83548 COG3 component of oligomeric gol... XM_011535266.2 26.4% 26.3% (many diffs)
7 mouse 338337 Cog3 component of oligomeric gol... XM_006519148.3 50% 52.8% (many diffs)
8 mouse 338337 Cog3 component of oligomeric gol... NM_177381.3 48% 50.8% (many diffs)
9 mouse 338337 Cog3 component of oligomeric gol... XM_011245092.1 23.7% 25.4% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1398
ORF length:
1332
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc ggaggcggcg ctgttgctgc tgcctgaggc ggcggcggag cgggacgcta
121gggaaaagct ggctctctgg gatcggagac cggacacgac ggcgccgctg accgacaggc
181agacggactc ggtattggag ctgaaggcgg cggcagagaa cttgccggtg ccagctgagc
241ttccaattga agacttgtgc agtttaacat cccagtcact gcccattgaa ctgacttcag
301tagtgcctga atctacagaa gacattctct tgaagggctt cacttcctta ggaatggaag
361aagaaagaat tgaaaccgca cagcagtttt tctcatggtt tgcaaagctg caaactcaga
421tggatcaaga tgaaggaact aaatatagac agatgaggga ttacttgtct gggtttcagg
481agcagtgtga tgctatattg aatgatgtaa acagtgctct tcagcatctg gagtctttgc
541agaaacagta tctttttgtg tccaataaga caggaaccct acatgaagcc tgtgaacagc
601tcctaaaaga acagtcggaa cttgttgatc tggctgaaaa cattcaacaa aagctttcct
661attttaacga attggaaact attaacacaa aattgaattc ccctacattg tcggtgaata
721gtgacggatt tatacctatg ctggccaagt tagatgattg tataacatat atctcatctc
781atcctaattt taaagattat cccatatatt tgctgaagtt taaacagtgt ctttctaaag
841ctttgcacct catgaagaca tatactgtga acacactaca gaccctcaca agtcagttac
901tgaaaaggga tccttcatct gtacctaatg cagacaatgc cttcacatta ttttatgtga
961aatttcgagc tgctgccccc aaagtcagaa ctcttattga acaaatagaa ctgcggtctg
1021aaaaaatacc tgaataccaa caactgctaa atgatatcca ccagtgttac cttgatcagc
1081gggagctcct tttgggccct agtattgctt gcactgttgc agagttaacc agccaaaata
1141atagagatca ctgtgccttg gttcgtagtg gctgtgcctt catggttcat gtctgccagg
1201atgaacacca actttacaat gaatttttca caaaaccaac atcaaaatta gatgagcttt
1261tggagaaact gtgtgtgtca ttgtatgatg tcttcaggcc attgatcatt catgttattc
1321acttagagac tctgtcggaa ctttgtggga ttcttaaaaa tgaagtgctt gaagatcatg
1381tgcagaacaa tggtaaatgc ccaactttct tgtacaaagt ggttggtaag cctatcccta
1441accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
1501agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)