Nucleotide Global Alignment

Description

• Query: ccsbBroad304_12758
• Subject: NM_001170535.3
• Aligned Length: 1955
• Identities: 1516
• Gaps: 346

Alignment

Query    1  ATGCAGCTGG------------AA-----GCCC------TGAA---------CC-----------TGCTGCACA  31
            |||..| |||            ||     ||||      ||||         ||           |||.||.|.
Sbjct    1  ATGTCG-TGGCTCTTCGGCATTAACAAGGGCCCCAAGGGTGAAGGCGCGGGGCCGCCGCCGCCTTTGCCGCCCG  73

Query   32  CACTAGTCTGGG------------------CACGGAGTCTCTG-----CCGTGCCGGAGC------------TG  70
            |.| ||.|.|||                  |.||| ||   ||     ||| |||||.||            .|
Sbjct   74  CGC-AGCCCGGGGCCGAGGGCGGCGGGGACCGCGG-GT---TGGGAGACCG-GCCGGCGCCCAAGGACAAATGG  141

Query   71  TGCA-----GAC--------ACAGGAGCG-GCTGTC-AGGCAG-------------------------TGCCA-  103
            .|||     |||        .|.|||||| ||.|.| ||||.|                         ||||| 
Sbjct  142  AGCAACTTCGACCCCACCGGCCTGGAGCGCGCCGCCAAGGCGGCGCGCGAGCTGGAGCACTCGCGTTATGCCAA  215

Query  104  ----GCCCTGA-------------GCAAGTGC--------CAGCTGGTG----AGTGCTGTGCTCTGCAGGAGT  148
                |||||||             |||.|.||        |||.|||.|    ||| |...||||  .|.||||
Sbjct  216  GGACGCCCTGAATCTGGCACAGATGCAGGAGCAGACGCTGCAGTTGGAGCAACAGT-CCAAGCTC--AAAGAGT  286

Query  149  ATGAGGCCGCCGTGGAGCAGCTCAAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGC  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  287  ATGAGGCCGCCGTGGAGCAGCTCAAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGC  360

Query  223  GAGGAGACCCGGCAGCACCAGGCCAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACT  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  GAGGAGACCCGGCAGCACCAGGCCAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACT  434

Query  297  GAAGCAGCAGCAACTTCTCAATGAGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGC  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  435  GAAGCAGCAGCAACTTCTCAATGAGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGC  508

Query  371  GGCGAGCCACCGTGGAGCGGGAGATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGACCGAGGCCCGG  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct  509  GGCGAGCCACCGTGGAGCGGGAGATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGGCCGAGGCCCGG  582

Query  445  GCGCGCGCCAAGGCCGAGCGGGAGAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGTCCGAGCACCG  518
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct  583  GCGCGCGCCAAGGCCGAGCGGGAGAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGGCCGAGCACCG  656

Query  519  TCAGACCGTCTTGGAGTCCATCAGGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACC  592
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct  657  TCAGACCGTCTTGGAGTCCATCAGGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACT  730

Query  593  GGGACAAAGTGACAGCCACGGTGGCTGGGCTGACGCTGCTGGCTGTCGGGGTCTACTCAGCCAAGAATGCGACA  666
            ||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.|| 
Sbjct  731  GGGACAAAGTGACAGCCACGGTGGCTGGGCTGACGCTGCTGGCTGTTGGGGTCTACTCAGCCAAGAATGCCAC-  803

Query  667  GC-CGTCACTGGCCGCTTCATCGAGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGG  739
            || .|||.|.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  804  GCTTGTCGCCGGCCGCTTCATCGAGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGG  877

Query  740  TGCTGGAGGCGCTGCGGCACCCCATCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGTGCTGGAGGGT  813
            ||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct  878  TGCTTGAGGCGCTGCGGCACCCCATCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGCGCTGGAGGGT  951

Query  814  GTTGTGCTTAGTCCCAGCCTGGAAGCACGGGTGCGCGACATCGCCATAGCAACCAGGAACACCAAGAAGAACCG  887
            ||||||||.||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct  952  GTTGTGCTCAGTCCCAGCCTGGAAGCACGGGTGCGCGACATCGCCATAGCAACAAGGAACACCAAGAAGAACCG  1025

Query  888  GGGCCTGTACAGGCACATCCTGCTGTATGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCC  961
            ..|||||||||||.||||||||.||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026  CAGCCTGTACAGGAACATCCTGATGTACGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCC  1099

Query  962  TGCACTCAGGCATGGACTACGCCATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCC  1035
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100  TGCACTCAGGCATGGACTACGCCATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCC  1173

Query 1036  ATGCACAAGCTCTTTGACTGGGCCAATACCAGCCGGCGCGGCCTCCTGCTCTTCATGGATGAAGCAGACGCCTT  1109
            |||||||||||||||||||||||||||||||||||||||||||||||||||||..||||||||||.||||||||
Sbjct 1174  ATGCACAAGCTCTTTGACTGGGCCAATACCAGCCGGCGCGGCCTCCTGCTCTTTGTGGATGAAGCGGACGCCTT  1247

Query 1110  CCTTCGGAAGCGAGCCACTGAGGAGATAAGCAAGGACCTCAGAGCCACACTGAACGCCTTCCTGTACCACATGG  1183
            ||||||||||||||||||.|||.||||||||.||||||||||.|||||||||||||||||||||||||.||.||
Sbjct 1248  CCTTCGGAAGCGAGCCACCGAGAAGATAAGCGAGGACCTCAGGGCCACACTGAACGCCTTCCTGTACCGCACGG  1321

Query 1184  GCCAACACAGCAACAAATTCATGCTGGTCCTGGCCAGCAATCTGCCTGAGCAGTTCGACTGTGCCATCAACAGC  1257
            ||||.|||||||||||.|||||||||||||||||||||||.|..||.||||||||||||||.||||||||...|
Sbjct 1322  GCCAGCACAGCAACAAGTTCATGCTGGTCCTGGCCAGCAACCAACCAGAGCAGTTCGACTGGGCCATCAATGAC  1395

Query 1258  CGCATTGACGTGATGGTCCACTTCGACCTGCCGCAGCAGGAGGAGCGGGAGCGCCTGGTGAGACTGCATTTTGA  1331
            |||||..|.|.|||||||||||||||||||||...|||||||||.||||||||||||||||||.||.|||||||
Sbjct 1396  CGCATCAATGAGATGGTCCACTTCGACCTGCCAGGGCAGGAGGAACGGGAGCGCCTGGTGAGAATGTATTTTGA  1469

Query 1332  CAACTGTGTTCTTAAGCCGGCCACAGAAGGAAAACGGCGCCTGAAGCTGGCCCAGTTTGACTACGGGAGGAAGT  1405
            |||.|.|||||||||||||||||||||||||||.|.||||||||||||||||||||||||||||||||||||||
Sbjct 1470  CAAGTATGTTCTTAAGCCGGCCACAGAAGGAAAGCAGCGCCTGAAGCTGGCCCAGTTTGACTACGGGAGGAAGT  1543

Query 1406  GCTCGGAGGTCGCTCGGCTGACGGAGGGCATGTCGGGCCGGGAGATCGCTCAGCTGGCCGTGTCCTGGCAGGCC  1479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544  GCTCGGAGGTCGCTCGGCTGACGGAGGGCATGTCGGGCCGGGAGATCGCTCAGCTGGCCGTGTCCTGGCAGGCC  1617

Query 1480  ACGGCATATGCCTCCAAGGACGGGGTCCTCACTGAGGCCATGATGGACGCCTGTGTGCAAGATGCTGTCCAGCA  1553
            |||||.|||||||||.|||||||||||||.||.|||||||||||||||.||.|.||||||||||||||||||||
Sbjct 1618  ACGGCGTATGCCTCCGAGGACGGGGTCCTGACCGAGGCCATGATGGACACCCGCGTGCAAGATGCTGTCCAGCA  1691

Query 1554  GTACCGACAGAAGATGCGCTGGCTGAAGGCGGAGGGGCCTGGGCGCGGGGTCGAGCACCCCCTATCCGGAGTCC  1627
            |.|||..|||||||||.||||||||||||||||.|||||||||||.||||.|||||.|.|||.||||       
Sbjct 1692  GCACCAGCAGAAGATGTGCTGGCTGAAGGCGGAAGGGCCTGGGCGTGGGGACGAGCCCTCCCCATCC-------  1758

Query 1628  AAGGCGAGACCCTCACCTCATGGAGCCTGGCCACGGACCCCTCCTACCCCTGCCTTGCCGGCCCCTGCACATTT  1701
                                                                                      
Sbjct 1759  --------------------------------------------------------------------------  1758

Query 1702  AGGATATGCTCCTGGATGGGGACTGGGCTGTGCCCAGGGCCTCTGTCCCCCAGGATGTCTTGTGGTGGCGGTCG  1775
                                                                                      
Sbjct 1759  --------------------------------------------------------------------------  1758

Query 1776  GCCGTTCTGCCCCCCAGGGCACCCCCTGTTG  1806
                                           
Sbjct 1759  -------------------------------  1758