Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12758
- Subject:
- NM_001170536.2
- Aligned Length:
- 1811
- Identities:
- 1444
- Gaps:
- 295
Alignment
Query 1 ATGCAGCTGGAAGCCCTGAACCTGCTGCACACACTAGTCTGGGCACGGAGTCTCTGCCGTGCCGGAGCTGTGCA 74
.|||.||| |||
Sbjct 1 ----------------------------------------------------------ATGCAGGA-----GCA 11
Query 75 GACACAGGAGCGGCTGTCAGGCAGTGCCAGCCCT-GAGCA--AGTGCCAGCTGGTGAGTGCTGTGCTCTGC-AG 144
||| ||| ||||| | ||||| |||.|.|||| | |.
Sbjct 12 GAC---------GCT-----GCAGT--------TGGAGCAACAGTCCAAGCT------------------CAAA 45
Query 145 GAGTATGAGGCCGCCGTGGAGCAGCTCAAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCT 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 46 GAGTATGAGGCCGCCGTGGAGCAGCTCAAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCT 119
Query 219 GAGCGAGGAGACCCGGCAGCACCAGGCCAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACC 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAGCGAGGAGACCCGGCAGCACCAGGCCAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACC 193
Query 293 AACTGAAGCAGCAGCAACTTCTCAATGAGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCC 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 AACTGAAGCAGCAGCAACTTCTCAATGAGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCC 267
Query 367 ATGCGGCGAGCCACCGTGGAGCGGGAGATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGACCGAGGC 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 268 ATGCGGCGAGCCACCGTGGAGCGGGAGATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGGCCGAGGC 341
Query 441 CCGGGCGCGCGCCAAGGCCGAGCGGGAGAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGTCCGAGC 514
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 342 CCGGGCGCGCGCCAAGGCCGAGCGGGAGAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGGCCGAGC 415
Query 515 ACCGTCAGACCGTCTTGGAGTCCATCAGGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACA 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 ACCGTCAGACCGTCTTGGAGTCCATCAGGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACA 489
Query 589 GACCGGGACAAAGTGACAGCCACGGTGGCTGGGCTGACGCTGCTGGCTGTCGGGGTCTACTCAGCCAAGAATGC 662
|||.||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 490 GACTGGGACAAAGTGACAGCCACGGTGGCTGGGCTGACGCTGCTGGCTGTTGGGGTCTACTCAGCCAAGAATGC 563
Query 663 GACAGC-CGTCACTGGCCGCTTCATCGAGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATC 735
.|| || .|||.|.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 CAC-GCTTGTCGCCGGCCGCTTCATCGAGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATC 636
Query 736 ACGGTGCTGGAGGCGCTGCGGCACCCCATCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGTGCTGGA 809
||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 637 ACGGTGCTTGAGGCGCTGCGGCACCCCATCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGCGCTGGA 710
Query 810 GGGTGTTGTGCTTAGTCCCAGCCTGGAAGCACGGGTGCGCGACATCGCCATAGCAACCAGGAACACCAAGAAGA 883
||||||||||||.||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 711 GGGTGTTGTGCTCAGTCCCAGCCTGGAAGCACGGGTGCGCGACATCGCCATAGCAACAAGGAACACCAAGAAGA 784
Query 884 ACCGGGGCCTGTACAGGCACATCCTGCTGTATGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTC 957
||||..|||||||||||.||||||||.||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 ACCGCAGCCTGTACAGGAACATCCTGATGTACGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTC 858
Query 958 GCCCTGCACTCAGGCATGGACTACGCCATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGAC 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 GCCCTGCACTCAGGCATGGACTACGCCATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGAC 932
Query 1032 CGCCATGCACAAGCTCTTTGACTGGGCCAATACCAGCCGGCGCGGCCTCCTGCTCTTCATGGATGAAGCAGACG 1105
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||..||||||||||.||||
Sbjct 933 CGCCATGCACAAGCTCTTTGACTGGGCCAATACCAGCCGGCGCGGCCTCCTGCTCTTTGTGGATGAAGCGGACG 1006
Query 1106 CCTTCCTTCGGAAGCGAGCCACTGAGGAGATAAGCAAGGACCTCAGAGCCACACTGAACGCCTTCCTGTACCAC 1179
||||||||||||||||||||||.|||.||||||||.||||||||||.|||||||||||||||||||||||||.|
Sbjct 1007 CCTTCCTTCGGAAGCGAGCCACCGAGAAGATAAGCGAGGACCTCAGGGCCACACTGAACGCCTTCCTGTACCGC 1080
Query 1180 ATGGGCCAACACAGCAACAAATTCATGCTGGTCCTGGCCAGCAATCTGCCTGAGCAGTTCGACTGTGCCATCAA 1253
|.||||||.|||||||||||.|||||||||||||||||||||||.|..||.||||||||||||||.||||||||
Sbjct 1081 ACGGGCCAGCACAGCAACAAGTTCATGCTGGTCCTGGCCAGCAACCAACCAGAGCAGTTCGACTGGGCCATCAA 1154
Query 1254 CAGCCGCATTGACGTGATGGTCCACTTCGACCTGCCGCAGCAGGAGGAGCGGGAGCGCCTGGTGAGACTGCATT 1327
...||||||..|.|.|||||||||||||||||||||...|||||||||.||||||||||||||||||.||.|||
Sbjct 1155 TGACCGCATCAATGAGATGGTCCACTTCGACCTGCCAGGGCAGGAGGAACGGGAGCGCCTGGTGAGAATGTATT 1228
Query 1328 TTGACAACTGTGTTCTTAAGCCGGCCACAGAAGGAAAACGGCGCCTGAAGCTGGCCCAGTTTGACTACGGGAGG 1401
|||||||.|.|||||||||||||||||||||||||||.|.||||||||||||||||||||||||||||||||||
Sbjct 1229 TTGACAAGTATGTTCTTAAGCCGGCCACAGAAGGAAAGCAGCGCCTGAAGCTGGCCCAGTTTGACTACGGGAGG 1302
Query 1402 AAGTGCTCGGAGGTCGCTCGGCTGACGGAGGGCATGTCGGGCCGGGAGATCGCTCAGCTGGCCGTGTCCTGGCA 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 AAGTGCTCGGAGGTCGCTCGGCTGACGGAGGGCATGTCGGGCCGGGAGATCGCTCAGCTGGCCGTGTCCTGGCA 1376
Query 1476 GGCCACGGCATATGCCTCCAAGGACGGGGTCCTCACTGAGGCCATGATGGACGCCTGTGTGCAAGATGCTGTCC 1549
|||||||||.|||||||||.|||||||||||||.||.|||||||||||||||.||.|.||||||||||||||||
Sbjct 1377 GGCCACGGCGTATGCCTCCGAGGACGGGGTCCTGACCGAGGCCATGATGGACACCCGCGTGCAAGATGCTGTCC 1450
Query 1550 AGCAGTACCGACAGAAGATGCGCTGGCTGAAGGCGGAGGGGCCTGGGCGCGGGGTCGAGCACCCCCTATCCGGA 1623
|||||.|||..|||||||||.||||||||||||||||.|||||||||||.||||.|||||.|.|||.||||
Sbjct 1451 AGCAGCACCAGCAGAAGATGTGCTGGCTGAAGGCGGAAGGGCCTGGGCGTGGGGACGAGCCCTCCCCATCC--- 1521
Query 1624 GTCCAAGGCGAGACCCTCACCTCATGGAGCCTGGCCACGGACCCCTCCTACCCCTGCCTTGCCGGCCCCTGCAC 1697
Sbjct 1522 -------------------------------------------------------------------------- 1521
Query 1698 ATTTAGGATATGCTCCTGGATGGGGACTGGGCTGTGCCCAGGGCCTCTGTCCCCCAGGATGTCTTGTGGTGGCG 1771
Sbjct 1522 -------------------------------------------------------------------------- 1521
Query 1772 GTCGGCCGTTCTGCCCCCCAGGGCACCCCCTGTTG 1806
Sbjct 1522 ----------------------------------- 1521
