Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12758
- Subject:
- XR_001737282.1
- Aligned Length:
- 2511
- Identities:
- 1646
- Gaps:
- 769
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGTGTGTGGCGCCTGCGCAGTGGCGGTGACCACCGGCTCGCGGCGCGTGGAGGCTGCTCCCAGCCGCGCGCGA 74
Query 1 --------------------------------------------ATGC-AGC------TGG------------A 11
.||| ||| ||| |
Sbjct 75 GTCAGACTCGGGTGGGGGTCCCGGCGGCGGTAGCGGCGGCGGCGGTGCGAGCATGTCGTGGCTCTTCGGCATTA 148
Query 12 A-----GCCC------TGAA---------CC-----------TGCTGCACACACTAGTCTGGG----------- 43
| |||| |||| || |||.||.|.|.| ||.|.|||
Sbjct 149 ACAAGGGCCCCAAGGGTGAAGGCGCGGGGCCGCCGCCGCCTTTGCCGCCCGCGC-AGCCCGGGGCCGAGGGCGG 221
Query 44 -------CACGGAGTCTCTG-----CCGTGCCGGAGC------------TGTGCA-----GAC--------ACA 80
|.||| || || ||| |||||.|| .|.||| ||| .|.
Sbjct 222 CGGGGACCGCGG-GT---TGGGAGACCG-GCCGGCGCCCAAGGACAAATGGAGCAACTTCGACCCCACCGGCCT 290
Query 81 GGAGCG-GCTGTC-AGGCAG-------------------------TGCCA-----GCCCTGA------------ 110
|||||| ||.|.| ||||.| ||||| |||||||
Sbjct 291 GGAGCGCGCCGCCAAGGCGGCGCGCGAGCTGGAGCACTCGCGTTATGCCAAGGACGCCCTGAATCTGGCACAGA 364
Query 111 -GCAAGTGC--------CAGCTGGTG----AGTGCTGTGCTCTGCAGGAGTATGAGGCCGCCGTGGAGCAGCTC 171
|||.|.|| |||.|||.| ||| |...|||| .|.|||||||||||||||||||||||||||
Sbjct 365 TGCAGGAGCAGACGCTGCAGTTGGAGCAACAGT-CCAAGCTC--AAAGAGTATGAGGCCGCCGTGGAGCAGCTC 435
Query 172 AAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGAGACCCGGCAGCACCAGGC 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 AAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGAGACCCGGCAGCACCAGGC 509
Query 246 CAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGCAGCAGCAACTTCTCAATG 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 CAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGCAGCAGCAACTTCTCAATG 583
Query 320 AGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGAGCCACCGTGGAGCGGGAG 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 AGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGAGCCACCGTGGAGCGGGAG 657
Query 394 ATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGACCGAGGCCCGGGCGCGCGCCAAGGCCGAGCGGGA 467
|||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct 658 ATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGGCCGAGGCCCGGGCGCGCGCCAAGGCCGAGCGGGA 731
Query 468 GAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGTCCGAGCACCGTCAGACCGTCTTGGAGTCCATCA 541
||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 732 GAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGGCCGAGCACCGTCAGACCGTCTTGGAGTCCATCA 805
Query 542 GGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACCGGGACAAAGTGACAGCCACGGTG 615
||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 806 GGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACTGGGACAAAGTGACAGCCACGGTG 879
Query 616 GCTGGGCTGACGCTGCTGGCTGTCGGGGTCTACTCAGCCAAGAATGCGACAGC-CGTCACTGGCCGCTTCATCG 688
|||||||||||||||||||||||.|||||||||||||||||||||||.|| || .|||.|.|||||||||||||
Sbjct 880 GCTGGGCTGACGCTGCTGGCTGTTGGGGTCTACTCAGCCAAGAATGCCAC-GCTTGTCGCCGGCCGCTTCATCG 952
Query 689 AGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTGGAGGCGCTGCGGCACCCC 762
|||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 953 AGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTTGAGGCGCTGCGGCACCCC 1026
Query 763 ATCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGTGCTGGAGGGTGTTGTGCTTAGTCCCAGCCTGGA 836
||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||.||||||||||||||
Sbjct 1027 ATCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGCGCTGGAGGGTGTTGTGCTCAGTCCCAGCCTGGA 1100
Query 837 AGCACGGGTGCGCGACATCGCCATAGCAACCAGGAACACCAAGAAGAACCGGGGCCTGTACAGGCACATCCTGC 910
||||||||||||||||||||||||||||||.||||||||||||||||||||..|||||||||||.||||||||.
Sbjct 1101 AGCACGGGTGCGCGACATCGCCATAGCAACAAGGAACACCAAGAAGAACCGCAGCCTGTACAGGAACATCCTGA 1174
Query 911 TGTATGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCACTCAGGCATGGACTACGCC 984
||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 TGTACGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCACTCAGGCATGGACTACGCC 1248
Query 985 ATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCACAAGCTCTTTGACTGGGC 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 ATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCACAAGCTCTTTGACTGGGC 1322
Query 1059 CAATACCAGCCGGCGCGGCCTCCTGCTCTTCATGGATGAAGCAGACGCCTTCCTTCGGAAGCGAGCCACTGAGG 1132
||||||||||||||||||||||||||||||..||||||||||.||||||||||||||||||||||||||.|||.
Sbjct 1323 CAATACCAGCCGGCGCGGCCTCCTGCTCTTTGTGGATGAAGCGGACGCCTTCCTTCGGAAGCGAGCCACCGAGA 1396
Query 1133 AGATAAGCAAGGACCTCAGAGCCACACTGAACGCCTTCCTGTACCACATGGGCCAACACAGCAACAAATTCATG 1206
||||||||.||||||||||.|||||||||||||||||||||||||.||.||||||.|||||||||||.||||||
Sbjct 1397 AGATAAGCGAGGACCTCAGGGCCACACTGAACGCCTTCCTGTACCGCACGGGCCAGCACAGCAACAAGTTCATG 1470
Query 1207 CTGGTCCTGGCCAGCAATCTGCCTGAGCAGTTCGACTGTGCCATCAACAGCCGCATTGACGTGATGGTCCACTT 1280
|||||||||||||||||.|..||.||||||||||||||.||||||||...||||||..|.|.||||||||||||
Sbjct 1471 CTGGTCCTGGCCAGCAACCAACCAGAGCAGTTCGACTGGGCCATCAATGACCGCATCAATGAGATGGTCCACTT 1544
Query 1281 CGACCTGCCGCAGCAGGAGGAGCGGGAGCGCCTGGTGAGACTGCATTTTGACAACTGTGTTCTTAAGCCGGCCA 1354
|||||||||...|||||||||.|||||||||||
Sbjct 1545 CGACCTGCCAGGGCAGGAGGAACGGGAGCGCCT----------------------------------------- 1577
Query 1355 CAGAAGGAAAACGGCGCCTGAAGCTGGCCCAGTTTGACTACGGGAGGAAGTGCTCGGAGGTCGCTCGGCTGACG 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 ------------GGCGCCTGAAGCTGGCCCAGTTTGACTACGGGAGGAAGTGCTCGGAGGTCGCTCGGCTGACG 1639
Query 1429 GAGGGCATGTCGGGCCGGGAGATCGCTCAGCTGGCCGTGTCCTGGCAGGCCACGGCATATGCCTCCAAGGACGG 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||.|||||||
Sbjct 1640 GAGGGCATGTCGGGCCGGGAGATCGCTCAGCTGGCCGTGTCCTGGCAGGCCACGGCGTATGCCTCCGAGGACGG 1713
Query 1503 GGTCCTCACTGAGGCCATGATGGACGCCTGTGTGCAAGATGCTGTCCAGCAGTACCGACAGAAGATGCGCTGGC 1576
||||||.||.|||||||||||||||.||.|.|||||||||||||||||||||.|||..|||||||||.||||||
Sbjct 1714 GGTCCTGACCGAGGCCATGATGGACACCCGCGTGCAAGATGCTGTCCAGCAGCACCAGCAGAAGATGTGCTGGC 1787
Query 1577 TGAAGGCGGAGGGGCCTGGGCGCGGGGTCGAGCACCCCCTATCCGGAGTCCA-AGGCGAGACCCTCACCTCATG 1649
||||||||||.|||||||||||.||||.|||||.|.|||.||||.||||||| ||| ||||.||.||.||||.|
Sbjct 1788 TGAAGGCGGAAGGGCCTGGGCGTGGGGACGAGCCCTCCCCATCCTGAGTCCACAGG-GAGATCCACAGCTCACG 1860
Query 1650 GAGCCTGGCCACGGACCCCTCCTACCCCTGCCTTGCCGGCCCCTGCACATTTAGGATATGCTCCTGGATGGGGA 1723
||||||||||.|||||||||||.||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 1861 GAGCCTGGCCGCGGACCCCTCCCACCCCTGCCTTGCCGGCCCCTGCACATTTAGGATATGCTCCTGGGTGGGGA 1934
Query 1724 CTGGGCTGTGCCCAGGGCCTCTGTCCCCCAGGATGTCTTGTGGTGGCGGTCGGCCGTTCTGCCCCCCAGGGCAC 1797
|||||||||||||||||||||||||||||||||||||||||||||..|||||||||||||||||||||||||||
Sbjct 1935 CTGGGCTGTGCCCAGGGCCTCTGTCCCCCAGGATGTCTTGTGGTGCGGGTCGGCCGTTCTGCCCCCCAGGGCAC 2008
Query 1798 CCCCTGTTG----------------------------------------------------------------- 1806
|||||||||
Sbjct 2009 CCCCTGTTGTAGGCACTGGCTAGGGAGGGGCAGGCCTCCTTCCTGCCCCTCGAGACACTCTTGGGAGATGCATT 2082
Query 1807 -------------------------------------------------------------------------- 1806
Sbjct 2083 TTCCGTCTGGCTCACAGGGGGAGGGTGAGGCTTTGCACCCCAGCCCCTGCCCAGGCCACTGTGAGGGTGGGTGC 2156
Query 1807 -------------------------------------------------------------------------- 1806
Sbjct 2157 TGGCTGAGCCCCCGGGGCAGCAGGAGCCAGGCAGGTGATGTCTTTGTTCTCGGCTCCCACAGCAGAGCCAGGTG 2230
Query 1807 -------------------------------------------------------------------------- 1806
Sbjct 2231 AGGGGGCGCCTGCCAGGGCCAGACCCAGGTGGGGCAGCCTGAACCCTGCTTCCCCCTGTGGCCGGCATGCCCCG 2304
Query 1807 -------------------------------------------------------------------------- 1806
Sbjct 2305 ATCTTTCACACACTGGTGACCCTGAGAGAGGAGGGAGGAGGGAACCTGGCGGGGGTGTCTGAGGCCGCACTGTC 2378
Query 1807 --------------------------------------------------------------------- 1806
Sbjct 2379 AGCTGGCCGGTCCAAGCCTGTGGCTGGAGCTGGGGTCTGTTTACCTAATAAAGTCCCACAGGTGCCTCA 2447
