Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12758
Subject:
XR_001737468.1
Aligned Length:
3088
Identities:
1745
Gaps:
1319

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACGCATTTCCGTCGCCGGGAGGAAGGGGTGTGTGTTTCGCCTGCGCAGTGGTCCTGGCCACCGGCTCGCGGCGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGGAGGCTGCTCCCAGCCGCGCCCGAGTCAGACTCGGGTGGGGGTCCCGGCGGCGGTAGCGGCGGCGGCGGTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGAGCATGTCGTGGCTCTTCGGCGTTAACAAGGGCCCCAAGGGTGAAGGCGCGGGGCCGCCGCCGCCTTTGCCG  222

Query    1  --------------------------------------------------------------------ATGCAG  6
                                                                                |||.||
Sbjct  223  CCCGCGCAGCCCGGGGCCGAGGGCGGCGGGGACCGCGGTTTGGGAGACCGGCCGGCGCCCAAGGACAAATGGAG  296

Query    7  C----TGGA-------AGCCCTGAACCTGCTGCACACACTAGTCTGGGCAC-----GGAGTCTCTGCCGT---G  61
            |    |.||       .|||..||.|..||.||     |.||.|.|.||.|     |||| |.||..|||   |
Sbjct  297  CAACTTCGACCCCACCGGCCTGGAGCGCGCCGC-----CAAGGCGGCGCGCGAGCTGGAG-CACTCGCGTTACG  364

Query   62  CC--GGAG---CT-------GTGCAGACACAGGAGC---GGCTGTCAGGCAGTGCCAGCCCT-GAGCA--AGTG  117
            ||  ||||   ||       |.|||||..|||||||   .|||     |||||        | |||||  |||.
Sbjct  365  CCAAGGAGGCCCTGAATCTGGCGCAGATGCAGGAGCAGACGCT-----GCAGT--------TGGAGCAACAGTC  425

Query  118  CCAGCTGGTGAGTGCTGTGCTCTGC-AGGAGTATGAGGCCGCCGTGGAGCAGCTCAAGAGCGAGCAGATCCGGG  190
            |.||||                  | |.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  426  CAAGCT------------------CAAAGAGTATGAGGCCGCCGTGGAGCAGCTCAAGAGCGAGCAGATCCGGG  481

Query  191  CGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGAGACCCGGCAGCACCAGGCCAGGGCCCAGTATCAAGAC  264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  482  CGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGAGACCCGGCAGCACCAGGCCAGGGCCCAGTATCAAGAC  555

Query  265  AAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGCAGCAGCAACTTCTCAATGAGGAGAATTTACGGAAGCA  338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  556  AAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGCAGCAGCAACTTCTCAATGAGGAGAATTTACGGAAGCA  629

Query  339  GGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGAGCCACCGTGGAGCGGGAGATGGAGCTGCGGCACAAGA  412
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  630  GGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGAGCCACCGTGGAGCGGGAGATGGAGCTGCGGCACAAGA  703

Query  413  ATGAGATGCTGCGAGTGGAGACCGAGGCCCGGGCGCGCGCCAAGGCCGAGCGGGAGAATGCAGACATCATCCGC  486
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  704  ATGAGATGCTGCGAGTGGAGACCGAGGCCCGGGCGCGCGCCAAGGCCGAGCGGGAGAATGCAGACATCATCCGC  777

Query  487  GAGCAGATCCGCCTGAAGGCGTCCGAGCACCGTCAGACCGTCTTGGAGTCCATCAGGACGGCTGGCACCTTGTT  560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  778  GAGCAGATCCGCCTGAAGGCGTCCGAGCACCGTCAGACCGTCTTGGAGTCCATCAGGACGGCTGGCACCTTGTT  851

Query  561  TGGGGAAGGATTCCGTGCCTTTGTGACAGACCGGGACAAAGTGACAGCCACGGTGGCTGGGCTGACGCTGCTGG  634
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  852  TGGGGAAGGATTCCGTGCCTTTGTGACAGACCGGGACAAAGTGACAGCCACGGTGGCTGGGCTGACGCTGCTGG  925

Query  635  CTGTCGGGGTCTACTCAGCCAAGAATGCGACAGCCGTCACTGGCCGCTTCATCGAGGCTCGGCTGGGGAAGCCG  708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  926  CTGTCGGGGTCTACTCAGCCAAGAATGCGACAGCCGTCACTGGCCGCTTCATCGAGGCTCGGCTGGGGAAGCCG  999

Query  709  TCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTGGAGGCGCTGCGGCACCCCATCCAGGTCAGCCGGCGGCT  782
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000  TCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTGGAGGCGCTGCGGCACCCCATCCAGGTCAGCCGGCGGCT  1073

Query  783  CCTCAGTCGACCCCAGGACGTGCTGGAGGGTGTTGTGCTTAGTCCCAGCCTGGAAGCACGGGTGCGCGACATCG  856
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074  CCTCAGTCGACCCCAGGACGTGCTGGAGGGTGTTGTGCTTAGTCCCAGCCTGGAAGCACGGGTGCGCGACATCG  1147

Query  857  CCATAGCAACCAGGAACACCAAGAAGAACCGGGGCCTGTACAGGCACATCCTGCTGTATGGGCCACCAGGCACC  930
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148  CCATAGCAACCAGGAACACCAAGAAGAACCGGGGCCTGTACAGGCACATCCTGCTGTATGGGCCACCAGGCACC  1221

Query  931  GGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCACTCAGGCATGGACTACGCCATCATGACAGGCGGGGACGT  1004
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222  GGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCACTCAGGCATGGACTACGCCATCATGACAGGCGGGGACGT  1295

Query 1005  GGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCACAAGCTCTTTGACTGGGCCAATACCAGCCGGCGCGGCC  1078
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296  GGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCACAAGCTCTTTGACTGGGCCAATACCAGCCGGCGCGGCC  1369

Query 1079  TCCTGCTCTTCATGGATGAAGCAGACGCCTTCCTTCGGAAGCGAGCCACTGAGGAGATAAGCAAGGACCTCAGA  1152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370  TCCTGCTCTTCATGGATGAAGCAGACGCCTTCCTTCGGAAGCGAGCCACTGAGGAGATAAGCAAGGACCTCAGA  1443

Query 1153  GCCACACTGAACGCCTTCCTGTACCACATGGGCCAACACAGCAACAA---------------------------  1199
            |||||||||||||||||||||||||||||||||||||||||||||||                           
Sbjct 1444  GCCACACTGAACGCCTTCCTGTACCACATGGGCCAACACAGCAACAACCCCAGTCACGTGTCACACGGAGGATC  1517

Query 1200  --------------------------------------------------------------------------  1199
                                                                                      
Sbjct 1518  AAGTCCTGCTGGTCGGCCGTGGCTGACTCTTCAGGCACGTTGGGCTCCTGGGTCAGCTGCTGCCGTTCGACGCT  1591

Query 1200  --------------------------------------------------------------------------  1199
                                                                                      
Sbjct 1592  CCCTGGAGCCCTGACTCAGGTCCTTCCCAGAGAGGCAAGGCTGGGGCCCTGCTGAGCCTCTGCTGAACCCGGGC  1665

Query 1200  --------------------------------------------------------------------------  1199
                                                                                      
Sbjct 1666  CCCCGAGGTCCTGCTTCTGGCTCGCATGGCCATAATCTTGACAGGGACTCTGGGTCCCGCATCCCTGCTCCCAG  1739

Query 1200  --------------------------------------------------------------------------  1199
                                                                                      
Sbjct 1740  CACAGCGGGGCTCAGGTAGCAGGAGGGAGTGGTGTTCCCGGCACTGCCTATCAGGCTGGGCGAGGGTCAGCGGG  1813

Query 1200  --------------------------------------------------------------------------  1199
                                                                                      
Sbjct 1814  GAAGTACCACACAGGGCAAGAACAGAGGCCCGAGAAGCCGGGCGGGGGGCAGCTGGGCGTGGTGGGGCAGGCAG  1887

Query 1200  --------------------------------------------------------------------------  1199
                                                                                      
Sbjct 1888  GCGGGTGACCAGGGCTGTGGCTGCGTTCTCCCCATGTTTCCTGTGCTCACAAGCTGCCGCTTTAGATTCTCCCA  1961

Query 1200  --------------------------------------------------------------------------  1199
                                                                                      
Sbjct 1962  AAAAGTCTCCCCGAGGGGGCTGAGGAGCCCCCGTTGCCCTCGGGGCATCTCAGCTGGCAGCCCCAGCGTTTCCT  2035

Query 1200  --------------------ATTCATGCTGGTCCTGGCCAGCAATCTGCCTGAGCAGTTCGACTGTGCCATCAA  1253
                                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036  TCCCCATCCCTGTCCTACAGATTCATGCTGGTCCTGGCCAGCAATCTGCCTGAGCAGTTCGACTGTGCCATCAA  2109

Query 1254  CAGCCGCATTGACGTGATGGTCCACTTCGACCTGCCGCAGCAGGAGGAGCGGGAGCGCCTGGTGAGACTGCATT  1327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2110  CAGCCGCATTGACGTGATGGTCCACTTCGACCTGCCGCAGCAGGAGGAGCGGGAGCGCCTGGTGAGACTGCATT  2183

Query 1328  TTGACAACTGTGTTCTTAAGCCGGCCACAGAAGGAAAACGGCGCCTGAAGCTGGCCCAGTTTGACTACGGGAGG  1401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2184  TTGACAACTGTGTTCTTAAGCCGGCCACAGAAGGAAAACGGCGCCTGAAGCTGGCCCAGTTTGACTACGGGAGG  2257

Query 1402  AAGTGCTCGGAGGTCGCTCGGCTGACGGAGGGCATGTCGGGCCGGGAGATCGCTCAGCTGGCCGTGTCCTGGCA  1475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2258  AAGTGCTCGGAGGTCGCTCGGCTGACGGAGGGCATGTCGGGCCGGGAGATCGCTCAGCTGGCCGTGTCCTGGCA  2331

Query 1476  GGCCACGGCATATGCCTCCAAGGACGGGGTCCTCACTGAGGCCATGATGGACGCCTGTGTGCAAGATGCTGTCC  1549
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2332  GGCCACGGCATATGCCTCCAAGGACGGGGTCCTCACTGAGGCCATGATGGACGCCTGTGTGCAAGATGCTGTCC  2405

Query 1550  AGCAGTACCGACAGAAGATGCGCTGGCTGAAGGCGGAGGGGCCTGGGCGCGGGGTCGAGCACCCCCTATCCGGA  1623
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2406  AGCAGTACCGACAGAAGATGCGCTGGCTGAAGGCGGAGGGGCCTGGGCGCGGGGTCGAGCACCCCCTATCCGGA  2479

Query 1624  GTCCAAGGCGAGACCCTCACCTCATGGAGCCTGGCCACGGACCCCTCCTACCCCTGCCTTGCCGGCCCCTGCAC  1697
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2480  GTCCAAGGCGAGACCCTCACCTCATGGAGCCTGGCCACGGACCCCTCCTACCCCTGCCTTGCCGGCCCCTGCAC  2553

Query 1698  ATTTAGGATATGCTCCTGGATGGGGACTGGGCTGTGCCCAGGGCCTCTGTCCCCCAGGATGTCTTGTGGTGGCG  1771
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2554  ATTTAGGATATGCTCCTGGATGGGGACTGGGCTGTGCCCAGGGCCTCTGTCCCCCAGGATGTCTTGTGGTGGCG  2627

Query 1772  GTCGGCCGTTCTGCCCCCCAGGGCACCCCCTGTTG---------------------------------------  1806
            |||||||||||||||||||||||||||||||||||                                       
Sbjct 2628  GTCGGCCGTTCTGCCCCCCAGGGCACCCCCTGTTGTAGGCACTGGCTAGGGAGGGGCAGGCCTCCTTCCTGCCC  2701

Query 1807  --------------------------------------------------------------------------  1806
                                                                                      
Sbjct 2702  CTCGAGACACTCTTGGGAGATGCATTTTCCGTCTGGCTCACAGGGGGAGGGTGAGGCTTTGTACCCCAGCCCCT  2775

Query 1807  --------------------------------------------------------------------------  1806
                                                                                      
Sbjct 2776  GCCCAGGCCACTGTGAGGGTGGGTGCTGGCTGAGCCCCTGGGGCAGAAGGAGTGGGGCAGGCGGGGTCTTTGTT  2849

Query 1807  --------------------------------------------------------------------------  1806
                                                                                      
Sbjct 2850  CTCGGCTCCCACAGCAGAGCCAGGTGAGGGGGGGCCTGCCAGGACTAGACAGAAGTGGGGCGGCCTGAACCCTG  2923

Query 1807  --------------------------------------------------------------------------  1806
                                                                                      
Sbjct 2924  CTTCCAGCCATGGCCAGGGGCCACGGAACCCGGCAGGGGTGTCTGAGGCCGCCCTGTCAGCTGGCCGGTCCAAG  2997

Query 1807  ------------------------------------------------------  1806
                                                                  
Sbjct 2998  CCTGTGGCTGGAGCTGGTGTGTGTTTATCTAATAAAGTCCCACAGGTGCCTCAC  3051

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