Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12783
- Subject:
- XR_002957902.1
- Aligned Length:
- 7208
- Identities:
- 190
- Gaps:
- 6994
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CACACACACAGGAGAACATACATGAAATCTCATCAACCATGAAGATCTCAGGCCTGAATCCTGAGGGTTCTCTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TAAGTCACCACCTACCTGGGATTTCTGCTAACCCCTGAGCTAATCACTGAAGTCTGGCTTTAGCTGATCATTTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAAAGTTAATGCAAAGAATGGTATTCATGCTTACAGAGGAATGCTTTTGAGGACAGAACAATCCAGAGAGGGAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTTACCAGACTTTTCTTAAGTGAGGGGAGAATTCTGGAACAGCCGAACAACAATTTGCATAGGACAAGCACCAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GATGTATACGTGGAAATGTCACCCTCCTTGGGGAGTCCCAGAAATTACTTGCTGGGGGATCCAATAAAAAAGGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TAAATTTGTTCTTCCATTATAGACAGATGGGGTTCTGAGTCATTAGGGTTGGAACATAAAAATAAGCATAATTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TATTTTGTGTTTCCAGCCCTAATTGTAGCTATTCTGTTCTTTAAAAGCCATTTCATTTGAGAATGGCAGAAGGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATTTAACTGGAAGCCTTTAAAGCAAGAAATCACTTTTAAAGTGATATAGAAATAACTTCAGGCTTTTGTTTTAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGTAAAACATATGAACGTGCATGCATTTATTGATCTTTGATGTGAGTCTAAGGCCTTTTCTTTGAATGATTTCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CTGTTGATAAAAATCCCTCATTAACCTTCCCACATACACCTCACTAACATTTCAGTCACCAGCAGGGGTTGGCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AACTATGGCCCACTGCCTGTTCTTGTAAATAAAGTTTTATTGAGACATAGCCTCAATCATTCATTTTATCTATG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCTGCTTTTGTGCTATTATGGCAGTGTCGAGTGGGGGCAATGGAGACCCTATGGCCTTCAGGTCCTAAAATAGT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CACAATCTGGCTTTTTTCAGAAAAAGTTTAAAGTTTGTTAACTCTATGGTATCAATTCTGGGTTTGATTAAAGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGAATGAGAATGTCAAGACACATTGAAAAGAATCTGACTGCAGAATCTTTCCACATTTCTGAGGGCTTTTTTCC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ACTAATATTTTACAGTCTTCTCACCCACAGCTAAGCAAAATAATTTTTGAATCGTGTTTTCATACAATGTTTCC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AAAGCATTTAGTTTTCATAGAAACAGCTCTTTTTCTTACTGCACTCATTTTTCATCAGTTTACATAATATTCCA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTAACTAATGTAATTACAATGAAAAGTGCAGCTGGCAGAAGCAGCCCTGGGAACAAATACAACTGACTCTTGGC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AAGCAGACACTGCAACGGGTGAAGAGAAAGGTAAATTTGTACCAAACAGTCACTACATAGGATGCTGTGCACAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CTGCCAATATGCTTTATAAAGAGATGGGACAGTATGTATTAATCTGGTACGTTTGATAAGTGAAGGTCAATCAG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GTAAGCTTCTTCTATTCATACCCTTTTACACAGCATCTCTTGTTTCTCATATTCATCAGTTTCACATTGAACAT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTTTTGCCAATGGTTGTCAATGATTATTTGACAAATGCATGTCTTTTCCACTAGGCTGTGAGGTATAAGAGAAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AAGAGTGGTGCAAGTTTTAGTATATTATTATACCTCTACTGCCTAGCACAGTGATTGGCATACGGTTTCTGCTC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AAAAAATATTTCTTGAATAAATAACTGAACAGAAGCAGGCATTTCTACAACGAACCATCCTAAAATTATAGTCA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GGAAGAACTCATGGATCCTGTGAGGTCTCACCAAGGGGTGGGGAGAAGGGGGGCTTACATTTTCTTCCGTGCTA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TCGTAAGAGCCACTAAGGAATGAAAAGCTGGGCTTTAAAAAGTGGAGAGGGGTGAGACACAGCGGGAGAAGGTA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TCTCTGATTCTGATAGCTCAATTGCAAGGCAGTTGGGAAGTTTCATTATCTGATGTCCAGATGAAGGCGATGGG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TTTAAGCCAAGAAGATCATTAGCAATTTTCATTATGCAATCCACATCACTCTCATATCTAGCAGAAATGAGAAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CTCGCTTGTAACTGGCAAATTAAATATTGATAATGCAGATCTGCTCTACAACCTCTTTCACAAGGCGGGTACCA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TGATTTCAGTATTTCTAAAAAACTCAGTCATTTGCATTCCAGTATCACAATCTTTGTCATAACTGCGGGCAATA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TGTAACATTATGAAGTTAATATTTATCTTTAAAGCAACCCATTTTTAACTTAAATAAGTGGAACAATAAATGGA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ACATAAAATACGATGTGTGCCAAGGAAACTTTGTATTGCCACGGTAAATGAAAAACCAATATCAACAGTCACAC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ATAAAAGTTAATGAAAAAAATCCATTAATATCCAACAATAATTAAGAACCTTTTTTATTCCAGACACTTTTCTA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ACAACCTCATATGCATTAATTAGTTTAATCTTTTTTTGCATGCAAAAATACAAACACGAAGACACATGCGCATG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CACACACACACACACACAAACTTATGAAATCTGTGCAATGATTATCTCCACTATACAGGTGAGGAATTTGACAT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AGAGAGGATTGAAGTAACATGTACAAGGCTACAAAGTGCTAAGTTGCAAAGTCTAGATTTTATCTCAGTAGGCG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TAGCTCCAGGCCCCTGATTCTTAATAGTGTATTTTGCAAACAATGTTTTCAAAGTGCAAAGAGATGCTCTGGGG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CTGGAGGCTCTCATCCTGAGGCACACTCCCTTTCCCTTAAAAAAGAAAGCTTAGAAAGTGTTACAGCCCTGCTA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AAGATACTTTAGTTTAAACTGAGCATTTCTGATTGGCATAAAAACCACAGAGAGACAATGGAAAGGGGAGTAAC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TTTCTAAGTGATTCCCCCTTTCTTAATGAGTTAGTGTTCGCCTGAAAGCTGTGAGTAAGACGTGCGGTAGGTGT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 CCTATATTTTGAGAAATACAGAGCTAGCAGTTGGTGGTAGCACATGTATTTTCCAGGATCCTTTGTTCAGCTGA 2960
Query 1 ----------------------------------------------------------------------ATGG 4
| .
Sbjct 2961 TATCCACATTTTGAAAGCATAGCAGAGATCTATATCTGGTGGTTTTCGTGTTTTTTTTTTTTTTTTCCCCA--C 3032
Query 5 AGTCTCATTCTGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGAGGTC 78
||||||..|||||||.|||||||||||||.||||||||||||||.|||||||||||||||..||||.||.||||
Sbjct 3033 AGTCTCCCTCTGTCGACCAGACTGGAGTGCAGTGGCATGATCTCTGCTCACTGCAACCTCCACCTCCCGGGGTC 3106
Query 79 AAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCTAATTTTTT 152
||||.|||||||||||||.|||||||||||||||||||.|||||||.|.|||.||||||||.|||||| |||
Sbjct 3107 AAGCAATTCTCCTGCCTCAGCCTCCGGAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCTGGCTAA---TTT 3177
Query 153 TTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG------- 219
||||||||||||.|||||.|||||||||||||||||||.|||||.|||||.|||||||||.||||.|
Sbjct 3178 TTGTATTTTTAGCAGAGACGGGGTTTCACCATGTTGGCTAGGCTAGTCTCCAACTCCTGATCTCAGGTGATCCA 3251
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3252 CCCACCTTGGCCTCCCAAAGTGCTGGGATGACAGGTGTGAGTCACTGCACCCGGCATCTATGGTGTTATTTACT 3325
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3326 CAGCTAGCAATGGCTCCTTTTCCCCAGTAATGAAGTCTTCCCTCAAGAGTTGGCCCTGGGCAACTGTGTTGCTT 3399
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3400 CATACCACTTCCCTGGACAGATCCAACTGGCCCAGAGTGAACAACTGATCCAGACTAAGCCAATCAGGCTCCTT 3473
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3474 TTCCAGGAATTTGTAACGAGGATGCACTGATGGTTAGTCCCTATACCGGTGGAAAGCGATGCAACATACATCTT 3547
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3548 AGGGGCTAGAAGGTGTGATGTGTGCATAAAGGTAGAGGGAGTCTTTATCAAAAGAAAAATCCAGAGTGGACCCA 3621
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3622 TAAACAGAAACAAAGACAGGAGATGAGCAAGACATACGTTGAGTTCAGGCAGCTTTCCCATTCTAAGCTCTGAT 3695
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3696 TCCTGGGAGGCCTGGTTGCATGCCTTTTCTGCTTAAGATAGCTGGAATCTGTCTCTATTGTTTGCATTCCAAAC 3769
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3770 AACCTTAACTGAGAGGGAGTTATCTCCTAAATACTTCACCATGAAATCAAATACAGAGCCTGCCCTTTATGTTG 3843
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3844 TCTTTCCTTGTGGGGAGTTTGGTGGCAGTAGATATGTGTTCTCTGTATTCTCATGCCTGGTATTTCTAGGAGGA 3917
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3918 AGAGAAGTGAAATAATTATTGGGAATAACACTGTATTAACAGTAGCTCACCTTGTTGAGTATCAGGCCTGCATT 3991
Query 220 -------------------------------------------------------------------------- 219
Sbjct 3992 TTTTTTTTTTTTCAGTGCTTTAACGAAGTTGTTTTATCCAGTCACCAATCCTATGAGAAAGCTATTCTTATTTT 4065
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4066 ACGTATAGGTAAAGTAAAGCTTTGAGACACTAAGGAGCATTTAGAAGTGGGATCTGAACCTAAGTCCATACCAG 4139
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4140 TGCTTCACCAGCCCTAACCACCCTTCCTAGTATGCTGACTATAGAGTCACATTGCCATATTGCAGATCAGTATT 4213
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4214 TGAATCCACAGAACAGAATCTGGCAGTCATGCATTTGGCTACCTAGTAGTTTTCTAACTAAGCTCGTTAATCAG 4287
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4288 CCCCCAAACCAACATCTACCACTCAAGCACAAAGATCCCTTTGTAATCAAATATTTTATGAGTGCTCAGAAAGG 4361
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4362 TGGGCTTTGGAATCTCCCACCCTATGAACATACAATCTCCCTCAACTGGTAGATAGTTCAGGGAAACAACAGGC 4435
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4436 CCCCAGGATCATTTTATTTCTCTCTTAGTTGTTTATTTGTCCATCTGTTGGTGCAGATGCTGGAGAGGTAAATG 4509
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4510 TTGATAATTGGATATGGTCACTGTACGACTATCACCATAACCTGTGCTGATGCTAGAACAAGCTGGTAAATACA 4583
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4584 GCCTATAGGATCAGGAGTGGTTAATGCACAGATTCCATAGTGAGCTCCTCTGACCATGTCCCCAGAAGAATCCA 4657
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4658 GCCAATAATGTGAATTGCAAGCTCAGAAGAACACTCAGTCTACTCTAGATTGACAAACCTTGGGACGGAGGAAT 4731
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4732 GAACAAGTTTCCCTGTTGTGTAGTGTGCGTAACAACCGAGCGATGTAAGTAATCCCAATAGTTCTCTGAGAAGA 4805
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4806 GTGACCCTACTGTTGGGAGTAACTGGCTGATGCCCTTCTTTGGGGAAGGGTAGGGGACAGGAAGCTCATGGACA 4879
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4880 GCATCTGTGGGCTGAGCTGGTTACTAATGCACGATGCCCCATGCCTGCTGCCCACACCTAATGCTGAGGGGATA 4953
Query 220 -------------------------------------------------------------------------- 219
Sbjct 4954 TGACCAAAGACTATATCCAGTGCAGTCCAAATTACACAAGGCAAAATACAAAGACAATGCCAAGATGGGTAGAA 5027
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5028 AAGTTAGGATATAGGTTAGGATGGAAGATGTGACCTGTGAGATTCAATGTTGGCAGAGAAATCATCTGTGTCAA 5101
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5102 ATTCCACAAACCAGAATTCACAAAGTTGCTGAGCCCACACATGTAGGATGAAAGAGAGTAATGAAAACTAATGA 5175
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5176 CAGGAAACCAGCACCCTGACAAACAGAGTGGACCCCTGTGAATTCCTTTTGTAGCAGACTCCATTGGGTAACAA 5249
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5250 CACTGGAGTGCATTTTCTGCTTCCTCCAGTTTAAGTAAATCCTACTTTTGTGCAGGTAACAATGTGCCTGATGC 5323
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5324 TGCAAATGAATCATAACTGCTGTAGCCAATCGCTGAGATTCCAGTTCACCTTGCCAGTGATTGATGTAGAGATT 5397
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5398 GGCCAATGACATCTAAGAAAACGACTGCAGTGACGAATTCTGGGAATTATTTTCCTGCAGTAAAATGCAAGACG 5471
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5472 TGTGAAGGAGAAACTCCTCTTCTCCTTCCTTCTGATGAGAGTGCTGCCCTGTGAGAACGTGATATGGGGTAGAT 5545
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5546 GGCAGACATCTTGGAAGAAGGAAAGAAAGGCCAACGGAAGCACAGGGATTGCAAACCACTGCCCTGATACCAAA 5619
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5620 AAGCCTCTGAATCAACCCTGGAACTGGGAGGATGAACCAGTAATTCAGACTACAGGAAAAAAGCAGTAAGACAG 5693
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5694 TTCAGAAAAGCTTAAAAATCTTGAAGTCTGTTCCATGAAGGAAAGGGTCACAACGAATGTCGGCACAGGTACTT 5767
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5768 GGAGGAAAGTGGGTAGAGAGGGCCATACTGAGATACTGCATAAAACAAATATGCATAAAAGAAACAGAAAACCT 5841
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5842 TGTCTCACTTTCTCGGTTTCATGCACCTGGATTCTGTTGTTTATTTTACCCAAGTACTTCACAAACCTGATGCC 5915
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5916 AACAGCAACTGTGAAATGGAAGCAACTCTACAAATTATTGCCATCATGAGACTATCATTAGGTCTACATAGCTC 5989
Query 220 -------------------------------------------------------------------------- 219
Sbjct 5990 AAGCTTCACTTGGAGTTCAATTGTGTGATTCAGAAGCACAGCTAGGATAAGTCAGAGACTGGAAAGGGGAAGAG 6063
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6064 GAGAGACGTGCAGGATATTTTTTTTTAACCAGTGAAACAACTCCCGACTTCCAGGACCAGACAATATACTTAAT 6137
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6138 GCACAAAACCAATATATTTTATGGCCTAAATGAAAAAAAGTAAAGTGGAAGGTCGGGCGCTGTTCCTTTAAGAT 6211
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6212 GCTTCCAGAATCAAATACCACTCTTGAAAGGGCTGCCAAACAATGTATCCAGGTAAAGAATGAAAAAAATATAT 6285
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6286 TCAGAGGAAAGGCAGGAGGATGTGTGGAAAGCTCAGTGAGATTATGGAAGTGCAGTAATTGAATATGACACAAG 6359
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6360 AGTCAAGTGCAAGAGGGAACTGGTGAGAGATTAACTTGAACTGGGGAAAGTAGGAGTCCAAAGAAACAGAAGAC 6433
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6434 ACACAATAAATGAATGGATAAATAGATGTTCATGTTTTCATGTCCACAATAATAGAATGTTGGAAAATCCAGTT 6507
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6508 TTCAGGACAATTATGAATCACTTAGAAGGAAAACACTGGACAAGTTTACCAGCATAGAACTCAATATATCAAAT 6581
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6582 CAATTGGTAGCTTTATTTCTCAGCGTTGCTGTTTTTGTAATCATTATAAACTCTTCTGAAACAAGATGGCATTT 6655
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6656 TCCTATAAACGCACGTCTCCAAGTACCTAGGGTGAGCCCTGGAGTTTGCGTTTTCCTTGATGCATTTCAGGACT 6729
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6730 ATGATACACATTTGACATATGTACTCAGGGTACTAACTGCCTAGCGCTGTGCTAATGAAAGGGGGTGTGTATCT 6803
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6804 AAATGACACATTGTACATTTTATTTAAAAAAGACAGGGGAGGAGTGATGAATAAAATAATGATGATGATACAGG 6877
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6878 GTCGTATGTGATAGAAAAGAAAAAACAGGGTTCCAGGGGTGCTCAAAGGAGATGCACCAACCCAGCCTGCTGAA 6951
Query 220 -------------------------------------------------------------------------- 219
Sbjct 6952 GGACGGGAAGCAGTGGAGGAGACATCAGTCAGTTGTTTCTGGAGCTGAGACCCTTGATCTAACCCTTACTGAGT 7025
Query 220 -------------------------------------------------------------------------- 219
Sbjct 7026 AAATAGGAGTTGGGCGGGAGGACCTCCCCAAGGATACAGAAACAAGATACCGTGAATGGCACAGTCAAAAGCAG 7099
Query 220 -------------------------------------------------------------------------- 219
Sbjct 7100 GATAAAGTCAGGGAGATTGTGGGGGGTGGAGGATGGAAGCGAAGGAACTTTGGGATTGCAAAATATTTAGGTTT 7173
Query 220 ------------------------------ 219
Sbjct 7174 TGCTCAATTTTAACTATGCTGCTAGGAAAG 7203
