Nucleotide Global Alignment

Description

• Query: ccsbBroad304_12824
• Subject: NM_172287.2
• Aligned Length: 2174
• Identities: 1462
• Gaps: 451

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCCCGGGCGGGCGGCGGCGGCGCAGCAGCTCCCGAACGCGCGGGGGGCGCGGCGCGGCCCGAGCCGTGGGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCTGTCCCTGGAGGAAGTGCTGAAGGTGTACGAGCAGCCCATCAACGAGGAGCAGGCCTGGGCGGTGTGCTTCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGGGCTGCCGCGGGCTGCGGGGCGAGCCGGGCGGCGTGCGGCGCATCCGGGACACGGCAGACATCCTCCTGCGT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGGGACGGTTCGGTTGGCGCGCGGCTGGAGCCCGAGCCTACAACCATGGTGGTACCACCAGCCAGCTCAGAAGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCAGATGGTGCAGTCACTGGGCTTTGCCATTTACCGTGCGCTGGACTGGGGGTTAGATGAGAACGAGGAGAGAG  370

Query    1  -----------------------------------ATGGCCAACAACGACAGCGAGGACAGCGGCTGCGGTGCC  39
                                               ||||||||||.||||.||||.||||||.|||||||.||.
Sbjct  371  AGCTCAGCCCGCAGCTGGAAAGGCTCATCGACCTCATGGCCAACAGCGACTGCGAAGACAGCAGCTGCGGGGCA  444

Query   40  GCCGATGAGGGCTACGGGGGTCCCGAGGAGGAGGAGGAGGCCGAGGGCGTCCCCCGCAGC-GTGCGCACCTTTG  112
            ||.|||||||||||||.||||||.||.||||||||||||||.|||||||.|||||| ||| |||||||||||||
Sbjct  445  GCGGATGAGGGCTACGTGGGTCCAGAAGAGGAGGAGGAGGCTGAGGGCGGCCCCCG-AGCTGTGCGCACCTTTG  517

Query  113  CCCAGGCCATGCGGCTGTGCGCGGCGCGGCTGACCGACCCCCGGGGCGCACAGGCGCATTACCAGGCCGTGTGC  186
            |||||||.|||||||||||.||...|||.|||||||||||||..|||||.|||||.||.||||||||.||||||
Sbjct  518  CCCAGGCTATGCGGCTGTGTGCTTTGCGCCTGACCGACCCCCACGGCGCGCAGGCCCACTACCAGGCAGTGTGC  591

Query  187  CGCGCGCTCTTCGTGGAGACGCTGGAGCTGCGGGCCTTCCTGGCCAGGGTCCGGGAGGCCAAGGAGATGCTGCA  260
            ||.||.|||||.||||||||.||||||||.||.||||||||||||.||||..||||||||||.|||||||||.|
Sbjct  592  CGAGCTCTCTTTGTGGAGACACTGGAGCTTCGTGCCTTCCTGGCCCGGGTGAGGGAGGCCAAAGAGATGCTGAA  665

Query  261  GAAGCTTCGGGAGGACGAGCCGCATCTGGAGACGCCTCGGGCAGAGCTGGACAGCCTGGGTCACACAGACTGGG  334
            |||.||..|||||||.|||||   .|.|||||.|||.|.|||.|||||.|||..||||||.|||||||||||||
Sbjct  666  GAAACTGGGGGAGGAGGAGCC---ACGGGAGAAGCCACTGGCCGAGCTCGACCACCTGGGACACACAGACTGGG  736

Query  335  CCCGACTGTGGGTTCAGCTCATGCGGGAGCTCCGCCGCGGAGTGAAGCTGAAGAAGGTGCAAGAGCAGGAGTTC  408
            ||||.||||||||.||||||||||||||||||||.|.|||.||.|||||||||||||||||.|||.||||||||
Sbjct  737  CCCGGCTGTGGGTCCAGCTCATGCGGGAGCTCCGTCACGGGGTAAAGCTGAAGAAGGTGCAGGAGAAGGAGTTC  810

Query  409  AACCCCCTCCCCACCGAGTTCCAGCTCACGCCCTTCGAGATGCTGATGCAGGACATCCGGGCCCGGAACTACAA  482
            |||||.||.||||||||||||||||||||.|||||||||||||||||||||||.|||||.|||.|||||||.||
Sbjct  811  AACCCACTGCCCACCGAGTTCCAGCTCACCCCCTTCGAGATGCTGATGCAGGATATCCGTGCCAGGAACTATAA  884

Query  483  GCTGCGCAA------GGTGGATGGGGACATCCCGCCCCGGGTGAAGAAGGACGCTCACGAGCTCATCCTGGACT  550
            |||||||||      |||.||||||||||||||.|||.||||||||||||||||.||.||.||.||||||||||
Sbjct  885  GCTGCGCAAGGTCATGGTCGATGGGGACATCCCTCCCAGGGTGAAGAAGGACGCACATGAACTTATCCTGGACT  958

Query  551  TTATCCGCTCACGGCCTCCACTGAAGCAGGTCTCTGAGAGGCGGCTGCGCCCGTTGCCACCAAAGCAAAGGTCC  624
            |.||.||.||.|||||||||||||||||||||||.|||||.|..||.|||||..|.||||..||||||||..|.
Sbjct  959  TCATTCGTTCTCGGCCTCCACTGAAGCAGGTCTCAGAGAGACAACTTCGCCCTGTACCACAGAAGCAAAGAACA  1032

Query  625  CTGCATGAGAAGATCCTGGAGGAGATCAAGCAGGAGCGGAGGCTGCGCCCGGTGCGGGG-CGAGGGCTGGGCTG  697
            |||||.|||||||||||||||||.||||||||||||||||||||.||.||.|| ||||| |.||..||.||..|
Sbjct 1033  CTGCACGAGAAGATCCTGGAGGAAATCAAGCAGGAGCGGAGGCTTCGTCCAGT-CGGGGCCCAGCACTTGGGAG  1105

Query  698  CCCGCGGGTTTGGCTCTCTGCCCTGCATCCTCAACGCCTGCTCCGGAGATGCCAAGTCCACCTCCTGCATCAAC  771
            .|||.||||||||.||.|||||||||||||||||.||||||||.||.||...|||||||||.||||||||||||
Sbjct 1106  GCCGTGGGTTTGGTTCCCTGCCCTGCATCCTCAATGCCTGCTCTGGGGACATCAAGTCCACTTCCTGCATCAAC  1179

Query  772  CTGTCAGTCACAGATGCTGGGGGCAGCGCCCAGCGCCCGCGGCCCCGCGTGCTGCTCAAGGCGCCTACCTTGGC  845
            |||||.|||||.|||.|||||.||.|....||||||||.||||||||.||.||||||||.||.||.|||.|.||
Sbjct 1180  CTGTCTGTCACCGATACTGGGAGCGGGAGTCAGCGCCCACGGCCCCGGGTCCTGCTCAAAGCCCCCACCCTTGC  1253

Query  846  TGAAATGGAAGAGATGAATACATCTGAGGAAGAAGAGTCTCCGTGTGGGGAGGTGACGCTGAAACGGGACCGCT  919
            .||.||||||||.|||||.||.|||||||||||||||||.||.||||||||||||.|.|||||.||||||||||
Sbjct 1254  AGAGATGGAAGAAATGAACACGTCTGAGGAAGAAGAGTCCCCATGTGGGGAGGTGGCACTGAAGCGGGACCGCT  1327

Query  920  CCTTCTCAGAGCATGACCTGGCCCAGCTCCGAAGTGAGGTGGCCTCTGGCCTGCAGTCGGCCACCCACCCCCCA  993
            |.||.||.||.||.||||||||||||||.||.||.|||.||||.||||||||.|||||.|||.|.||.||||||
Sbjct 1328  CTTTTTCGGAACACGACCTGGCCCAGCTTCGGAGCGAGATGGCATCTGGCCTTCAGTCAGCCGCTCAGCCCCCA  1401

Query  994  GGAGGGACGGAGCCACCACGGCCCCGAGCTGGCAGTGCGCATG----TGTGGAGGCCCGGCTCCCGAGACCAGG  1063
            |||||||||||||||||.|||.||.||||.||.|    |||||    ..|||||||||.||..|||||||||||
Sbjct 1402  GGAGGGACGGAGCCACCTCGGGCCAGAGCAGGTA----GCATGCACTCCTGGAGGCCCAGCAGCCGAGACCAGG  1471

Query 1064  GTACCTGTCCCGCGAG-----------TGTCTCTGACCCCAGCCACCCCCTACTCAGCAACCGGGGCTCCTCGG  1126
            ||..||||||.|.|||           .|.||||  |||||||....||.|.|.|||.|.|..|.|   |||.|
Sbjct 1472  GTTTCTGTCCTGTGAGCGGCCAGTCCCAGCCTCT--CCCCAGCTCTGCCTTGCCCAGTAGCTTGAG---CTCAG  1540

Query 1127  GGGACAGACCCGAGGC--CTCCATGACCCCCGATGCCAAACACCTGTGGCTGGAGTTCAGCCACCCCGTGGAGA  1198
            .|||..||||.|||||  ||.||     ||.|||.|||.|||||||||||||||||||||||||||.|||||||
Sbjct 1541  TGGATGGACCTGAGGCGGCTTCA-----CCAGATACCAGACACCTGTGGCTGGAGTTCAGCCACCCTGTGGAGA  1609

Query 1199  GCCTGGCGCTGACTGTGGAAGAGGTGATGGACGTGCGCCGTGTGCTGGTGAAGGCCGAGATGGAAAAGTTTTTG  1272
            |||||||.||||||||||||||||||.|||||||||||.|.||||||||||||||.||||||||.|.||||.||
Sbjct 1610  GCCTGGCTCTGACTGTGGAAGAGGTGGTGGACGTGCGCAGGGTGCTGGTGAAGGCGGAGATGGAGAGGTTTCTG  1683

Query 1273  CAGAACAAGGAGCTCTTCAGCAGTCTGAAGAAGGGGAAGATTTGCTGCTGCTGCCGGGCCAAGTTCCCGCTGTT  1346
            |||.|||||||||||||||||||.|||||||.|||||||||||||||.||||||||.||||||||.||.|||||
Sbjct 1684  CAGGACAAGGAGCTCTTCAGCAGCCTGAAGAGGGGGAAGATTTGCTGTTGCTGCCGAGCCAAGTTTCCCCTGTT  1757

Query 1347  CTCGTGGCCGCCCAGCTGTCTCTTCTGCAAGAGAGCCGTCTGCACTTCCTGTAGCATAAAGATGAAGATGCCTT  1420
            .||.|||||.||||.|||||||||||||||||||||.||.|||||||||||||||.||||||||||||||||||
Sbjct 1758  TTCCTGGCCACCCACCTGTCTCTTCTGCAAGAGAGCTGTGTGCACTTCCTGTAGCGTAAAGATGAAGATGCCTT  1831

Query 1421  CTAAGAAATTTGGACACATCCCTGTCTACACACTGGGCTTTGAGAGTCCTCAGAGGGTATCAGCTGCCAAAACC  1494
            |.|||||.|.||||||||||||||||||||||||.|||||||||||||.|||||||||..||.||.|||||.||
Sbjct 1832  CCAAGAAGTATGGACACATCCCTGTCTACACACTTGGCTTTGAGAGTCTTCAGAGGGTGCCAACTACCAAAGCC  1905

Query 1495  GCGCCAATCCAGAGAAGAGACATCTTTCAGTCTCTGCAAGGGCCACAGTGGCAGAGCGTGGAGGAGGCGTTCCC  1568
            .||||||..|.|||.|||||...|||.||.||.|||||.||.|||.||||||.||||||||||||||.||||||
Sbjct 1906  ACGCCAACACTGAGGAGAGATGCCTTCCAATCCCTGCAGGGACCAAAGTGGCGGAGCGTGGAGGAGGAGTTCCC  1979

Query 1569  CCACATCTACTCCCACGGCTGTGTCCTGAAGGATGTCTGCAGTGAGTGCACCAGCTTTGTGGCAGACGTGGTGC  1642
            |||||||||..||||||||||||||||.|||||||||||||||||.|||||||||||||||||.||.||.|||.
Sbjct 1980  CCACATCTATGCCCACGGCTGTGTCCTAAAGGATGTCTGCAGTGACTGCACCAGCTTTGTGGCTGATGTCGTGT  2053

Query 1643  GTTCCAGCCGCAAGAGCGTGGACGTCCTCAACACTACGCCACGACGCAGTCGCCAGACCCAATCCCTCTACATC  1716
            |.||||||||||||||||||||.||||||||..|.||.||||||||.||.||.||||||||.||||||||.|||
Sbjct 2054  GCTCCAGCCGCAAGAGCGTGGATGTCCTCAATGCCACTCCACGACGAAGCCGTCAGACCCAGTCCCTCTATATC  2127

Query 1717  CCTAACACCAGGACTTTTGACTT-CAAG  1743
            ||.||||||||||||.|..|||| ||| 
Sbjct 2128  CCCAACACCAGGACTCTCAACTTCCAA-  2154