Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12944
Subject:
XR_247045.3
Aligned Length:
4216
Identities:
753
Gaps:
3434

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGCCAGGACTGGAGTCGGTACTTAAGAGTGATGGGGTTCCCTAGATACTTTAGGCCGTCGCATCGATTATAGAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATTGAGGTGGAACCCGGGGCCTGGGAACTGGACGCACGCGGAGGGCGAAGATGGAAGCCTGGCGCTGTGTGAGG  148

Query    1  ------------------------------------------ATGTTTCCCCATCACTCGAGGAGTCTGGGCAG  32
                                                      ||||||||||||||||||||||||||||||||
Sbjct  149  AAGGGCTACGGCCACTGTGTGGTGGGAAGAGGCCGATACCCCATGTTTCCCCATCACTCGAGGAGTCTGGGCAG  222

Query   33  AGACTGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGC  106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  AGACTGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGC  296

Query  107  CTGGACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGCATTTTTCACTAAATTGGAGACCACCCTGT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CTGGACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGCATTTTTCACTAAATTGGAGACCACCCTGT  370

Query  181  TTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCA  254
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCA  444

Query  255  TCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATCAAAACGAAGAAAACACCAAGGTGTGATAA  328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATCAAAACGAAGAAAACACCAAGGTGTGATAA  518

Query  329  AGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAGATCCTAGGAGACAAAAATGTTGATCCC  402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAGATCCTAGGAGACAAAAATGTTGATCCC  592

Query  403  AAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATAATATACTTTCACAAGATTTACTGGA  476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATAATATACTTTCACAAGATTTACTGGA  666

Query  477  AGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGA  550
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGA  740

Query  551  AAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATC  624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATC  814

Query  625  AGGCCAAGTTTGGAATCACTGGGT--------------------------------------------------  648
            ||||||||||||||||||||||||                                                  
Sbjct  815  AGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATGCGGACAGGAAGGAAACCTGATGGCTGTGC  888

Query  649  ------------ACAATGCAACTTTT-----TT-------------------TTTTT---------TTTTTCTT  677
                        |||.|.|||.||||     ||                   ||.||         |.|||||.
Sbjct  889  TATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCCAGTGGAATTCTTCCGCCCTGATATTTCTC  962

Query  678  TTTT-----GAGACA-----GG----GTCTCACTCTGTC-GCCCAA---------------CTGGAGTGCA---  718
            |.||     ||||||     ||    ||.|.|||||..| ||||||               |||...||||   
Sbjct  963  TGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCAAAATTCCATATGCTGCCTGCCCTGCAATC  1036

Query  719  ---GTGGCACAAT-------------------CATGGC-------TCACTACAGC---CTCAA--------CCT  752
               ||.||| |||                   ||.|||       | |.|| |||   |.|||        .||
Sbjct 1037  TGCGTAGCA-AATACGCATCTGTTGTATAATCCAAGGCGAGGTGAT-ATTA-AGCTGACGCAATTGGCAATGCT  1107

Query  753  ACTGGGC-------TCAAGTAATCCTCTC-------ATTTCGGCTTCC--------------------------  786
            ||| |||       ||.|||..|.|.|.|       ||..|.|||||.                          
Sbjct 1108  ACT-GGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTGCCCTATTGTTATGTGTGGTGACTTT  1180

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1181  AATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGAAAATTGAATTATGAAGGACTTCCCATAGG  1254

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1255  AAAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAGTGACAGCTGAAAAATTGTCTTCAAA  1328

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1329  TTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACATTACTTTCCTGACACTGGAATTCCAGAAGTGACCA  1402

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1403  CCTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTTCTACTCTGCAGAAAAGGAAGATGTTGCTGGGCAC  1476

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1477  CCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCTAGACTGTCACTTCTTACAGAACAAGACTT  1550

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1551  ATGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCAGATCATCTGCCTTTATTGGCAAAGTTCAGACTTG  1624

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1625  AGCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCAATTTGTATTGTTTTTCAAAGAATGTAAAGTTCTT  1698

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1699  AAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTCTGAAGCGGTTATGTTAGATGCTTTGAAACTCCAT  1772

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1773  ATCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATGAAAAATATTTTCGTGACAAGTGAGCTCTAAATTC  1846

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1847  TCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAATCCTAGTAAAATTGACAGTGATTTTTAAATATAA  1920

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1921  TGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCATAATTTTGGCAAGCTCTGTAGTGGATCCAAAGTA  1994

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1995  TCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAGAAGGCTTGATTTCATTAGGAGACCCCTCTATTGA  2068

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2069  GTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGTATCCAACCAGCCATTGTTTAGTTTGTTTTT  2142

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2143  GAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATCCATCTTATTACTGTCCTGAGCCATGTAAT  2216

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2217  ATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGCATAACGTGTAAAGCTCACTCTTTCACCCT  2290

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2291  GGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATATACCTTTGTTTCCCTAGCATTTTTATTTA  2364

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2365  TTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTTGTTGCCCAGGCTGGGGGTGCAATGGCGCA  2438

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2439  ATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGAT  2512

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2513  TACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTAGAGACAGGGTTTCCCCATGTTGGTTAGGC  2586

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2587  TGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCTCAAAGTGCTGGGATTACAGGCGGGAGCCA  2660

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2661  CTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGATCTCTGGTTTAGGGGAGAGATTTTATTTTACTGAA  2734

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2735  CCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTTTGGAACAAAGTGGCAGCTATAAAATTATTTTTGT  2808

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2809  TAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTGGGGAGATATTAACTTGGAGACCTAATGCTCTGTA  2882

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2883  AATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCTAAAATGTTTTCTTTTACCGTGATGCACCAGTATG  2956

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2957  AGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGGTTTAATAAATCCTCTATACAAGTGTTTGAATCAA  3030

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3031  TTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAGTAGGAACAAGGAATTATATGCATTTTTACTAA  3104

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3105  GTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTTATTAATAGAATGCTTCACCTTAAATTGGA  3178

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3179  AAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGCTATAATTATTTTTAAAAAAACAAACAGAT  3252

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3253  GAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAAAAATTGTAATTGAATATGTTTAAATATTT  3326

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3327  AATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGGTGTCTCACGCTATCGCCCAGGCTGGAGTG  3400

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3401  CAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTTCCTCAGCCTCCCAAG  3474

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3475  TAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGAATTTTGCCAT  3548

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3549  GTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCACCCGCCTCGGGCTCCCAAAGTGCTGTGATT  3622

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3623  ACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTTAATTACAGTATTAATTATAGTTCTAGGATTTCCC  3696

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3697  ACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTAATTAGCAGATATAGACATTATCAAATTATAATGA  3770

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3771  TAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAATGAAAATTCATTAGTTAATTACTGCTTTGTGTTGT  3844

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3845  GTGAATTTATTAACAAATAACATTATTACATATAGGTCATTGTTAACAAACAAACATCCCTGAAAACCTCTGTG  3918

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3919  AAAATTTAATTTTTTATATCCTGATTAATATATTGTGACTTTAGGCCCATTTTTCATGTGCTTCACTTTGATAG  3992

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3993  AGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAATGAAGTATTATTTTGTGGACTGGAGGCCAAAAAG  4066

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4067  TCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAATTATCCACTTGTCTTTACTTTTGTTGACC  4140

Query  787  ------------------------------------------------------------------------  786
                                                                                    
Sbjct 4141  AGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAAACAATTAAATCTGGTTAATGCCTGAAA  4212

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