Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12944
- Subject:
- XR_247045.3
- Aligned Length:
- 4216
- Identities:
- 753
- Gaps:
- 3434
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCCAGGACTGGAGTCGGTACTTAAGAGTGATGGGGTTCCCTAGATACTTTAGGCCGTCGCATCGATTATAGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATTGAGGTGGAACCCGGGGCCTGGGAACTGGACGCACGCGGAGGGCGAAGATGGAAGCCTGGCGCTGTGTGAGG 148
Query 1 ------------------------------------------ATGTTTCCCCATCACTCGAGGAGTCTGGGCAG 32
||||||||||||||||||||||||||||||||
Sbjct 149 AAGGGCTACGGCCACTGTGTGGTGGGAAGAGGCCGATACCCCATGTTTCCCCATCACTCGAGGAGTCTGGGCAG 222
Query 33 AGACTGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGC 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AGACTGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGC 296
Query 107 CTGGACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGCATTTTTCACTAAATTGGAGACCACCCTGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTGGACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGCATTTTTCACTAAATTGGAGACCACCCTGT 370
Query 181 TTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCA 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCA 444
Query 255 TCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATCAAAACGAAGAAAACACCAAGGTGTGATAA 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATCAAAACGAAGAAAACACCAAGGTGTGATAA 518
Query 329 AGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAGATCCTAGGAGACAAAAATGTTGATCCC 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAGATCCTAGGAGACAAAAATGTTGATCCC 592
Query 403 AAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATAATATACTTTCACAAGATTTACTGGA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATAATATACTTTCACAAGATTTACTGGA 666
Query 477 AGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGA 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGA 740
Query 551 AAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATC 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATC 814
Query 625 AGGCCAAGTTTGGAATCACTGGGT-------------------------------------------------- 648
||||||||||||||||||||||||
Sbjct 815 AGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATGCGGACAGGAAGGAAACCTGATGGCTGTGC 888
Query 649 ------------ACAATGCAACTTTT-----TT-------------------TTTTT---------TTTTTCTT 677
|||.|.|||.|||| || ||.|| |.|||||.
Sbjct 889 TATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCCAGTGGAATTCTTCCGCCCTGATATTTCTC 962
Query 678 TTTT-----GAGACA-----GG----GTCTCACTCTGTC-GCCCAA---------------CTGGAGTGCA--- 718
|.|| |||||| || ||.|.|||||..| |||||| |||...||||
Sbjct 963 TGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCAAAATTCCATATGCTGCCTGCCCTGCAATC 1036
Query 719 ---GTGGCACAAT-------------------CATGGC-------TCACTACAGC---CTCAA--------CCT 752
||.||| ||| ||.||| | |.|| ||| |.||| .||
Sbjct 1037 TGCGTAGCA-AATACGCATCTGTTGTATAATCCAAGGCGAGGTGAT-ATTA-AGCTGACGCAATTGGCAATGCT 1107
Query 753 ACTGGGC-------TCAAGTAATCCTCTC-------ATTTCGGCTTCC-------------------------- 786
||| ||| ||.|||..|.|.|.| ||..|.|||||.
Sbjct 1108 ACT-GGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTGCCCTATTGTTATGTGTGGTGACTTT 1180
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1181 AATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGAAAATTGAATTATGAAGGACTTCCCATAGG 1254
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1255 AAAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAGTGACAGCTGAAAAATTGTCTTCAAA 1328
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1329 TTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACATTACTTTCCTGACACTGGAATTCCAGAAGTGACCA 1402
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1403 CCTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTTCTACTCTGCAGAAAAGGAAGATGTTGCTGGGCAC 1476
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1477 CCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCTAGACTGTCACTTCTTACAGAACAAGACTT 1550
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1551 ATGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCAGATCATCTGCCTTTATTGGCAAAGTTCAGACTTG 1624
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1625 AGCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCAATTTGTATTGTTTTTCAAAGAATGTAAAGTTCTT 1698
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1699 AAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTCTGAAGCGGTTATGTTAGATGCTTTGAAACTCCAT 1772
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1773 ATCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATGAAAAATATTTTCGTGACAAGTGAGCTCTAAATTC 1846
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1847 TCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAATCCTAGTAAAATTGACAGTGATTTTTAAATATAA 1920
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1921 TGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCATAATTTTGGCAAGCTCTGTAGTGGATCCAAAGTA 1994
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1995 TCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAGAAGGCTTGATTTCATTAGGAGACCCCTCTATTGA 2068
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2069 GTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGTATCCAACCAGCCATTGTTTAGTTTGTTTTT 2142
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2143 GAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATCCATCTTATTACTGTCCTGAGCCATGTAAT 2216
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2217 ATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGCATAACGTGTAAAGCTCACTCTTTCACCCT 2290
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2291 GGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATATACCTTTGTTTCCCTAGCATTTTTATTTA 2364
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2365 TTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTTGTTGCCCAGGCTGGGGGTGCAATGGCGCA 2438
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2439 ATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGAT 2512
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2513 TACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTAGAGACAGGGTTTCCCCATGTTGGTTAGGC 2586
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2587 TGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCTCAAAGTGCTGGGATTACAGGCGGGAGCCA 2660
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2661 CTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGATCTCTGGTTTAGGGGAGAGATTTTATTTTACTGAA 2734
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2735 CCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTTTGGAACAAAGTGGCAGCTATAAAATTATTTTTGT 2808
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2809 TAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTGGGGAGATATTAACTTGGAGACCTAATGCTCTGTA 2882
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2883 AATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCTAAAATGTTTTCTTTTACCGTGATGCACCAGTATG 2956
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2957 AGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGGTTTAATAAATCCTCTATACAAGTGTTTGAATCAA 3030
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3031 TTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAGTAGGAACAAGGAATTATATGCATTTTTACTAA 3104
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3105 GTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTTATTAATAGAATGCTTCACCTTAAATTGGA 3178
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3179 AAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGCTATAATTATTTTTAAAAAAACAAACAGAT 3252
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3253 GAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAAAAATTGTAATTGAATATGTTTAAATATTT 3326
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3327 AATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGGTGTCTCACGCTATCGCCCAGGCTGGAGTG 3400
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3401 CAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTTCCTCAGCCTCCCAAG 3474
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3475 TAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGAATTTTGCCAT 3548
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3549 GTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCACCCGCCTCGGGCTCCCAAAGTGCTGTGATT 3622
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3623 ACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTTAATTACAGTATTAATTATAGTTCTAGGATTTCCC 3696
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3697 ACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTAATTAGCAGATATAGACATTATCAAATTATAATGA 3770
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3771 TAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAATGAAAATTCATTAGTTAATTACTGCTTTGTGTTGT 3844
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3845 GTGAATTTATTAACAAATAACATTATTACATATAGGTCATTGTTAACAAACAAACATCCCTGAAAACCTCTGTG 3918
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3919 AAAATTTAATTTTTTATATCCTGATTAATATATTGTGACTTTAGGCCCATTTTTCATGTGCTTCACTTTGATAG 3992
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3993 AGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAATGAAGTATTATTTTGTGGACTGGAGGCCAAAAAG 4066
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4067 TCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAATTATCCACTTGTCTTTACTTTTGTTGACC 4140
Query 787 ------------------------------------------------------------------------ 786
Sbjct 4141 AGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAAACAATTAAATCTGGTTAATGCCTGAAA 4212
