Nucleotide Global Alignment

Description

Query:
ccsbBroad304_12945
Subject:
NR_125333.1
Aligned Length:
4391
Identities:
731
Gaps:
3660

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTTAAGGCATTCAGGGACTCTGACTGCGCAAGATGGAGTGTAGGCCGGCCGGCGAGACTGCACCTCCCAGCATG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCTTGCAGCCAGGACTGGAGTCGGTACTTAAGAGTGATGGGGTTCCCTAGATACTTTAGGCCGTCGCATCGATT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ATAGAGATTGAGGTGGAACCCGGGGCCTGGGAACTGGACGCACGCGGAGGGCGAAGATGGAAGCCTGGCGCTGT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GTGAGGAAGGGCTACGGCCACTGTGTGGTGGGAAGAGGCCGGTGTGATAAAGCGGAATTGGGAATATATATGTA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GCCATGATAAAGAAAAAACGAAGATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAG  370

Query    1  ---------------ATGTCCTATAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACA  59
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TTTGACTTTTCAGTGATGTCCTATAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACA  444

Query   60  TTGCCGGCGGCCAGTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAG  133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TTGCCGGCGGCCAGTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAG  518

Query  134  ACGTACTTTGTTTGCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGT  207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  ACGTACTTTGTTTGCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGT  592

Query  208  TATCACTGTGAATATAAGATGCGGACAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATT  281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TATCACTGTGAATATAAGATGCGGACAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATT  666

Query  282  TTCACTCTTGTCAGTGAACCCAGTGGAATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGAT  355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TTCACTCTTGTCAGTGAACCCAGTGGAATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGAT  740

Query  356  TAGTTTTACTCTTACAGCCCAAAATTCCATATGCTGCCTGCCCTGCAATCTGCGTAGCAAATACGCATCTGTTG  429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TAGTTTTACTCTTACAGCCCAAAATTCCATATGCTGCCTGCCCTGCAATCTGCGTAGCAAATACGCATCTGTTG  814

Query  430  TATAATCCAAGGCGAGGTGATATTAAGCTGACGCAATTGGCAATGCTACTGGCAGAGATTTCCAGTGTTGCCCA  503
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TATAATCCAAGGCGAGGTGATATTAAGCTGACGCAATTGGCAATGCTACTGGCAGAGATTTCCAGTGTTGCCCA  888

Query  504  CCAGAAAGATGGCAGCTTCTGCCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATA  577
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CCAGAAAGATGGCAGCTTCTGCCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATA  962

Query  578  GTTTCATAAAGGAAGGAAAATTGAATTATGAAGGACTTCCCATAGGAAAGGTATCTGGCCAGGAACAGTCTTCA  651
            ||||||||||||||||||||||||||||||||||||||||||||||||                          
Sbjct  963  GTTTCATAAAGGAAGGAAAATTGAATTATGAAGGACTTCCCATAGGAA--------------------------  1010

Query  652  CGGGGACAAAGAATTTTATCTATTCCAATTTGGCCCCCAAACCTAGGTATCTCACAGAACTGTGTGTATGAGGT  725
                                                                                      
Sbjct 1011  --------------------------------------------------------------------------  1010

Query  726  ACAGCAGGTACCAAAAGTAGAAAAGACAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAG  799
                                       |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011  ---------------------------AGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAG  1057

Query  800  TGACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTAT---------------  858
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
Sbjct 1058  TGACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACATTACTTTCCT  1131

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1132  GACACTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTTCTACTCTGC  1205

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1206  AGAAAAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCTAGAC  1279

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1280  TGTCACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCAGATCATCTG  1353

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1354  CCTTTATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCAATTTGTATT  1427

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1428  GTTTTTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTCTGAAGCGGT  1501

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1502  TATGTTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATGAAAAATATT  1575

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1576  TTCGTGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAATCCTAGTAA  1649

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1650  AATTGACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCATAATTTTGG  1723

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1724  CAAGCTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAGAAGGCTTGA  1797

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1798  TTTCATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGTATCCA  1871

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1872  ACCAGCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATCCATC  1945

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1946  TTATTACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGCATAA  2019

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2020  CGTGTAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATATACC  2093

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2094  TTTGTTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTTGTTG  2167

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2168  CCCAGGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCTCCTG  2241

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2242  CCTCAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTAGAGA  2315

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2316  CAGGGTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCTCAAA  2389

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2390  GTGCTGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGATCTCTGGTTT  2463

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2464  AGGGGAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTTTGGAACAAA  2537

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2538  GTGGCAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTGGGGAGATAT  2611

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2612  TAACTTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCTAAAATGTTT  2685

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2686  TCTTTTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGGTTTAATAAA  2759

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2760  TCCTCTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAGTAGGAAC  2833

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2834  AAGGAATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTTATTA  2907

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2908  ATAGAATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGCTATA  2981

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2982  ATTATTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAAAAAT  3055

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3056  TGTAATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGGTGTC  3129

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3130  TCACGCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGC  3203

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3204  AATTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTGTATT  3277

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3278  TTTAGTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCACCCGC  3351

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3352  CTCGGGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTTAATTACAGT  3425

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3426  ATTAATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTAATTAGCAGA  3499

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3500  TATAGACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAATGAAAATTCA  3573

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3574  TTAGTTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAGGTCATTGTTAACAA  3647

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3648  ACAAACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGTGACTTTAGGCCCA  3721

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3722  TTTTTCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAATGAAGTATT  3795

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3796  ATTTTGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAATTAT  3869

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3870  CCACTTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAAACAA  3943

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3944  TTAAATCTGGTTAATGCCTGAAACCAAATCTCTCAGTCTCAAGTGTTATACTATCCAAGTTTTAAATGGAAAGG  4017

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 4018  TAAACTGTGGAGTAATGAAATTTTGGTTTTACTGTACCTTTTGCTATCAAGATAATATTCATGTTTGAAATCTT  4091

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 4092  GTCTTTATTTGGAATTTAGTTACTGTCTGCTTTTAACCTTTGCTTTCCTAAAGAAAGTTTGAGATCCAGAGAGT  4165

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 4166  TCAAGGGATTGGGGAAAGAGAGGCGTCAAGTCATTTGCACTTTGTACCTGTAAGTTAGGTAATAAACTATTATA  4239

Query  859  -------------------------  858
                                     
Sbjct 4240  CTCGTAAAAAAAAAAAAAAAAAAAA  4264

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