Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13005
Subject:
XM_011247018.1
Aligned Length:
2538
Identities:
2065
Gaps:
225

Alignment

Query    1  ATGAAAATGGCTGACAGAAGTGGGAAGATTATTCCAGGACAAGTGTATATTGAGGTGGAATATGATTATGAATA  74
                  |||||.||.||||||||.|||||.|.|.|||||||||.|||||||||||||||.|||||||||||.||
Sbjct    1  ------ATGGCCGAGAGAAGTGGAAAGATCACTGCAGGACAAGCGTATATTGAGGTGGAGTATGATTATGAGTA  68

Query   75  TGAAGCAAAGGACAGAAAGATTGTGATAAAACAAGGGGAGAGGTACATCTTGGTGAAAAAGACCAATGATGACT  148
            |||.|||||||||||||||||||||||.|.||||||||||.|.|||.||.|||||||.||||||||||||||||
Sbjct   69  TGACGCAAAGGACAGAAAGATTGTGATCAGACAAGGGGAGCGCTACCTCCTGGTGAAGAAGACCAATGATGACT  142

Query  149  GGTGGCAAGTCAAGCCAGATGAAAACTCCAAAGCGTTTTATGTGCCAGCCCAGTATGTGAAGGAGGTCACGCGC  222
            ||||||||||||..||.|||||.|||||.|||||.||||||||||||||.||||||||.|||||||||||.|||
Sbjct  143  GGTGGCAAGTCAGACCTGATGAGAACTCAAAAGCATTTTATGTGCCAGCACAGTATGTCAAGGAGGTCACTCGC  216

Query  223  AAAGCTCTCATGCCACCTGTTAAGCAGGTAGCTGGTCTGCCAAATAACTCCACGAAAATAATGCAGAGTTTGCA  296
            ||||||||.|||||||||||.|||||||.|.|.||.||||||||||||||.|.|||.|.|||.||||||.||||
Sbjct  217  AAAGCTCTGATGCCACCTGTGAAGCAGGCAACAGGACTGCCAAATAACTCTATGAAGACAATACAGAGTATGCA  290

Query  297  TCTTCAGAGATCAACAGAAAATGTGAACAAATTGCCTGAGCTTTCAAGTTTCGGAAAGCCATCGTCATCTGTTC  370
            |||.||||||||.||||||||||||||||||.|||||||||||||||||||.||||||||||||||||||||||
Sbjct  291  TCTCCAGAGATCGACAGAAAATGTGAACAAAATGCCTGAGCTTTCAAGTTTTGGAAAGCCATCGTCATCTGTTC  364

Query  371  AAGGAACAGGTCTTATTCGTGATGCCAATCAGAATTTTGGACCCAGTTATAATCAAGGTCAGACTGTCAACCTA  444
            |||||||||||||||||||||||||||||||||||||.|||.|||.|||||||..|||.||||||.||||||||
Sbjct  365  AAGGAACAGGTCTTATTCGTGATGCCAATCAGAATTTCGGATCCAATTATAATTCAGGCCAGACTCTCAACCTA  438

Query  445  AGCCTGGACCTGACCCATAATAACGGAAAGTTTAACAATGACTCACATTCTCCTAAAGTTTCCAGCCAGAATAG  518
            |||||||||||||||||||||||.|||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct  439  AGCCTGGACCTGACCCATAATAATGGAAAGTTTAACAGTGACTCACATTCTCCTAAAGTTTCCAGCCAGAATAG  512

Query  519  GACACGCTCATTTGGTCATTTTCCCGGTCCAGAGTTCTTGGATGTAGAGAAAACTAGCTTCTCCCAGGAACAAT  592
            ||||||||.||||||||||||||||||.||||||||||||||..|||||||||||||||||||.||||||||.|
Sbjct  513  GACACGCTTATTTGGTCATTTTCCCGGGCCAGAGTTCTTGGACATAGAGAAAACTAGCTTCTCTCAGGAACAGT  586

Query  593  CTTGTGATTCCGCAGGAGAAGGCTCTGAAAGAATACATCAAGATTCTGAATCTGGTGATGAACTTAGCAGCAGC  666
            |.|||||.||.||.|||||||||||.|||||||||||.||.|||||.||.|||||.||||||||||||||||||
Sbjct  587  CATGTGACTCAGCTGGAGAAGGCTCCGAAAGAATACAGCAGGATTCCGAGTCTGGAGATGAACTTAGCAGCAGC  660

Query  667  TCCACTGAACAGATAAGGGCAACCACACCTCCAAATCAAGGAAGGCCAGATTCTCCTGTCTATGCTAACCTTCA  740
            ||||||||.|||||.||||||||||||||.||.|||||||||||||||||||||||.||||||||||||||.||
Sbjct  661  TCCACTGAGCAGATGAGGGCAACCACACCCCCTAATCAAGGAAGGCCAGATTCTCCAGTCTATGCTAACCTACA  734

Query  741  AGAACTGAAAATATCCCAGTCTGCTCTTCCCCCACTTCCTGGGAGCCCGGCAATTCAGATTAATGGAGAATGGG  814
            .||||||||||||||.||||||||||||||.||.||||||||||||||.||||||||..|||||||.|||||||
Sbjct  735  GGAACTGAAAATATCACAGTCTGCTCTTCCTCCTCTTCCTGGGAGCCCAGCAATTCAAGTTAATGGGGAATGGG  808

Query  815  AAACTCATAAAGACAGCTCAGGGCGTTGCTATTACTATAACAGAGGGACACAGGAAAGAACTTGGAAACCTCCT  888
            |.|||||.||||||||.|||||.|||||.||.|||||||||.|....||.|||||..||||.||||||||.|||
Sbjct  809  AGACTCACAAAGACAGTTCAGGCCGTTGTTACTACTATAACCGCACAACCCAGGAGCGAACCTGGAAACCACCT  882

Query  889  CGTTGGACTCGGGATGCAAGCATCAGCAAAGGAGATTTCCAAAATCCAGGGGATCAAG----------------  946
            ||.|||.||||.||||..||||..|||   .|||||||.||.|..|||||.||.||||                
Sbjct  883  CGATGGGCTCGAGATGTGAGCACAAGC---CGAGATTTTCAGAGCCCAGGAGAGCAAGAGCCTCTTTCATCAGA  953

Query  947  --------------------------------------------------------------------------  946
                                                                                      
Sbjct  954  AGAAAACTACCACAGCAGTTGTTTCAGCCAGTCAGATAGTCAGTGTGGCTCTCCTCCCAGGGGTTGGTCAGAAG  1027

Query  947  ---------------------------------------------------AGTGGCTCAAGCATGTTGATGAT  969
                                                               |||||||||||||||||||||||
Sbjct 1028  AGCTGGATGAACGTGGGCATACCTTGTATACCAGTGACTATACTAAGGAAAAGTGGCTCAAGCATGTTGATGAT  1101

Query  970  CAAGGTAGACAATATTACTACAGTGCAGACGGATCTCGGTCAGAATGGGAATTGCCAAAGTATAATGCTTCATC  1043
            |||||||||||.|||||||||||.|||||.||||||||||||||.|||||||||||||||||||||||||||||
Sbjct 1102  CAAGGTAGACAGTATTACTACAGCGCAGATGGATCTCGGTCAGAGTGGGAATTGCCAAAGTATAATGCTTCATC  1175

Query 1044  CCAGCAGCAAAGAGAAATAATTAAAAGTAGGAGCCTGGACAGGCGGCTGCAAGAACCAATAGTATTAACAAAGT  1117
            .|||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||.|||||.||.|
Sbjct 1176  TCAGCAGCAAAGAGAAATAATTAAAAGTAGGAGCTTGGACAGGCGGCTGCAAGAACCAATAGTGTTAACTAAAT  1249

Query 1118  GGAGACATAGCACCATTGTATTGGACACTAATGATAAGGAATCTCCAACTGCCTCAAAACCCTGCTTTCCTGAA  1191
            |||||||||||||||||||.|||||                 |||||||                      || 
Sbjct 1250  GGAGACATAGCACCATTGTGTTGGA-----------------CTCCAAC----------------------GA-  1283

Query 1192  AATGAGTCTTCTCCCTCCTCACCAAAGCACCAAGATACAGCCAGCAGTCCAAAGGATCAAGAGAAATATGGATT  1265
                                          ||||     |||.||||||..||||.|||.||||||||||||.|
Sbjct 1284  ------------------------------CAAG-----GCCGGCAGTCTGAAGGGTCAGGAGAAATATGGACT  1322

Query 1266  ATTAAATGTAACAAAAATTGCTGAAAATGGGAAAAAGGTTCGAAAGAACTGGTTGTCTTCTTGGGCGGTGTTGC  1339
            .||||||||||||||||||.||||||||||||||||.|||||||||||||||||||||||||||||.|||.|||
Sbjct 1323  GTTAAATGTAACAAAAATTACTGAAAATGGGAAAAAAGTTCGAAAGAACTGGTTGTCTTCTTGGGCAGTGCTGC  1396

Query 1340  AGGGTTCATCTTTACTTTTTACCAAAACTCAAGGAAGTAGCACAAGTTGGTTTGGCAGTAATCAGTCCAAACCA  1413
            |||||||.||||||||||||||.|||||||||||||||||.|||||.||||||||.||||||||||||||||||
Sbjct 1397  AGGGTTCGTCTTTACTTTTTACGAAAACTCAAGGAAGTAGTACAAGCTGGTTTGGGAGTAATCAGTCCAAACCA  1470

Query 1414  GAGTTCACAGTGGACCTCAAGGGGGCAACAATTGAGATGGCTTCAAAGGATAAATCCAGCAAAAAGAATGTATT  1487
            ||.||||||||||||||.|||||||||...|||||.|||||.||||||||.|||||.|||||.|||||||||||
Sbjct 1471  GAATTCACAGTGGACCTGAAGGGGGCAGTGATTGAAATGGCATCAAAGGACAAATCGAGCAAGAAGAATGTATT  1544

Query 1488  TGAGCTGAAAACTCGTCAAGGAACAGAACTGCTAATTCAGTCTGACAATGACACTGTTATTAATGATTGGTTTA  1561
            |||||||||||||||.|||||||||||||||||||||||||||||.|||||..|||||||||||||||||||||
Sbjct 1545  TGAGCTGAAAACTCGACAAGGAACAGAACTGCTAATTCAGTCTGATAATGATGCTGTTATTAATGATTGGTTTA  1618

Query 1562  AAGTTCTTAGTAGTACAATCAATAATCAGGCAGTAGAAACTGATGAAGGAATTGAAGAGGAGATACCGGATTCA  1635
            ||||||||||||||||.||||||||.||||.||.|||..|.|||||||.|..|||||||||.|.|||.||||||
Sbjct 1619  AAGTTCTTAGTAGTACTATCAATAACCAGGTAGCAGAGGCCGATGAAGCAGCTGAAGAGGAAACACCAGATTCA  1692

Query 1636  CCAGGAATAGAAAAGCATGATAAAGAAAAGGAACAAAAGGATCCCAAAAAGCTTCGTTCCTTTAAAGTATCTAG  1709
            |||||..|||||||||||||||||||||||||.||.|||||.|..|||||.|||||.||..|.||||.|||.||
Sbjct 1693  CCAGGGGTAGAAAAGCATGATAAAGAAAAGGACCAGAAGGAGCTTAAAAAACTTCGCTCAATGAAAGGATCCAG  1766

Query 1710  CATAGATTCTTCAGAACAGAAAAAAACCAAGAAAAACTTAAAGAAGTTTCTTACACGACGCCCCACTTTGCAAG  1783
            |||.|||||||||||.|||||.|||||.||||||||||||||||||||||||||.||.||||||||||||||||
Sbjct 1767  CATGGATTCTTCAGAGCAGAAGAAAACTAAGAAAAACTTAAAGAAGTTTCTTACCCGGCGCCCCACTTTGCAAG  1840

Query 1784  CTGTTCGTGAAAAAGGTTATATTAAAGATCAGGTATTTGGATCCAATCTCGCTAATCTGTGTCAGAGAGAGAAT  1857
            ||||||||||.|||||||||||.||||||||.|||||||||||.|||||.|||||||||||||||||.||||||
Sbjct 1841  CTGTTCGTGAGAAAGGTTATATCAAAGATCAAGTATTTGGATCTAATCTTGCTAATCTGTGTCAGAGGGAGAAT  1914

Query 1858  GGCACAGTACCAAAGTTTGTGAAGTTATGTATTGAACATGTTGAAGAACATGGTTTGGATATTGATGGGATATA  1931
            ||.|||||.||||||||||||||||||||.|||||.|||||.|||||.||||||||.|||.|||||||.||.||
Sbjct 1915  GGGACAGTGCCAAAGTTTGTGAAGTTATGCATTGAGCATGTCGAAGAGCATGGTTTAGATGTTGATGGTATTTA  1988

Query 1932  CAGAGTAAGTGGCAACCTCGCAGTGATCCAGAAACTAAGGTTTGCAGTCAATCATGATGAGAAATTGGACTTGA  2005
            ||||||.|||||||||||.||.|||||||||||.||.|||||.||||||||||||||||||||.||||||||||
Sbjct 1989  CAGAGTGAGTGGCAACCTTGCCGTGATCCAGAAGCTGAGGTTCGCAGTCAATCATGATGAGAAGTTGGACTTGA  2062

Query 2006  ATGACAGTAAATGGGAAGATATTCATGTCATTACTGGAGCCCTCAAAATGTTTTTTCGAGAATTACCAGAACCT  2079
            |||||||||||||||||||.|||||||||||.||.|||||.|||||||||||||||||||||.|||||||||||
Sbjct 2063  ATGACAGTAAATGGGAAGACATTCATGTCATCACGGGAGCACTCAAAATGTTTTTTCGAGAACTACCAGAACCT  2136

Query 2080  CTTTTTACATTTAATCATTTTAATGATTTTGTTAATGCAATTAAGCAAGAACCAAGACAGCGAGTCGCTGCTGT  2153
            ||||||||.|||||||||||.|||||||||||||||||||||||.||||||||.||||||||.|||.||||.||
Sbjct 2137  CTTTTTACGTTTAATCATTTCAATGATTTTGTTAATGCAATTAAACAAGAACCGAGACAGCGTGTCACTGCAGT  2210

Query 2154  TAAGGACCTAATCAGACAGTTGCCAAAGCCAAACCAAGACACAATGCAGATTCTTTTCCGACATCTCAGAAGAG  2227
            |||||||||||||||||||||||||||||||||.|||||.||||||||||||||.||..|||||||||.|||.|
Sbjct 2211  TAAGGACCTAATCAGACAGTTGCCAAAGCCAAATCAAGATACAATGCAGATTCTGTTTAGACATCTCAAAAGGG  2284

Query 2228  TTATAGAAAATGGAGAGAAAAATCGAATGACCTATCAGAGTATAGCAATTGTTTTTGGTCCCACTCTATTAAAA  2301
            ||||||||||||||||.|||||.|||||||||||||||||.|||||.|||||||||||.|||||.||..||||.
Sbjct 2285  TTATAGAAAATGGAGAAAAAAACCGAATGACCTATCAGAGCATAGCGATTGTTTTTGGCCCCACCCTTCTAAAG  2358

Query 2302  CCAGAAAAAGAGACTGGTAATATAGCAGTTCATACTGTGTACCAGAATCAGATTGTAGAATTAATTCTTCTGGA  2375
            |||||||.|||||||||||||||||||||||||||||||||||||||.|||||||||||..|.|||||.|||||
Sbjct 2359  CCAGAAAGAGAGACTGGTAATATAGCAGTTCATACTGTGTACCAGAACCAGATTGTAGAGCTGATTCTCCTGGA  2432

Query 2376  ACTGAGTTCCATCTTCGGACGT  2397
            |.|.||..|..||||.||||||
Sbjct 2433  ATTAAGCACTGTCTTTGGACGT  2454

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