Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13019
- Subject:
- NR_157849.2
- Aligned Length:
- 5239
- Identities:
- 1218
- Gaps:
- 3981
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCCGCCTCCCAACCGTGAGGTGTTGGGTTTGGGGGACGCTGGCAGCTGGGTTCTCCCGGTTCCCTTGGGCAGGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCAGGGTCGGGTTCAAAGCCTCCGGAACGCGTTTTGGCCTGATTTGAGGAGGGGGGCGGGGAGGGACCTGCGGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTGCGGCCCCGCCCCCTTCTCCGGCTCGCAGCCGACCGGTAAGCCCGCCTCCTCCCTCGGCCGGCCCTGGGGCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTGTCCGCCGGGCAACTCCAGCCGAGGCCTGGGCTTCTGCCTGCAGGTGTCTGCGGCGAGGCCCCTAGGGTACA 296
Query 1 ---------------ATGGTGGGTTTCGGGGCCAACCGGCGGGCTGGCCGCCTGCCCTCTCTCGTGCTGGTGGT 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GCCCGATTTGGCCCCATGGTGGGTTTCGGGGCCAACCGGCGGGCTGGCCGCCTGCCCTCTCTCGTGCTGGTGGT 370
Query 60 GCTGCTGGTGGTGATCGTCGTCCTCGCCTTCAACTACTGGAGCATCTCCTCCCGCCACGTCCTGCTTCAGGAGG 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GCTGCTGGTGGTGATCGTCGTCCTCGCCTTCAACTACTGGAGCATCTCCTCCCGCCACGTCCTGCTTCAGGAGG 444
Query 134 AGGTGGCCGAGCTGCAGGGCCAGGTCCAGCGCACCGAAGTGGCCCGCGGGCGGCTGGAAAAGCGCAATTCGGAC 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AGGTGGCCGAGCTGCAGGGCCAGGTCCAGCGCACCGAAGTGGCCCGCGGGCGGCTGGAAAAGCGCAATTCGGAC 518
Query 208 CTCTTGCTGTTGGTGGACACGCACAAGAAACAGATCGACCAGAAGGAGGCCGACTACGGCCGCCTCAGCAGCCG 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CTCTTGCTGTTGGTGGACACGCACAAGAAACAGATCGACCAGAAGGAGGCCGACTACGGCCGCCTCAGCAGCCG 592
Query 282 GCTGCAGGCCAGAGAGGGCCTCGGGAAGAGATGCGAGGATGACAAGGTTAAACTACAGAACAACATATCGTATC 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCTGCAGGCCAGAGAGGGCCTCGGGAAGAGATGCGAGGATGACAAGGTTAAACTACAGAACAACATATCGTATC 666
Query 356 AGATGGCAGACATACATCATTTAAAGGAGCAACTTGCTGAGCTTCGTCAGGAATTTCTTCGACAAGAAGACCAG 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGATGGCAGACATACATCATTTAAAGGAGCAACTTGCTGAGCTTCGTCAGGAATTTCTTCGACAAGAAGACCAG 740
Query 430 CTTCAGGACTATAGGAAGAACAATACTTACCTTGTGAAGAGGTTAGAATATGAAAGTTTTCAGTGTGGACAGCA 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CTTCAGGACTATAGGAAGAACAATACTTACCTTGTGAAGAGGTTAGAATATGAAAGTTTTCAGTGTGGACAGCA 814
Query 504 GATGAAGGAATTGAGAGCACAGCATGAAGAAAATATTAAAAAGTTAGCAGACCAGTTTTTAGAGGAACAAAAGC 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GATGAAGGAATTGAGAGCACAGCATGAAGAAAATATTAAAAAGTTAGCAGACCAGTTTTTAGAGGAACAAAAGC 888
Query 578 AAGAGACCCAAAAGATTCAATCAAATGATGGAAAGGAATTGGATATAAACAATCAAGTAGTACCTAAAAATATT 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AAGAGACCCAAAAGATTCAATCAAATGATGGAAAGGAATTGGATATAAACAATCAAGTAGTACCTAAAAATATT 962
Query 652 CCAAAAGTAGCTGAGAATGTTGCAGATAAGAATGAAGAACCCTCAAGCAATCATATTCCACATGGGAAAGAACA 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CCAAAAGTAGCTGAGAATGTTGCAGATAAGAATGAAGAACCCTCAAGCAATCATATTCCACATGGGAAAGAACA 1036
Query 726 AATCAAAAGAGGTGGTGATGCAGGGATGCCTGGAATAGAAGAGAATGACCTAGCAAAAGTTGATGATCTTCCCC 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AATCAAAAGAGGTGGTGATGCAGGGATGCCTGGAATAGAAGAGAATGACCTAGCAAAAGTTGATGATCTTCCCC 1110
Query 800 CT------------------------------------------------------------------------ 801
||
Sbjct 1111 CTGCATCCAGGAAAAGCTTTTAGGTTTTGTGTGTGTGTGTGTGTGTGTGTGACAGAGTCTCGCTCTGTTGTCCA 1184
Query 802 -------------------------------------------------------------------------- 801
Sbjct 1185 GGCTGAAGTATAGTAGCGTGATCTTGGCTCACTGCAACCTGCGCCTCCTGGGTTCAAGCAATTCTTCTGTCTCA 1258
Query 802 -------------------------------------------------------------------------- 801
Sbjct 1259 GCCTCCCAAGTAGCTGAGATTACAGGCGCCTGCCACCATGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGG 1332
Query 802 -------------------------------------------------------------------------- 801
Sbjct 1333 GGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGT 1406
Query 802 -------------------------------------------------------------------------- 801
Sbjct 1407 TCTGGGATTACAGGTGTGAGCCGCAGCACCTGGCCAGGCTTTTAGTTTTTAAATATTAGGTAGAGGTAATCTAT 1480
Query 802 -------------------------------------------------------------------------- 801
Sbjct 1481 TTGTAAGATAACAGATTTTCTAGAACAGAGGCTTCGAATGGTGGTTGCATATTGGAATCTCTGGGGAGCTTGAA 1554
Query 802 -------------------------------------------------------------------------- 801
Sbjct 1555 AAAAAAAAAGATACTGATGCCTAAATTCCATTCCAGAGATTTTGTTATATTTGTTCTGGGGTTTGACTTGGGCA 1628
Query 802 -------------------------------------------------------------------------- 801
Sbjct 1629 TTGAAGGTTTAAATGGTCACTAGGTGATTACATTATGTAGCTAAGGCAGAAAAACCTTTACTCTAGACAGATTC 1702
Query 802 -------------------------------------------------------------------------- 801
Sbjct 1703 TCTAGATCTATACTGTATTAATGCAGTAGCCATTGGTCACATGTGGCTATTTACATTTAAATTCATTACATTTA 1776
Query 802 -------------------------------------------------------------------------- 801
Sbjct 1777 GGTGAAATTAAATTCAGTTTCTTAGTCAAACTAGCTACACTTAAAGTGCTTACTTAGTAGTTACCTGTGGCTAA 1850
Query 802 -------------------------------------------------------------------------- 801
Sbjct 1851 AGGCAACTGTGTTGGACAGCACCAATGCAGAACATTTTCATTATTGTAGAAAGTTCTGTTGGACAGTACTGCTC 1924
Query 802 -------------------------------------------------------------------------- 801
Sbjct 1925 TAGATTGAAACCAGTAATAGTGGTTTTATGGGGAAGAAGATTAGGACAGGGATGAAAAGGTGACTTGCTTTTCA 1998
Query 802 -------------------------------------------------------------------------- 801
Sbjct 1999 TTATATAATCTTCTGAACTTTTAAATTTTTGTATAATACTAATAAACTACCTATTCAAAAAAATCATTATTTAA 2072
Query 802 -------------------------------------------------------------------------- 801
Sbjct 2073 AAAAATTAAAGAGAGGCTAGGTGTAGTGGCTTACGCCTGTAATCCCAACACTTTGGGAAGCCTAGGCAAGAGGA 2146
Query 802 -------------------------------------------------------------------------- 801
Sbjct 2147 TTGCTTGAGGCCAGGAGTTCGAGGCTTGGGCAACATAACAAGACCTCATATCTTAGGAAAAAAAAAAATGGCTA 2220
Query 802 -------------------------------------------------------------------------- 801
Sbjct 2221 GGCATAGTGGCACACACCTGTAGTCCTAGCTACTTGGGAAGCTGAGGTGGGAGGATCACATGAGCCCAGGAGTT 2294
Query 802 -------------------------------------------------------------------------- 801
Sbjct 2295 CGAGATTGCAGTGAACTGTGATTGCACCACTGTACTCCAGTCTGGGTGACAGAGAGAGACCCTGTCTAAACAAA 2368
Query 802 -------------------------------------------------------------------------- 801
Sbjct 2369 AAAGAGAGAGAGAGAGAGAGAGAGGAGGCAGAGTGAGATAACTGAATAGAAGCCTCCACTGATTGTCCTCCCTG 2442
Query 802 --------------------------------------------------------------GCTTTAAGGAAG 813
||||||||||||
Sbjct 2443 CAGTAGCACCAAATTTGACAACTGTCTACACAGAAAAGTACCTTCATGAGAGCCAAAAATCAGCTTTAAGGAAG 2516
Query 814 CCTCCTATTTCAGTTTCTCAACATGAAAGTCATCAAGCAATCTCCCATCTTCCAACTGGACAACCTCTCTCCCC 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 CCTCCTATTTCAGTTTCTCAACATGAAAGTCATCAAGCAATCTCCCATCTTCCAACTGGACAACCTCTCTCCCC 2590
Query 888 AAATATGCCTCCAGATTCACACATAAACCACAATGGAAACCCCGGTACTTCAAAACAGAATCCTTCCAGTCCTC 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 AAATATGCCTCCAGATTCACACATAAACCACAATGGAAACCCCGGTACTTCAAAACAGAATCCTTCCAGTCCTC 2664
Query 962 TTCAGCGTTTAATTCCAGGCTCAAACTTGGACAGTGAACCCAGAATTCAAACAGATATACTAAAGCAGGCTACC 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 TTCAGCGTTTAATTCCAGGCTCAAACTTGGACAGTGAACCCAGAATTCAAACAGATATACTAAAGCAGGCTACC 2738
Query 1036 AAGGACAGAGTCAGTGATTTCCATAAATTGAAGCAAAGCCGATTCTTTGATGA--------------AAATGAA 1095
||||||||||||||||||||||||||||||||||||| .|||||| |||||.|
Sbjct 2739 AAGGACAGAGTCAGTGATTTCCATAAATTGAAGCAAA---------ATGATGAAGAACGAGAGCTTCAAATGGA 2803
Query 1096 TCC---------------------------------CCTGTTGA-TCCGCA--GCATG---------------- 1117
||| ||| ||.| |||..| |.|||
Sbjct 2804 TCCTGCAGACTATGGAAAGCAACATTTCAATGATGTCCT-TTAAGTCCTAAAGGAATGCTTCAGAAAACCTAAA 2876
Query 1118 --GCTCTAAA-------------------------CTGGC---------------------------------- 1130
|||.|||| |||.|
Sbjct 2877 GTGCTGTAAAATGAAATCATTCTACTTTGTCCTTTCTGACTTTTGTTGTAAAGACGAATTGTATCAGTTGTAAA 2950
Query 1131 --------------GGATTA-----------TAATG--GGGATG-------------ATGGTAACGT------- 1157
|.|||| ||||| ||.||| |||..|||.|
Sbjct 2951 GATACATTGAGATAGAATTAAGGAAAAACTTTAATGAAGGAATGTACCCATGTACATATGTGAACTTTTTCATA 3024
Query 1158 -----------AGG------------TGAGTATGAGGCAGACAAGC-------------------------AGG 1183
||| ||..|||||..|||..|||| |.|
Sbjct 3025 TTGTATTATCAAGGTATAGACTTTTTTGGTTATGATACAGTTAAGCCAAAAACAGCTAATCTTTGCATCTAAAG 3098
Query 1184 C--------------------------TGAGCTGGCTT------ACAATGAG-------GAAGAAGATGGTGAT 1218
| |||||.|.||| ||||..|| |.|.||.||.||
Sbjct 3099 CAAACTAATGTATATTTCACATTTTATTGAGCCGACTTATTTCCACAAATAGATAAACAGGACAAAATAGT--- 3169
Query 1219 GGTGGAGAGG-AAGACGTCCAAGGTGAGCGTGGGCCTGGCCTCCATGCTATAACCA------------------ 1273
||.|.||| .|.|.|| |||.|.|| |||||||
Sbjct 3170 --TGTACAGGTTATATGT--------------GGCATAGC---------ATAACCACAGTAAGAACAGAACAGA 3218
Query 1274 --------TGAAACCCAC--------CTCTAAGTTTTTTGGT-------------------------------- 1299
.|||| || ||||||.|.||||..|
Sbjct 3219 TATTCAGCAGAAA---ACTTTTTATACTCTAATTCTTTTTTTTTTTTTTTTTGAGACAGAGTTTTAGTCTTGTT 3289
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 3290 TCCCAGGCTGGAGTGCAATGGCACAATCTTGGCTCACTGCAACCTCCGCCTCCTGGGTTCAGGCAATTTTCCTG 3363
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 3364 CCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACCCACCACCATGCCCAGCTAATTTTTGTATTTTTAATAGAG 3437
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 3438 AGCTAATAATTGTATATTTAATAAAGACGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAG 3511
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 3512 GTGATCCTCCTGCATTGGCCTCCCAAAGTGCTGGAATTCCAGGCATGAGCCACTGCGCCCAGTCTACACACTAA 3585
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 3586 TTCTTGTTAGCCCAACAGCTGTTCTGTTCTATCTACCCCTCATTTCACGCTCAAGGAGTCATACCTAGAATAGT 3659
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 3660 TACACACAAGAGGGAAACTGGAAGCCAAACACTGTACAGTATTGTGTAGAAAGTCACCTCCCTACTCCTTTTAT 3733
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 3734 TTTACATGAGTGCTGATGTGTTTTGGCAGATGAGCTTTCAGCTGAGGCCTGATGGAAATTGAGATAACCTGCAA 3807
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 3808 AGACATAACAGTATTTATGAGTTATATCTTAGTTCTTGAAATTGTGGAATGCATGATTGACAATATATTTTTAA 3881
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 3882 TTTTTATTTTTTCAAGTAATACCAGTACTGTTTAACTATAGCCAGAACTGGCTAAAATTTTTATATTTTCAGAG 3955
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 3956 TTGAAGTTGGTGAAGACATTCATGATTTAAACACCAGATCCTGAAAGGGGTTAAATCTACTTTGAAATGAATCT 4029
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 4030 GCAATCAGTATTTCAAAGCTTTTCTGGTAATTTTAGTGATCTTATTTGATTAGACTTTTTCAGAAGTACTAAAT 4103
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 4104 AAGGAATTTTAACAGGTTTTTATTAATGCACAGATAAATAGAAGTACAGTGAGGTCTATAGCCATTTTATTAAA 4177
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 4178 ATAGCTTAAAAGTTTGTAAAAAAATGAATCTTTGTAATTACTTAATATGTTAGTTAAGAACCCGTCAAGCTTAT 4251
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 4252 ATTTGCTAGACTTACAAATTATTTTAAATGCATTTATCTTTTTTGACACTATTCAGTGGAATGTGTAAGCTAGC 4325
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 4326 TAATTCTTGTTTTCTGATTTAAAGCACTTTTAAATCTTATCCTGCCCCCTAAAAACAAAAGGTTTTGATCACAA 4399
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 4400 GGGGAAATTTAAGATTGTTAACCCTGTTTTTCAGAAGGGCTACTGTTAATTGCACATAAACATGAAATGTGTTT 4473
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 4474 TCCCCTGTGTACTAACACATTCTAGGCAAAATTCAAACTTATAGTGGTAAAGAAACAGGTTGTTCACTTGCTGA 4547
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 4548 GGTGCAAAAATTCTTAAGACTTCTGTTTGAAATTGCTCAATGACTAGGAAAAGATGTAGTAGTTTACTAAAATT 4621
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 4622 GTTTTTCTACCATATCAAATTAAACAATTCATGCCTTTATAGGGTCAGGCCTACAATGAATAGGTATGGTGGTT 4695
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 4696 TCACAGAATTTTAAAATAGAGTTAAAGGGAAGTGATGTACATTTCGGGGGCATTAGGGTAGGGAGATGAATCAA 4769
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 4770 AAAATACCCCTAGTAATGCTTTATATTTTAATACTGCAAAAGCTTTACAAATGGAAACCATGCAATTACCTGCC 4843
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 4844 TTAGTTCTTTTGTCATAAAAACAATCACTTGGTTGGTTGTATTGTAGCTATTACTTATACAGCAACATTTCTTC 4917
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 4918 AATTAGCAGTCTAGACATTTTATAAACAGAAATCTTGGACCAATTGATAATATTTCTGACTGTATTAATATTTT 4991
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 4992 AGTGCTATAAAATACTATGTGAATCTCTTAAAAATCTGACATTTTACAGTCTGTATTAGACATACTGTTTTTAT 5065
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 5066 AATGTTTTACTTCTGCCTTAAGATTTAGGTTTTTTAAATGTATTTTTGCCCTGAATTAAGTGTTAATTTGATGG 5139
Query 1300 ----------------------------------------------------------- 1299
Sbjct 5140 AAACTCTGCTTTTAAAATCATCATTTACTGGGTTCTAATAAATTAAAAATTAAACTTGT 5198
