Construct: ORF ccsbBroad304_13019

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012952.1_s304c1, BRDN0000403950
Derived from:
ccsbBroadEn_13019
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CASC4 (113201)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13019
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 113201 CASC4 cancer susceptibility 4 NM_138423.4 96.7% 94.3% (many diffs)
2 human 113201 CASC4 cancer susceptibility 4 NM_177974.3 86.1% 82.8% (many diffs)
3 human 113201 CASC4 cancer susceptibility 4 XM_017021880.2 61.8% 61.4% (many diffs)
4 human 113201 CASC4 cancer susceptibility 4 NR_157849.2 23.2% (many diffs)
5 mouse 319996 Casc4 cancer susceptibility candi... NM_001205369.1 87.7% 84.5% (many diffs)
6 mouse 319996 Casc4 cancer susceptibility candi... NM_177054.5 81.2% 78.4% (many diffs)
7 mouse 319996 Casc4 cancer susceptibility candi... NM_001205370.1 77.5% 73% (many diffs)
8 mouse 319996 Casc4 cancer susceptibility candi... NM_199038.3 70.9% 66.8% (many diffs)
9 mouse 319996 Casc4 cancer susceptibility candi... NM_001205371.1 62.5% 58% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1365
ORF length:
1299
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggt gggtttcggg gccaaccggc gggctggccg cctgccctct ctcgtgctgg
121tggtgctgct ggtggtgatc gtcgtcctcg ccttcaacta ctggagcatc tcctcccgcc
181acgtcctgct tcaggaggag gtggccgagc tgcagggcca ggtccagcgc accgaagtgg
241cccgcgggcg gctggaaaag cgcaattcgg acctcttgct gttggtggac acgcacaaga
301aacagatcga ccagaaggag gccgactacg gccgcctcag cagccggctg caggccagag
361agggcctcgg gaagagatgc gaggatgaca aggttaaact acagaacaac atatcgtatc
421agatggcaga catacatcat ttaaaggagc aacttgctga gcttcgtcag gaatttcttc
481gacaagaaga ccagcttcag gactatagga agaacaatac ttaccttgtg aagaggttag
541aatatgaaag ttttcagtgt ggacagcaga tgaaggaatt gagagcacag catgaagaaa
601atattaaaaa gttagcagac cagtttttag aggaacaaaa gcaagagacc caaaagattc
661aatcaaatga tggaaaggaa ttggatataa acaatcaagt agtacctaaa aatattccaa
721aagtagctga gaatgttgca gataagaatg aagaaccctc aagcaatcat attccacatg
781ggaaagaaca aatcaaaaga ggtggtgatg cagggatgcc tggaatagaa gagaatgacc
841tagcaaaagt tgatgatctt ccccctgctt taaggaagcc tcctatttca gtttctcaac
901atgaaagtca tcaagcaatc tcccatcttc caactggaca acctctctcc ccaaatatgc
961ctccagattc acacataaac cacaatggaa accccggtac ttcaaaacag aatccttcca
1021gtcctcttca gcgtttaatt ccaggctcaa acttggacag tgaacccaga attcaaacag
1081atatactaaa gcaggctacc aaggacagag tcagtgattt ccataaattg aagcaaagcc
1141gattctttga tgaaaatgaa tcccctgttg atccgcagca tggctctaaa ctggcggatt
1201ataatgggga tgatggtaac gtaggtgagt atgaggcaga caagcaggct gagctggctt
1261acaatgagga agaagatggt gatggtggag aggaagacgt ccaaggtgag cgtgggcctg
1321gcctccatgc tataaccatg aaacccacct ctaagttttt tggttgccca actttcttgt
1381acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
1441gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

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