Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13034
- Subject:
- XM_024450773.1
- Aligned Length:
- 5048
- Identities:
- 2201
- Gaps:
- 2596
Alignment
Query 1 ------------------------------------ATGTCTTGGCTGCGTTTCTGGGGCCCATGGCCCCTCCT 38
|||||..|||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCTGCTCAGTGCCCGGCACTAGTGTGTGTCATGTCCCGGCTGCGTTTCTGGGGCCCATGGCCCCTCCT 74
Query 39 TACGTGGCAACTATTGTCTTTACTAGTCAAGGAGGCTCAGCCTCTGGTGTGGGTCAAGGACCCGCTCCAGCTGA 112
||.||||||||||||||...|||||||.|||||||||||||||||||.||||||||||||||||||||||||.|
Sbjct 75 TATGTGGCAACTATTGTGGCTACTAGTTAAGGAGGCTCAGCCTCTGGAGTGGGTCAAGGACCCGCTCCAGCTCA 148
Query 113 CCTCTAACCCCCTGGGGCCACCTGAGCCCTGGTCTTCCCGCTCCTCCCATCTCCCATGGGAATCTCCCCATGCA 186
|||||||.|||||||||||.|||||..||||||||||||.||||||||||.|||||.||||||||||||||||.
Sbjct 149 CCTCTAATCCCCTGGGGCCGCCTGACTCCTGGTCTTCCCACTCCTCCCATTTCCCACGGGAATCTCCCCATGCG 222
Query 187 CCTGCTCCCCCAGCAGCCCCGGGGGACTTTGATTACCTGGGGCCCTCTGCTTCTTCGCAGATGTCAGCCCTGCC 260
|||.|||.||||||||.||||.|||||||||||.|||||||||||||||||||.||..|||||.||||||..||
Sbjct 223 CCTACTCTCCCAGCAGACCCGTGGGACTTTGATCACCTGGGGCCCTCTGCTTCCTCAGAGATGCCAGCCCCACC 296
Query 261 TCAGGAACCAACTGAAAATTTGGCTCCATTCCTGAAGGAATTGGATTCAGCTGGAGAGCTGCCCCTGGGGCCAG 334
.||||||.|.|||||||||||||.||||||||||.|....|.|||||||||||||||||.||||||||.|||||
Sbjct 297 CCAGGAATCGACTGAAAATTTGGTTCCATTCCTGGACACCTGGGATTCAGCTGGAGAGCAGCCCCTGGAGCCAG 370
Query 335 AGCCGTTCTTGGCTGCACATCAGGACTTAAATGACAAGCGGACTCCAGAAGAAAGGCTCCCAGAGGTGGTTCCG 408
|||.||||||||||.||||.|||||.|||||.|||||||.||.||||.|.|||||.|||||
Sbjct 371 AGCAGTTCTTGGCTTCACAGCAGGATTTAAAGGACAAGCTGAGTCCACAGGAAAGACTCCC------------- 431
Query 409 CTTCTCAACCGGGATCAGAACCAGGCCCTAGTTCAGCTTCCTCGCCTCAAGTGGGTTCAAACTACAGATCTAGA 482
Sbjct 432 -------------------------------------------------------------------------- 431
Query 483 TCGGGCTGCAGGTCATCAGGCAGATGAAATACTTGTTCCACTAGACAGTAAGGTTTCAAGACCAACCAAATTTG 556
Sbjct 432 -------------------------------------------------------------------------- 431
Query 557 TTGTTTCGCCCAAGAACCTGAAGAAAGATCTAGCTGAACGTTGGAGCCTTCCTGAGATTGTTGGGATTCCACAC 630
|||||||||||||||.|||||||||||||.||||.|.||||||||||||.||||||||.||||.|||.|||.|
Sbjct 432 -TGTTTCGCCCAAGAAGCTGAAGAAAGATCCAGCTCAGCGTTGGAGCCTTGCTGAGATTATTGGAATTACACGC 504
Query 631 CAATTATCCAAACCTCAGCGTCAGAAACAGACTTTGCCAG-ATGATTATTTGAGTATGGACACACTGTATCCCG 703
||||||||||.|||||||.||||||||||||||||| ||| ||||.||||..||||..||.||||.||||||||
Sbjct 505 CAATTATCCACACCTCAGAGTCAGAAACAGACTTTG-CAGAATGAATATTCCAGTACAGATACACCGTATCCCG 577
Query 704 GCAGCCTACCTCCAGAACTCCGGGTGAACGCAGATGAGCCTCCAGGGCCTCCTGAGCAAGTTGGACTTTCTCAA 777
|.|||||.||||||||||||||||||||..|||||||||||||||||||..|||||||||||||||.|||||||
Sbjct 578 GTAGCCTGCCTCCAGAACTCCGGGTGAAGTCAGATGAGCCTCCAGGGCCCTCTGAGCAAGTTGGACCTTCTCAA 651
Query 778 TTCCATCTAGAGCCCAAAAGTCAAAATCCAGAGACCCTTGAAGACATCCAGTCCTCTTCACTCCAGGAAGAAGC 851
|||||||||||||||.|||.||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 652 TTCCATCTAGAGCCCGAAACTCAAAATCCAGAGACCCTTGAAGACATCCAGTCCTCTTCACTCCAGCAAGAAGC 725
Query 852 CCCAGCGCAGCTTCTACAGCTCCCTCAGGAGGTAGAAC---CTTCAACCCAGCAGGAGGCCCCAGCTCTGCCTC 922
||||||.|||||||.||||||||.| ||||.||||| ||||||..|||||||||||||||||||||||||
Sbjct 726 CCCAGCACAGCTTCCACAGCTCCTT---GAGGAAGAACCTTCTTCAATGCAGCAGGAGGCCCCAGCTCTGCCTC 796
Query 923 CAGAGTCCTCTATGGAGAGTCTAGCTCAAACTCCACTGAATCATGAAGTGACAGTTCAACCTCCAGGTGAGGAT 996
|||||||||||||||||||||| |||||.||.|||||||||.|||.|||||||||||||||||||||||
Sbjct 797 CAGAGTCCTCTATGGAGAGTCT------AACTCTACCGAATCATGAGGTGTCAGTTCAACCTCCAGGTGAGGAT 864
Query 997 CAAGCTCATTATAATTTGCCCAAGTTTACAGTCAAACCTGCAGATGTGGAGGTTACCATGACTTCAGAGCCTAA 1070
||||||.|||||.|.||||||||..|||||||.||||||||||||||||||||||||||.|||||||||||||.
Sbjct 865 CAAGCTTATTATCACTTGCCCAACATTACAGTTAAACCTGCAGATGTGGAGGTTACCATAACTTCAGAGCCTAC 938
Query 1071 AAATGAGACAGAATCTACCCAAGCCCAGCAGGAGGCCCCAATTCAGCCTCCCGAGGAGGCGGAACCTT------ 1138
.|||||||||||||||.|||||||||||||||||.|||||||||||..|||.|||||||.||||||||
Sbjct 939 CAATGAGACAGAATCTTCCCAAGCCCAGCAGGAGACCCCAATTCAGTTTCCAGAGGAGGTGGAACCTTCTGCAA 1012
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1013 CCCAACAGGAGGCCCCAATTGAGCCTCCAGTTCCTCCTATGGAGCATGAACTTTCCATCAGTGAGCAGCAGCAG 1086
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1087 CCAGTTCAGCCTTCTGAGTCTCCTAGGGAGGTCGAATCTTCTCCGACCCAGCAGGAGACCCCAGGTCAGCCTCC 1160
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1161 AGAACATCATGAAGTCACAGTTTCACCTCCAGGTCACCATCAAACTCATCATTTAGCTTCACCCAGTGTCTCTG 1234
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1235 TGAAGCCTCCAGACGTGCAGCTCACCATAGCAGCAGAGCCTAGTGCAGAGGTGGGAACTTCTCTAGTCCACCAG 1308
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1309 GAGGCTACAACTCGGCTCTCAGGGTCAGGTAATGATGTAGAACCTCCCGCCATCCAGCACGGGGGCCCACCTCT 1382
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1383 GCTTCCAGAGTCATCAGAAGAAGCTGGACCTTTAGCAGTTCAACAGGAGACTTCATTTCAATCTCCGGAACCTA 1456
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1457 TTAATAATGAGAACCCCTCTCCAACCCAGCAGGAGGCTGCAGCTGAGCATCCACAGACCGCTGAGGAGGGTGAG 1530
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1531 TCTTCCCTAACCCATCAGGAGGCCCCAGCTCAGACTCCAGAGTTCCCTAATGTAGTTGTAGCTCAACCTCCAGA 1604
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1605 GCATTCACACCTGACTCAAGCCACAGTTCAACCTTTGGATCTGGGGTTTACCATCACTCCAGAATCCAAGACAG 1678
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1679 AGGTTGAACTTTCTCCAACCATGAAGGAGACCCCAACTCAGCCTCCTAAGAAAGTTGTACCCCAACTTCGAGTA 1752
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1753 TATCAAGGGGTAACAAATCCAACACCAGGTCAGGATCAAGCTCAGCATCCAGTGTCACCCAGCGTTACAGTTCA 1826
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1827 ACTTTTGGACCTGGGACTTACCATCACTCCAGAACCTACTACGGAGGTTGGACATTCTACACCCCCGAAGAGGA 1900
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1901 CTATAGTTTCTCCAAAGCATCCTGAGGTGACACTTCCACATCCAGACCAGGTTCAGACTCAGCATTCACACCTG 1974
Query 1139 ----------------------------------------------------------------------CTTC 1142
||||
Sbjct 1975 ACTCGAGCCACAGTTCAACCTTTGGACCTGGGGTTTACCATCACTCCAAAATCCATGACAGAGGTTGAACCTTC 2048
Query 1143 TACAGCCCTGAGGACTACAGATCCTCCTCCAGAACACCCTGAGGTGACACTTCCACCTTCAGACAAGGGTCAGG 1216
|||||||||||.||||||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 2049 TACAGCCCTGATGACTACAGCTCCTCCTCCAGGACACCCTGAGGTGACACTTCCACCTTCAGACAAGGGTCAGG 2122
Query 1217 CTCAGCATTCACACCTGACTGAAGCCACAGTTCAACCTCTGGACCTGGAGCTTAGCATAACTACAGAGCCTACT 1290
||||||||||||||||||||.|||||||.|||||||||||||||||||||||||.||||||||||.|.||||||
Sbjct 2123 CTCAGCATTCACACCTGACTCAAGCCACCGTTCAACCTCTGGACCTGGAGCTTACCATAACTACAAAACCTACT 2196
Query 1291 ACAGAGGTTAAACCGTCTCCAACCACGGAGGAAACCTCAGCTCAGCCTCCAGACCCGGGGCTTGCCATAACTCC 1364
||||||||||||||.|||||||||||||||||.||||||.|||||||||||||||.|||.||||||||.|.|||
Sbjct 2197 ACAGAGGTTAAACCATCTCCAACCACGGAGGAGACCTCAACTCAGCCTCCAGACCTGGGACTTGCCATCATTCC 2270
Query 1365 AGAACCCACTACAGAGATTGGACATTCCACAGCCCTGGAGAAGACTAGAGCTCCTCATCCAGACCAGGTTCAGA 1438
|||||||||||||||||.|.|||||||.|||||||||||||||||||.||||||||.||||||||.||||||||
Sbjct 2271 AGAACCCACTACAGAGACTAGACATTCTACAGCCCTGGAGAAGACTACAGCTCCTCGTCCAGACCGGGTTCAGA 2344
Query 1439 CTCTGCATCGAAGCCTGACTGAAGTCACAGGTCCACCTACAAAGTTAGAATCTTCGCAGGATTCATTGGTGCAG 1512
||||||||||||||||||||||||||||||||||||||||..|..|||||.||.|.|||||||||.||||||||
Sbjct 2345 CTCTGCATCGAAGCCTGACTGAAGTCACAGGTCCACCTACTGAACTAGAACCTGCTCAGGATTCACTGGTGCAG 2418
Query 1513 TCTGA------------------------AACTGCACCAGAGGAACAGAAGGCCTCCACAAGCACCAACATATG 1562
||||| ||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 2419 TCTGAAAGTTACACCCAAAATAAGGCTTTAACTGCACCAGAGGAACACAAGGCCTCCACAAGCACCAACATATG 2492
Query 1563 TGAGCTCTGCACCTGCGGAGATGAGACTCTGTCATGTGTTGGTCTCAGCCCAAAGCAGAGGCTCCGCCAAGTGC 1636
|||||||||.||||||||||||||||...||||||||.|||.|||||.||||.|||||||||||||||||||||
Sbjct 2493 TGAGCTCTGTACCTGCGGAGATGAGATGTTGTCATGTATTGATCTCAACCCAGAGCAGAGGCTCCGCCAAGTGC 2566
Query 1637 CTGTGCCAGAGCCCGACACCTACAATGGCATCTTCACCACCTTAAATTTCCAAGGAAACTATATTTCATACCTT 1710
||||||||||||||.|||||.|||||||||.||||||||.|||||||||||||||||||||||||||.|||.||
Sbjct 2567 CTGTGCCAGAGCCCAACACCCACAATGGCACCTTCACCATCTTAAATTTCCAAGGAAACTATATTTCTTACATT 2640
Query 1711 GATGGAAATGTATGGAAAGCATACAGTTGGACCGAGAAACTAATTCTCAGTGAAAATTATTTGACTGAATTACC 1784
||||||||||||||||||||||||||||||||||||||||||||||||||.||||||.|.|||||||||||||.
Sbjct 2641 GATGGAAATGTATGGAAAGCATACAGTTGGACCGAGAAACTAATTCTCAGAGAAAATAACTTGACTGAATTACA 2714
Query 1785 TAAGGATTCATTTGAAGGCCTGCTATACCTCCAGTAT------------------------------------- 1821
.|||||||||||||||||||||||||.||||||||||
Sbjct 2715 CAAGGATTCATTTGAAGGCCTGCTATCCCTCCAGTATTTAGATTTATCCTGCAATAAAATACAGTCTATTGAAA 2788
Query 1822 -------------------------------------------------------------------------- 1821
Sbjct 2789 GACATACATTTGAACCACTACCATTTTTGAAGTTTATAAATCTTAGTTGCAATGTAATTACAGAACTCAGCTTT 2862
Query 1822 ------------------------------------------TTAATTCTCAATCGCAATCCTCTGACTACTGT 1853
|||||||||||||.||||||||||||.|||||
Sbjct 2863 GGAACATTTCAGGCCTGGCACGGAATGCAGTTTTTACATAAGTTAATTCTCAATCACAATCCTCTGACAACTGT 2936
Query 1854 CGAAGATCCATATCTCTTTGAACTGCCGGCATTAAAATATCTAGACATGGGAACAACACACATCACACTTACAA 1927
.||||||||.|||||||||.||.||||.|||||||||||||||||||||||||||||.|...||.|||||||||
Sbjct 2937 TGAAGATCCGTATCTCTTTAAATTGCCAGCATTAAAATATCTAGACATGGGAACAACGCTAGTCCCACTTACAA 3010
Query 1928 CACTTAAGAACATTCTCACGATGACTGTTGAACTGGAAAAACTGATCTTACCTAGCCATATGGCCTGCTGCCTC 2001
||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3011 CACTTAAGAACATTCTCATGATGACTGTTGAACTGGAAAAACTGATCTTACCTAGCCATATGGCCTGCTGCCTC 3084
Query 2002 TGCCAATTTAAAAATAGCATTGAGGCTGTCTGCAAGACAGTCAAGCTGCATTGCAACACTGCATGTCTGACTAA 2075
||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||.||||||||||||.||
Sbjct 3085 TGCCAATTTAAAAACAGCATTGAGGCTGTCTGCAAGACAGTCAAGCTGCATTGCAACAGTGCATGTCTGACAAA 3158
Query 2076 CAGCATACATTGTCCTGAAGAAGCATCTGTAGGGAATCCAGAAGGAGCGTTCATGAAGATGTTACAAGCCCGGA 2149
||.||.|||||||||||||||||||||.||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 3159 CACCACACATTGTCCTGAAGAAGCATCGGTAGGGAATCCAGAAGGAGCGTTCATGAAGGTGTTACAAGCCCGGA 3232
Query 2150 AGCAGCACATGAGCACTCAGCTGACTATTGAGTCGGAGGCGCCCTCAGACAGCAGTGGCATCAACTTGTCAGGC 2223
||.|..|||..||||||.||||||.|.|||||.|.||||.||||||||||||||||||||||||||||||||||
Sbjct 3233 AGAACTACACAAGCACTGAGCTGATTGTTGAGCCAGAGGAGCCCTCAGACAGCAGTGGCATCAACTTGTCAGGC 3306
Query 2224 TTTGGG-------------------------------------------------------------------- 2229
||||||
Sbjct 3307 TTTGGGAGTGAGCAGCTAGACACCAATGACGAGAGTGATTTTATCAGTACACTAAGTTACATCTTGCCTTATTT 3380
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 3381 CTCAGCGGTAAACCTAGATGTGAAATCACTGTTACTACCGTTCATTAAACTGCCAACCACAGGAAACAGCCTGG 3454
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 3455 CAAAGATTCAAACTGTAGGCCAAAACCGGCAGAGAGTGAAGAGAGTCCTCATGGGCCCAAGGAGCATCCAGAAA 3528
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 3529 AGGCACTTCAAAGAGGTAGGAAGGCAGAGCATCAGGAGGGAACAGGGTGCCCAGGCATCTGTGGAGAACGCTGC 3602
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 3603 CGAAGAAAAAAGGCTCGGGAGTCCAGCCCCAAGGGAGGTGGAACAGCCCCACACACAGCAGGGGCCTGAGAAGT 3676
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 3677 TAGCGGGAAACGCCGTCTACACCAAGCCTTCCTTCACCCAAGAGCATAAGGCAGCAGTCTCTGTGCTGAAACCC 3750
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 3751 TTCTCCAAGGGCGCGCCTTCTACCTCCAGCCCTGCAAAAGCCCTACCACAGGTGAGAGACAGATGGAAAGACTT 3824
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 3825 AACCCACGCTATTTCCATTTTAGAAAGTGCAAAGGCTAGAGTTACAAATACGAAGACGTCTAAACCAATCGTAC 3898
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 3899 ATGCCAGAAAAAAATACCGCTTTCACAAAACTCGCTCCCACGTGACCCACAGAACACCCAAAGTCAAAAAGAGT 3972
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 3973 CCAAAGGTCAGAAAGAAAAGTTATCTGAGTAGACTGATGCTCGCAAACAGGCTTCCATTCTCTGCAGCGAAGAG 4046
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 4047 CCTCATAAATTCCCCTTCACAAGGGGCTTTTTCATCCTTAGGAGACCTGAGTCCTCAAGAAAACCCTTTTCTGG 4120
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 4121 AAGTATCTGCTCCTTCAGAACATTTTATAGAAAACAATAATACAAAACACACAACTGCAAGAAATGCCTTTGAA 4194
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 4195 GAAAATGATTTTATGGAAAACACTAACATGCCAGAAGGAACCATCTCTGAAAACACAAACTACAATCATCCTCA 4268
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 4269 TGAGGCAGATTCCGCTGGGACTGCATTCAACTTAGGGCCAACTGTTAAACAAACTGAGACAAAATGGGAATACA 4342
Query 2230 -----------------------------------------------------------------GGTGATCAG 2238
|||||||||
Sbjct 4343 ACAACGTGGGCACTGACCTGTCCCCCGAGCCCAAAAGCTTCAATTACCCATTGCTCTCGTCCCCAGGTGATCAG 4416
Query 2239 CTTGAAATTCAGCTAACCGAGCAGCTACGGTCCCTCATCCCCAACGAGGATGTGAGAAAGTTCATGTCTCATGT 2312
.|||||||||||||||||.|||||||||.||||||.|||||||||.|..|||||||||.|.||||..|||||||
Sbjct 4417 TTTGAAATTCAGCTAACCCAGCAGCTACAGTCCCTTATCCCCAACAACAATGTGAGAAGGCTCATTGCTCATGT 4490
Query 2313 TATCCGGACCTTGAAAATGGAATGTTCAGAAACACATGTGCAAGGGAGCTGTGCCAAGCTCATGTTGCGAACAG 2386
|||||||||||||||.|||||.||.||.|...|.||||||||||.||.|||||||||||||||.|...|.||||
Sbjct 4491 TATCCGGACCTTGAAGATGGACTGCTCTGGGGCCCATGTGCAAGTGACCTGTGCCAAGCTCATCTCCAGGACAG 4564
Query 2387 GCCTCCTGATGAAGCTTCTCAGCGAGCAGCAGGAAGCAAAGGCATTGAATGTAGAATGGGATACGGACCAACAA 2460
|||.||||||||||||||||||.|.|||||||||||.||||||||..||..||||||||||||||||||||...
Sbjct 4565 GCCACCTGATGAAGCTTCTCAGTGGGCAGCAGGAAGTAAAGGCATCCAAGATAGAATGGGATACGGACCAATGG 4638
Query 2461 AA-------AACAAATTATATTAATGAGAACATGGAA---CAGAATGAACAGAAAGAGCAGAAGTCAAGTGAGC 2524
|| ||| ||.||||||||||.||..||| ||||.||||||||||| |||||||...|||||
Sbjct 4639 AAGATTGAGAAC----TACATTAATGAGAGCACAGAAGCCCAGAGTGAACAGAAAG---AGAAGTCGCTTGAGC 4705
Query 2525 TCATGAAAGAAGTTCCAGGAGATGACTATAAGAACAAACTCATCTTCGCAATATCTGTGACTGTAATACTAATA 2598
|||..|||||||||||||||.|||.|||||...|||||||||||||.|||.||..|||.||||.||||||||..
Sbjct 4706 TCAAAAAAGAAGTTCCAGGATATGGCTATACTGACAAACTCATCTTGGCATTAATTGTTACTGGAATACTAACG 4779
Query 2599 ATTTTGATTATAATTTTTTGTCTTATAGAGGTGAATTCACATAAAAGGGCATCAGAAAAATACAAAGACAACCC 2672
||||||||||||.||||.||.||.||.|.|||.
Sbjct 4780 ATTTTGATTATACTTTTCTGCCTCATTGTGGTT----------------------------------------- 4812
Query 2673 ATCAATATCAGGAGCC 2688
Sbjct 4813 ---------------- 4812