Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13034
- Subject:
- XM_024450775.1
- Aligned Length:
- 3790
- Identities:
- 1566
- Gaps:
- 2063
Alignment
Query 1 ------------------------------------ATGTCTTGGCTGCGTTTCTGGGGCCCATGGCCCCTCCT 38
|||||..|||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCTGCTCAGTGCCCGGCACTAGTGTGTGTCATGTCCCGGCTGCGTTTCTGGGGCCCATGGCCCCTCCT 74
Query 39 TACGTGGCAACTATTGTCTTTACTAGTCAAGGAGGCTCAGCCTCTGGTGTGGGTCAAGGACCCGCTCCAGCTGA 112
||.||||||||||||||...|||||||.|||||||||||||||||||.||||||||||||||||||||||||.|
Sbjct 75 TATGTGGCAACTATTGTGGCTACTAGTTAAGGAGGCTCAGCCTCTGGAGTGGGTCAAGGACCCGCTCCAGCTCA 148
Query 113 CCTCTAACCCCCTGGGGCCACCTGAGCCCTGGTCTTCCCGCTCCTCCCATCTCCCATGGGAATCTCCCCATGCA 186
|||||||.|||||||||||.|||||..||||||||||||.||||||||||.|||||.||||||||||||||||.
Sbjct 149 CCTCTAATCCCCTGGGGCCGCCTGACTCCTGGTCTTCCCACTCCTCCCATTTCCCACGGGAATCTCCCCATGCG 222
Query 187 CCTGCTCCCCCAGCAGCCCCGGGGGACTTTGATTACCTGGGGCCCTCTGCTTCTTCGCAGATGTCAGCCCTGCC 260
|||.|||.||||||||.||||.|||||||||||.|||||||||||||||||||.||..|||||.||||||..||
Sbjct 223 CCTACTCTCCCAGCAGACCCGTGGGACTTTGATCACCTGGGGCCCTCTGCTTCCTCAGAGATGCCAGCCCCACC 296
Query 261 TCAGGAACCAACTGAAAATTTGGCTCCATTCCTGAAGGAATTGGATTCAGCTGGAGAGCTGCCCCTGGGGCCAG 334
.||||||.|.|||||||||||||.||||||||||.|....|.|||||||||||||||||.||||||||.|||||
Sbjct 297 CCAGGAATCGACTGAAAATTTGGTTCCATTCCTGGACACCTGGGATTCAGCTGGAGAGCAGCCCCTGGAGCCAG 370
Query 335 AGCCGTTCTTGGCTGCACATCAGGACTTAAATGACAAGCGGACTCCAGAAGAAAGGCTCCCAGAGGTGGTTCCG 408
|||.||||||||||.||||.|||||.|||||.|||||||.||.||||.|.|||||.|||||
Sbjct 371 AGCAGTTCTTGGCTTCACAGCAGGATTTAAAGGACAAGCTGAGTCCACAGGAAAGACTCCC------------- 431
Query 409 CTTCTCAACCGGGATCAGAACCAGGCCCTAGTTCAGCTTCCTCGCCTCAAGTGGGTTCAAACTACAGATCTAGA 482
Sbjct 432 -------------------------------------------------------------------------- 431
Query 483 TCGGGCTGCAGGTCATCAGGCAGATGAAATACTTGTTCCACTAGACAGTAAGGTTTCAAGACCAACCAAATTTG 556
Sbjct 432 -------------------------------------------------------------------------- 431
Query 557 TTGTTTCGCCCAAGAACCTGAAGAAAGATCTAGCTGAACGTTGGAGCCTTCCTGAGATTGTTGGGATTCCACAC 630
|||||||||||||||.|||||||||||||.||||.|.||||||||||||.||||||||.||||.|||.|||.|
Sbjct 432 -TGTTTCGCCCAAGAAGCTGAAGAAAGATCCAGCTCAGCGTTGGAGCCTTGCTGAGATTATTGGAATTACACGC 504
Query 631 CAATTATCCAAACCTCAGCGTCAGAAACAGACTTTGCCAG-ATGATTATTTGAGTATGGACACACTGTATCCCG 703
||||||||||.|||||||.||||||||||||||||| ||| ||||.||||..||||..||.||||.||||||||
Sbjct 505 CAATTATCCACACCTCAGAGTCAGAAACAGACTTTG-CAGAATGAATATTCCAGTACAGATACACCGTATCCCG 577
Query 704 GCAGCCTACCTCCAGAACTCCGGGTGAACGCAGATGAGCCTCCAGGGCCTCCTGAGCAAGTTGGACTTTCTCAA 777
|.|||||.||||||||||||||||||||..|||||||||||||||||||..|||||||||||||||.|||||||
Sbjct 578 GTAGCCTGCCTCCAGAACTCCGGGTGAAGTCAGATGAGCCTCCAGGGCCCTCTGAGCAAGTTGGACCTTCTCAA 651
Query 778 TTCCATCTAGAGCCCAAAAGTCAAAATCCAGAGACCCTTGAAGACATCCAGTCCTCTTCACTCCAGGAAGAAGC 851
|||||||||||||||.|||.||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 652 TTCCATCTAGAGCCCGAAACTCAAAATCCAGAGACCCTTGAAGACATCCAGTCCTCTTCACTCCAGCAAGAAGC 725
Query 852 CCCAGCGCAGCTTCTACAGCTCCCTCAGGAGGTAGAAC---CTTCAACCCAGCAGGAGGCCCCAGCTCTGCCTC 922
||||||.|||||||.||||||||.| ||||.||||| ||||||..|||||||||||||||||||||||||
Sbjct 726 CCCAGCACAGCTTCCACAGCTCCTT---GAGGAAGAACCTTCTTCAATGCAGCAGGAGGCCCCAGCTCTGCCTC 796
Query 923 CAGAGTCCTCTATGGAGAGTCTAGCTCAAACTCCACTGAATCATGAAGTGACAGTTCAACCTCCAGGTGAGGAT 996
|||||||||||||||||||||| |||||.||.|||||||||.|||.|||||||||||||||||||||||
Sbjct 797 CAGAGTCCTCTATGGAGAGTCT------AACTCTACCGAATCATGAGGTGTCAGTTCAACCTCCAGGTGAGGAT 864
Query 997 CAAGCTCATTATAATTTGCCCAAGTTTACAGTCAAACCTGCAGATGTGGAGGTTACCATGACTTCAGAGCCTAA 1070
||||||.|||||.|.||||||||..|||||||.||||||||||||||||||||||||||.|||||||||||||.
Sbjct 865 CAAGCTTATTATCACTTGCCCAACATTACAGTTAAACCTGCAGATGTGGAGGTTACCATAACTTCAGAGCCTAC 938
Query 1071 AAATGAGACAGAATCTACCCAAGCCCAGCAGGAGGCCCCAATTCAGCCTCCCGAGGAGGCGGAACCTT------ 1138
.|||||||||||||||.|||||||||||||||||.|||||||||||..|||.|||||||.||||||||
Sbjct 939 CAATGAGACAGAATCTTCCCAAGCCCAGCAGGAGACCCCAATTCAGTTTCCAGAGGAGGTGGAACCTTCTGCAA 1012
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1013 CCCAACAGGAGGCCCCAATTGAGCCTCCAGTTCCTCCTATGGAGCATGAACTTTCCATCAGTGAGCAGCAGCAG 1086
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1087 CCAGTTCAGCCTTCTGAGTCTCCTAGGGAGGTCGAATCTTCTCCGACCCAGCAGGAGACCCCAGGTCAGCCTCC 1160
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1161 AGAACATCATGAAGTCACAGTTTCACCTCCAGGTCACCATCAAACTCATCATTTAGCTTCACCCAGTGTCTCTG 1234
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1235 TGAAGCCTCCAGACGTGCAGCTCACCATAGCAGCAGAGCCTAGTGCAGAGGTGGGAACTTCTCTAGTCCACCAG 1308
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1309 GAGGCTACAACTCGGCTCTCAGGGTCAGGTAATGATGTAGAACCTCCCGCCATCCAGCACGGGGGCCCACCTCT 1382
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1383 GCTTCCAGAGTCATCAGAAGAAGCTGGACCTTTAGCAGTTCAACAGGAGACTTCATTTCAATCTCCGGAACCTA 1456
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1457 TTAATAATGAGAACCCCTCTCCAACCCAGCAGGAGGCTGCAGCTGAGCATCCACAGACCGCTGAGGAGGGTGAG 1530
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1531 TCTTCCCTAACCCATCAGGAGGCCCCAGCTCAGACTCCAGAGTTCCCTAATGTAGTTGTAGCTCAACCTCCAGA 1604
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1605 GCATTCACACCTGACTCAAGCCACAGTTCAACCTTTGGATCTGGGGTTTACCATCACTCCAGAATCCAAGACAG 1678
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1679 AGGTTGAACTTTCTCCAACCATGAAGGAGACCCCAACTCAGCCTCCTAAGAAAGTTGTACCCCAACTTCGAGTA 1752
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1753 TATCAAGGGGTAACAAATCCAACACCAGGTCAGGATCAAGCTCAGCATCCAGTGTCACCCAGCGTTACAGTTCA 1826
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1827 ACTTTTGGACCTGGGACTTACCATCACTCCAGAACCTACTACGGAGGTTGGACATTCTACACCCCCGAAGAGGA 1900
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1901 CTATAGTTTCTCCAAAGCATCCTGAGGTGACACTTCCACATCCAGACCAGGTTCAGACTCAGCATTCACACCTG 1974
Query 1139 ----------------------------------------------------------------------CTTC 1142
||||
Sbjct 1975 ACTCGAGCCACAGTTCAACCTTTGGACCTGGGGTTTACCATCACTCCAAAATCCATGACAGAGGTTGAACCTTC 2048
Query 1143 TACAGCCCTGAGGACTACAGATCCTCCTCCAGAACACCCTGAGGTGACACTTCCACCTTCAGACAAGGGTCAGG 1216
|||||||||||.||||||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 2049 TACAGCCCTGATGACTACAGCTCCTCCTCCAGGACACCCTGAGGTGACACTTCCACCTTCAGACAAGGGTCAGG 2122
Query 1217 CTCAGCATTCACACCTGACTGAAGCCACAGTTCAACCTCTGGACCTGGAGCTTAGCATAACTACAGAGCCTACT 1290
||||||||||||||||||||.|||||||.|||||||||||||||||||||||||.||||||||||.|.||||||
Sbjct 2123 CTCAGCATTCACACCTGACTCAAGCCACCGTTCAACCTCTGGACCTGGAGCTTACCATAACTACAAAACCTACT 2196
Query 1291 ACAGAGGTTAAACCGTCTCCAACCACGGAGGAAACCTCAGCTCAGCCTCCAGACCCGGGGCTTGCCATAACTCC 1364
||||||||||||||.|||||||||||||||||.||||||.|||||||||||||||.|||.||||||||.|.|||
Sbjct 2197 ACAGAGGTTAAACCATCTCCAACCACGGAGGAGACCTCAACTCAGCCTCCAGACCTGGGACTTGCCATCATTCC 2270
Query 1365 AGAACCCACTACAGAGATTGGACATTCCACAGCCCTGGAGAAGACTAGAGCTCCTCATCCAGACCAGGTTCAGA 1438
|||||||||||||||||.|.|||||||.|||||||||||||||||||.||||||||.||||||||.||||||||
Sbjct 2271 AGAACCCACTACAGAGACTAGACATTCTACAGCCCTGGAGAAGACTACAGCTCCTCGTCCAGACCGGGTTCAGA 2344
Query 1439 CTCTGCATCGAAGCCTGACTGAAGTCACAGGTCCACCTACAAAGTTAGAATCTTCGCAGGATTCATTGGTGCAG 1512
||||||||||||||||||||||||||||||||||||||||..|..|||||.||.|.|||||||||.||||||||
Sbjct 2345 CTCTGCATCGAAGCCTGACTGAAGTCACAGGTCCACCTACTGAACTAGAACCTGCTCAGGATTCACTGGTGCAG 2418
Query 1513 TCTGA------------------------AACTGCACCAGAGGAACAGAAGGCCTCCACAAGCACCAACATATG 1562
||||| ||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 2419 TCTGAAAGTTACACCCAAAATAAGGCTTTAACTGCACCAGAGGAACACAAGGCCTCCACAAGCACCAACATATG 2492
Query 1563 TGAGCTCTGCACCTGCGGAGATGAGACTCTGTCATGTGTTGGTCTCAGCCCAAAGCAGAGGCTCCGCCAAGTGC 1636
|||||||||.||||||||||||||||...||||||||.|||.|||||.||||.|||||||||||||||||||||
Sbjct 2493 TGAGCTCTGTACCTGCGGAGATGAGATGTTGTCATGTATTGATCTCAACCCAGAGCAGAGGCTCCGCCAAGTGC 2566
Query 1637 CTGTGCCAGAGCCCGACACCTACAATGGCATCTTCACCACCTTAAATTTCCAAGGAAACTATATTTCATACCTT 1710
||||||||||||||.|||||.|||||||||.||||||||.|||||||||||||||||||||||||||.|||.||
Sbjct 2567 CTGTGCCAGAGCCCAACACCCACAATGGCACCTTCACCATCTTAAATTTCCAAGGAAACTATATTTCTTACATT 2640
Query 1711 GATGGAAATGTATGGAAAGCATACAGTTGGACCGAGAAACTAATTCTCAGTGAAAATTATTTGACTGAATTACC 1784
||||||||||||||||||||||||||||||||||||||||
Sbjct 2641 GATGGAAATGTATGGAAAGCATACAGTTGGACCGAGAAAC---------------------------------- 2680
Query 1785 TAAGGATTCATTTGAAGGCCTGCTATACCTCCAGTATTTAATTCTCAATCGCAATCCTCTGACTACTGTCGAAG 1858
||||||||||||.||||||||||||.|||||.||||
Sbjct 2681 --------------------------------------TAATTCTCAATCACAATCCTCTGACAACTGTTGAAG 2716
Query 1859 ATCCATATCTCTTTGAACTGCCGGCATTAAAATATCTAGACATGGGAACAACACACATCACACTTACAACACTT 1932
||||.|||||||||.||.||||.|||||||||||||||||||||||||||||.|...||.||||||||||||||
Sbjct 2717 ATCCGTATCTCTTTAAATTGCCAGCATTAAAATATCTAGACATGGGAACAACGCTAGTCCCACTTACAACACTT 2790
Query 1933 AAGAACATTCTCACGATGACTGTTGAACTGGAAAAACTGATCTTACCTAGCCATATGGCCTGCTGCCTCTGCCA 2006
|||||||||||||.||||||||||||||||||||||||.
Sbjct 2791 AAGAACATTCTCATGATGACTGTTGAACTGGAAAAACTC----------------------------------- 2829
Query 2007 ATTTAAAAATAGCATTGAGGCTGTCTGCAAGACAGTCAAGCTGCATTGCAACACTGCATGTCTGACTAACAGCA 2080
Sbjct 2830 -------------------------------------------------------------------------- 2829
Query 2081 TACATTGTCCTGAAGAAGCATCTGTAGGGAATCCAGAAGGAGCGTTCATGAAGATGTTACAAGCCCGGAAGCAG 2154
Sbjct 2830 -------------------------------------------------------------------------- 2829
Query 2155 CACATGAGCACTCAGCTGACTATTGAGTCGGAGGCGCCCTCAGACAGCAGTGGCATCAACTTGTCAGGCTTTGG 2228
Sbjct 2830 -------------------------------------------------------------------------- 2829
Query 2229 GGGTGATCAGCTTGAAATTCAGCTAACCGAGCAGCTACGGTCCCTCATCCCCAACGAGGATGTGAGAAAGTTCA 2302
Sbjct 2830 -------------------------------------------------------------------------- 2829
Query 2303 TGTCTCATGTTATCCGGACCTTGAAAATGGAATGTTCAGAAACACATGTGCAAGGGAGCTGTGCCAAGCTCATG 2376
Sbjct 2830 -------------------------------------------------------------------------- 2829
Query 2377 TTGCGAACAGGCCTCCTGATGAAGCTTCTCAGCGAGCAGCAGGAAGCAAAGGCATTGAATGTAGAATGGGATAC 2450
Sbjct 2830 -------------------------------------------------------------------------- 2829
Query 2451 GGACCAACAAAAAACAAATTATATTAATGAGAACATGGAACAGAATGAACAGAAAGAGCAGAAGTCAAGTGAGC 2524
Sbjct 2830 -------------------------------------------------------------------------- 2829
Query 2525 TCATGAAAGAAGTTCCAGGAGATGACTATAAGAACAAACTCATCTTCGCAATATCTGTGACTGTAATACTAATA 2598
Sbjct 2830 -------------------------------------------------------------------------- 2829
Query 2599 ATTTTGATTATAATTTTTTGTCTTATAGAGGTGAATTCACATAAAAGGGCATCAGAAAAATACAAAGACAACCC 2672
Sbjct 2830 -------------------------------------------------------------------------- 2829
Query 2673 ATCAATATCAGGAGCC 2688
Sbjct 2830 ---------------- 2829
