Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13037
- Subject:
- NM_001355618.1
- Aligned Length:
- 1875
- Identities:
- 634
- Gaps:
- 1185
Alignment
Query 1 ATGCCGTCTGAACGCTGCCTCAGTATTCAAGAAATGCTGACAGGCCAGAGGCTCTGCCACTCCGAATCTCACAA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 TGACAGTGTCCTGGCAGCGCTGAATCAGCAGAGGAGTGATGGCATCCTCTGCGACATCACCCTGATTGCTGAGG 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 AACAGAAATTCCATGCTCACAAGGCAGTCCTAGCAGCATGCAGTGACTATTTCCGGGCAATGTTCAGTCTTTGT 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 ATGGTGGAAAGTGGAGCTGATGAGGTTAATTTGCACGGTGTGACCAGCCTTGGCTTAAAGCAGGCTCTGGAGTT 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 TGCATACACAGGACAGATTTTGCTGGAGCCAGGTGTGATCCAGGATGTGCTAGCAGCGGGCAGTCACCTACAGC 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 TGTTGGAGCTTCTCAATTTATGCTCCCACTATCTCATCCAGGAATTAAATAGCTTTAATTACTTGGATCTGTAC 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 AGACTTGCTGACCTCTTTAACCTCACTTTGTTGGAGAAGGCAGTGATCGATTTCTTAGTGAAACATCTCTCTGA 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 ACTCCTGAAGAGCCGCCCAGAAGAAGTTCTAACGCTTCCCTATTGCCTGCTTCAGGAGGTGCTGAAGAGCGACC 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 GCCTGACCTCCCTGAGTGAAGAGCAGATCTGGCAGCTAGCTGTGAGGTGGTTGGAACACAACTGCCACTACCAG 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 TACATGGACGAGCTCCTGCAATACATCCGCTTTGGCCTAATGGATGTGGATACTCTCCATACAGTTGCCCTGTC 740
||||||||||||||.|||||.||.||||||||.||
Sbjct 1 ---------------------------------------ATGGATGTGGATACACTCCACACGGTTGCCCTATC 35
Query 741 CCACCCCCTTGTCCAAGCAAGTGAGACTGCAACAGCCCTTGTCAACGAGGCCCTGGAATACCACCAGAGCATCT 814
|||||||||.||.||.|||||||||||.|||||.||||||||||||||||||||||||||||||||.|||||||
Sbjct 36 CCACCCCCTGGTGCAGGCAAGTGAGACGGCAACTGCCCTTGTCAACGAGGCCCTGGAATACCACCAAAGCATCT 109
Query 815 ATGCACAGCCTGTCTGGCAGACTCGCAGGACCAAACCACGATTCCAGTCAGACACTCTGTATATCATTGGTGGG 888
|||||||||||||.||||||||.|||.||||.|||||.|||||||||||.||.|||||.|||||.|||||||||
Sbjct 110 ATGCACAGCCTGTGTGGCAGACCCGCCGGACAAAACCGCGATTCCAGTCCGATACTCTCTATATTATTGGTGGG 183
Query 889 AAAAAGCGCGAGGTCTGCAAGGTCAAGGAACTTCGGTACTTCAATCCTGTTGATCAGGAGAATGCTCTCATAGC 962
||.|||||.|||||||||||.||||||||||||||.||||||||||||||.||.|||||||||||.||||||||
Sbjct 184 AAGAAGCGTGAGGTCTGCAAAGTCAAGGAACTTCGTTACTTCAATCCTGTGGACCAGGAGAATGCCCTCATAGC 257
Query 963 TGCCATTGCCAACTGGAGTGAGCTGGCTCCCATGCCTGTGGGAAGGAGCCACCATTGTGTGGCAGTCATGGGGG 1036
.|||||||||||||||||||||||||||||||||||.||||||||||||||.||.|||||||||||||||||||
Sbjct 258 CGCCATTGCCAACTGGAGTGAGCTGGCTCCCATGCCGGTGGGAAGGAGCCATCACTGTGTGGCAGTCATGGGGG 331
Query 1037 ACTTCCTGTTTGTGGCAGGAGGGGAAGTTGAGCATGCCAGTGGCCGGACGTGTGCTGTGAGGACTGCCTGTCGC 1110
|||||||||||||.||||||||.|||||.||.|||||||||||||||||.|||||.||||||||.|||||||||
Sbjct 332 ACTTCCTGTTTGTAGCAGGAGGAGAAGTGGAACATGCCAGTGGCCGGACATGTGCCGTGAGGACAGCCTGTCGC 405
Query 1111 TATGACCCCCGCAGTAATTCCTGGGCAGAGATAGCACCCATGAAAAACTGCCGGGAGCATTTTGTGCTGGGTGC 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 406 TATGACCCCCGCAGTAATTCCTGGGCAGAGATAGCACCCATGAAAAACTGCCGGGAACATTTTGTGCTGGGTGC 479
Query 1185 CATGGAGGAATACCTCTATGCAGTTGGGGGCAGAAATGAACTGCGCCAGGTTCTGCCTACAGTTGAGCGATATT 1258
||||||.|||||||||||||||||.||||||||||||||||||.||||.|||||.|||||||||||.|||||.|
Sbjct 480 CATGGATGAATACCTCTATGCAGTAGGGGGCAGAAATGAACTGTGCCAAGTTCTACCTACAGTTGAACGATACT 553
Query 1259 GCCCCAAGAAGAACAAATGGACTTTTGTTCAGTCCTTTGACAGATCCCTTTCATGCCATGCTGGATATGTGGCT 1332
||||||||||||||||||||||||||||.||||||||||||||||||||.||.||.||.|||||||||||||||
Sbjct 554 GCCCCAAGAAGAACAAATGGACTTTTGTGCAGTCCTTTGACAGATCCCTCTCGTGTCACGCTGGATATGTGGCT 627
Query 1333 GATGGTCTTCTTTGGATATCAGGTAG-------AACATACCTCA-TGTTGGATTTATCAAAACACACTTTCATT 1398
||||||||||||||||||||||||.| ||| |||.|| .| |||||.||||.|| |
Sbjct 628 GATGGTCTTCTTTGGATATCAGGTGGGGTGACAAAC--ACCGCACAG-------TATCAGAACAGAC------T 686
Query 1399 G-TGGTATAT------------ATT------------------------------------------------- 1410
| |||||||| |.|
Sbjct 687 GATGGTATATGAACCTAACCAGAATAAGTGGATAAGTCGCAGCCCCATGCTACAGAGAAGAGTCTACCACTCCA 760
Query 1411 -------------------------------------------------------------------------- 1410
Sbjct 761 TGGCTGCTGTCCAAAGGAAGCTTTATGTGCTTGGAGGCAATGACCTGGATTACAATAATGACCGGATTCTCGTG 834
Query 1411 -------------------------------------------------------------------------- 1410
Sbjct 835 CGTCATATAGATTCTTACAACATTGACACTGATCAGTGGACGCGCTGTAATTTCAACTTGTTGACTGGCCAGAA 908
Query 1411 -------------------------------------------------------------------------- 1410
Sbjct 909 TGAATCTGGAGTCGCTGTCCATAATGGGAGAATATATTTAGTTGGTGGATATTCAATTTGGACAAATGAGCCTC 982
Query 1411 -------------------------------------------------------------------------- 1410
Sbjct 983 TGGCTTGTATCCAGGTATTGGATGTGAGCAGAGAAGGCAAAGAGGAAGTGTTCTACGGACCTACACTGCCCTTT 1056
Query 1411 -------------------------------------------------------------------------- 1410
Sbjct 1057 GCTTCCAACGGCATAGCGGCGTGCTTCCTTCCGGCTCCGTATTTCACATGCCCCAACCTGCAGACTCTGCAAGT 1130
Query 1411 ------------------------- 1410
Sbjct 1131 GCCTCACCACAGGATCGGCACTGTC 1155
