Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13039
- Subject:
- XR_001738598.2
- Aligned Length:
- 5862
- Identities:
- 1518
- Gaps:
- 4304
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GACCAGGCGGCGGCGGCTCTGCTGAGGTGACAACGTGCTAGCAGCCCTCGCTCGCTCTGGGCGCCTCCTCGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCAGCGTCCGCTCTGGCCGCGCTCGAGGAGCCCTTCAGCCCGCCGCTGCGCTATGAAGGCCCCTCTCTGGGGCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGCCGAGGCTGGAGCCGGCTCCCTCTGCTCGCGGGCAAGTGTGAAGAGAGAGGCGCGGGCGGGAGCCGGGGCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGCGCGGCGCTCGCGGGCCGGCGCGGGTTCCAGGTGAGCGCGGACTCGGCGAGCCCCGCACTCGGCGCGGCCGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCGGCGCCTGCTGGGCTTGATCTGAGGCTGAATCCCGTGTGTGGACCGCCGTTCCCTCTTCGCGGGATCGTTGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCAGGATAGCAGATGCATTTTTGTAGAAGCATTTTGAGGATGAATGTTTGCAAATCATTTTGAAATTGCCAAGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCCACATACATGGAATGTATCCTGCTTTCATCTTGGAGTTCACCTGTGTGGCTTGGATTTATCACAGTAGCATT 518
Query 1 ----------------------------------------ATGAGGAGATTTGTCTACTGCAAGGTGGTTCTAG 34
||||||||||||||||||||||||||||||||||
Sbjct 519 TGTCTTCAATCTGTGTGTTAACTAGAAATCAAGGAAAGACATGAGGAGATTTGTCTACTGCAAGGTGGTTCTAG 592
Query 35 CCACTTCGCTGATGTGGGTTCTTGTTGATGTCTTCTTACTGCTGTACTTCAGTGAATGTAACAAATGTGATGAC 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CCACTTCGCTGATGTGGGTTCTTGTTGATGTCTTCTTACTGCTGTACTTCAGTGAATGTAACAAATGTGATGAC 666
Query 109 AAGAAGGAGAGATCTCTGCTGCCTGCATTGAGGGCTGTTATTTCAAGAAACCAAGAAGGGCCAGGAGAAATGGG 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAGAAGGAGAGATCTCTGCTGCCTGCATTGAGGGCTGTTATTTCAAGAAACCAAGAAGGGCCAGGAGAAATGGG 740
Query 183 AAAAGCTGTGTTGATTCCTAAAGATGACCAGGAGAAAATGAAAGAGCTGTTTAAAATCAATCAGTTTAACCTTA 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAAAGCTGTGTTGATTCCTAAAGATGACCAGGAGAAAATGAAAGAGCTGTTTAAAATCAATCAGTTTAACCTTA 814
Query 257 TGGCCAGTGATTTGATTGCCCTTAATAGAAGTCTGCCAGATGTAAGATTAGAAGGATGTAAGACAAAAGTCTAC 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TGGCCAGTGATTTGATTGCCCTTAATAGAAGTCTGCCAGATGTAAGATTAGAAGGATGTAAGACAAAAGTCTAC 888
Query 331 CCTGATGAACTTCCAAACACAAGTGTAGTCATTGTGTTTCATAATGAAGCTTGGAGCACTCTCCTTAGAACTGT 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CCTGATGAACTTCCAAACACAAGTGTAGTCATTGTGTTTCATAATGAAGCTTGGAGCACTCTCCTTAGAACTGT 962
Query 405 TTACAGTGTGATAAATCGTTCCCCACACTATCTACTCTCAGAGGTCATCTTGGTAGATGATGCCAGTGAAAGAG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TTACAGTGTGATAAATCGTTCCCCACACTATCTACTCTCAGAGGTCATCTTGGTAGATGATGCCAGTGAAAGAG 1036
Query 479 ATTTTCTCAAGTTGACATTAGAGAATTACGTGAAAAATTTAGAAGTGCCAGTAAAAATTATTAGGATGGAAGAA 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ATTTTCTCAAGTTGACATTAGAGAATTACGTGAAAAATTTAGAAGTGCCAGTAAAAATTATTAGGATGGAAGAA 1110
Query 553 CGCTCTGGGTTAATACGTGCCCGTCTTCGAGGAGCAGCTGCTTCAAAAGGGCAGGTCATAACTTTTCTTGATGC 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CGCTCTGGGTTAATACGTGCCCGTCTTCGAGGAGCAGCTGCTTCAAAAGGGCAGGTCATAACTTTTCTTGATGC 1184
Query 627 ACACTGTGAATGCACGTTAGGATGGCTGGAGCCTTTGCTGGCAAGAATAAAGGAAGACAGGAAAACGGTTGTCT 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 ACACTGTGAATGCACGTTAGGATGGCTGGAGCCTTTGCTGGCAAGAATAAAGGAAGACAGGAAAACGGTTGTCT 1258
Query 701 GCCCTATCATTGATGTGATTAGTGATGATACTTTTGAATATATGGCTGGGTCAGACATGACTTATGGGGGTTTT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GCCCTATCATTGATGTGATTAGTGATGATACTTTTGAATATATGGCTGGGTCAGACATGACTTATGGGGGTTTT 1332
Query 775 AACTGGAAACTGAATTTCCGCTGGTATCCTGTTCCCCAAAGAGAAATGGACAGGAGGAAAGGAGACAGAACATT 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AACTGGAAACTGAATTTCCGCTGGTATCCTGTTCCCCAAAGAGAAATGGACAGGAGGAAAGGAGACAGAACATT 1406
Query 849 ACCTGTCAGGACCCCTACTATGGCTGGTGGCCTATTTTCTATTGACAGAAACTACTTTGAAGAGATAGGAACTT 922
||||||||
Sbjct 1407 ACCTGTCA------------------------------------------------------------------ 1414
Query 923 ACGATGCAGGAATGGATATCTGGGGTGGAGAGAATCTTGAAATGTCTTTTAGGATTTGGCAATGTGGAGGCTCC 996
||||||||||||||||||||||
Sbjct 1415 ----------------------------------------------------GATTTGGCAATGTGGAGGCTCC 1436
Query 997 TTGGAGATTGTTACTTGCTCCCATGTTGGTCATGTTTTTCGGAAGGCAACTCCATACACTTTTCCTGGTGGCAC 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TTGGAGATTGTTACTTGCTCCCATGTTGGTCATGTTTTTCGGAAGGCAACTCCATACACTTTTCCTGGTGGCAC 1510
Query 1071 TGGTCATGTCATCAACAAGAACAACAGGAGACTGGCAGAAGTTTGGATGGATGAATTTAAAGATTTCTTCTACA 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1511 TGGTCATGTCATCAACAAGAACAACAGGAGACTGGCAGAAGTTTGGATGGATGAATTTAAAGATTTCTTCTACA 1584
Query 1145 TCATATCCCCAGGTGTTGTCAAAGTGGATTATGGAGATGTGTCAGTCAGAAAAACACTAAGAGAAAATCTGAAG 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1585 TCATATCCCCAGGTGTTGTCAAAGTGGATTATGGAGATGTGTCAGTCAGAAAAACACTAAGAGAAAATCTGAAG 1658
Query 1219 TGTAAGCCCTTTTCTTGGTACCTAGAAAACATCTATCCGGACTCCCAGATCCCAAGACGTTATTACTCACTTGG 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1659 TGTAAGCCCTTTTCTTGGTACCTAGAAAACATCTATCCGGACTCCCAGATCCCAAGACGTTATTACTCACTTGG 1732
Query 1293 TGAGATAAGAAATGTTGAAACCAATCAGTGTTTAGACAACATGGGCCGCAAGGAAAATGAAAAAGTGGGTATAT 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 TGAGATAAGAAATGTTGAAACCAATCAGTGTTTAGACAACATGGGCCGCAAGGAAAATGAAAAAGTGGGTATAT 1806
Query 1367 TCAACTGTCATGGTATGGGAGGAAATCAGGTATTTTCTTACACTGCTGACAAAGAAATCCGAACCGATGACTTG 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1807 TCAACTGTCATGGTATGGGAGGAAATCAGGTATTTTCTTACACTGCTGACAAAGAAATCCGAACCGATGACTTG 1880
Query 1441 TGCTTGGATGTTTCTAGACTCAATGGACCTGTAATCATGTTAAAATGCCACCATATGAGAGGAAATCAGTTATG 1514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1881 TGCTTGGATGTTTCTAGACTCAATGGACCTGTAATCATGTTAAAATGCCACCATATGAGAGGAAATCAGTTATG 1954
Query 1515 GGAATATGATGCTGAGTCTTGTCTCTC---------AGTGAACAAAGTAGCTGATGGCTCCCAGCATCCTACTG 1579
|||||||||||||||| .|.|||.| .||.||| ||||.|..|||.|| |.|..|.|||.|||
Sbjct 1955 GGAATATGATGCTGAG---AGACTCACGTTGCGACATGTTAAC--AGTAACCAATGTCT-CGATGAACCTTCTG 2022
Query 1580 TGGAA-AC-----------------------CTGTAATGATAGCACTTTGCAAAAATGGCTACTAAGAAA---- 1625
..||| || |||||.||..||||..|..|||.|.|||||.|||||.||
Sbjct 2023 AAGAAGACAAAATGGTGCCTACAATGCAGGACTGTAGTGGAAGCAGATCCCAACAGTGGCTGCTAAGGAACATG 2096
Query 1626 --------------------------------------------CTA--------------------TACAA-- 1633
||| |.|||
Sbjct 2097 ACCTTGGGCACATGAAGATCATGTCCTCCAAGCCATGAAAGTGTCTACGCTTTTGTTTTTCCATTATTTCAATT 2170
Query 1634 ----------------------GAATGGAAATTTTTAGAAATATTTTTGGGAATTCTA--------------CT 1671
||||.||||.|||||.||||..|||| .|.|||||| ||
Sbjct 2171 GGGGGAAAATATTAACTTTGCTGAATTGAAAGTTTTAAAAATCCTTTT-AGTATTCTAAAACACAATTGTTTCT 2243
Query 1672 GATTACATTCTC-------------------------------------------------------------- 1683
.|||...||||.
Sbjct 2244 AATTCGTTTCTAGAAATGTTTGCTTATTTCCCTACTAAAATTTGTATCTGATCAAAGCACATAAGAATATAAAT 2317
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 2318 AATAGCAAACTACTATTAAACAACAGAACAACTTGTAAAACAAATTGTGTTTGCTTTAAGAAAAATGTTTATTG 2391
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 2392 CACTCATGTCATAGGGTTAATTGGAGGTTATTTTATTTTTGGTTGTCATGGTGATTGAAAGAGATAATGTAAAT 2465
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 2466 GCCTTATAAAATCTTCATTATGAAATATTATCAGTTGCTTTATAAACTCACTCTTTTTATGGATCCTTCATGGA 2539
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 2540 AACATGTTTGATTTCTGTGTCTACAACAGGGCCACATATTAAATTACTTCTGAATGGTGAATTCATCTTACAAA 2613
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 2614 ATGTTCCAAGTTTTGGACAAGGAAAAACATTACATTGGATATTGAATTCATGGAGCCTTTACAGAAGCATCACA 2687
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 2688 TTTAAACCAATGTGAATTCAAAAAAGAGAAGGAAACTTTTTAAATTCAATTTAGAGTACATAAAAAAAGAAATC 2761
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 2762 CGCGAAGCATTGAGGGGAACAAGATGAGTCTAATCCGCAGCACTTCGATCACTGTGAGAGAACTCAAAGTGGGT 2835
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 2836 TGCAATCATTCCTAACACAGGCTGAAACTAAACAATCTTGCTCCTAGAGTTTATGTTGGATACTCAATTCTTAA 2909
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 2910 CCAAAATCTTGGTCTCCACAAACTCTACCATCCCTTTTCTCTTCACTCTATAGACAGTGGCATGCCATTGATGC 2983
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 2984 TGTACAGAATTGCAGGTGAAAGGGAGAATTTTAGACTTAATTTTTAACTCTATTGCACTTAAAGATTTTAGTTA 3057
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3058 GGTTACCACTGTCATTTTCATTTTCTATGTTAAAGAATACCTTTCAGTGCTGTGCTCCAGTATCTAAAAATTTT 3131
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3132 ATCACCAGGGGAATAAACTCAATACACATTCATTAAACTTTTGTTGTAATTAAACTGCTATATATTGTTTGCCA 3205
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3206 TATATTATGGCCCAAGGAATATAGTTATAATCAGGCTACATTCACATTTTCTTTTCTCATCTTAAAACCCTTTA 3279
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3280 TGTTCAAAATACATTAGCAGAGGCCATGAAAGTGAAAAAAAATCAGATTTTTGCTAGTAAGTTTTTATATTTGA 3353
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3354 CATCATTTTAAATGCTCAAAGAGTTGCCCTATATATGCATGTTATCCATTATAAATGCACTCAGCAGCTAAGAG 3427
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3428 AAATTTGAGAGGAAAAGTGGAAGAAGTGTTTTCTGGAGCAGAAGATTCCACTTCTTTGGTCCTCATCTTTACTT 3501
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3502 AAAAAGCTCTTATAGAAAGGATTAATCATTTTGACTGCATACAAACTATGTCTCTGACATGCACATACACTGCT 3575
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3576 TTATAATGAAAATGAGGACACTTTCTGATGGTCAGTAAAATCTTAAATGATTTTTGCCACTGGTATTCCTTCCT 3649
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3650 CTTTTGACTTTTTATTGGTACAACTGTAGGGAAGAATCTACAACCTGGAGCATTTCAGGTTTGCTCTTTAAATA 3723
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3724 TAGACACCCCTCACCATGAGCTCTCTGTGAATCCGTGAATTTCCTAAAATTGTAAGCAAAATGTTGAATATCAG 3797
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3798 GGCATTTTTTTTTCTGAGGTGGGAGTATGTCACTCACAGCAAACTTGGAAAGAAGGCTATGACTCCCAAGAGGC 3871
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3872 AGTGAACCATTGCCTTAAATTAATAGCAGCCTCTCAAGTCCATTGAGGCCTCATGTAAAATTCCCATTTTTCAT 3945
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3946 CTTTACACTCCTTTTCTCCCCTCATTTCCTCTTCTCCTTACTAAGGTAAAAAGACCCTGCACAGCATTATTACT 4019
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4020 TAAGTTGAAAAAGCTTCAACTCTCAAGGACTCATGTATACCATATGTTCCACTTATTGCTTTGTTAGTCAAAAT 4093
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4094 GCATGTTATGTAGAAAATGGTCAATGGCAAATTTTTATAAATACAGCTACCCCATCAAAGCTGAACTTGAAACG 4167
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4168 TTTTAGCAGAATTTTAAATATGTGAAAGTTCATTGTGGTCATGGTGAGAAAACTAAAACTACATGAGTTTCATG 4241
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4242 TTAGAAAAGAATTTTTAAACAATCTTCAGATGGCTTGAACACGTGCCATTATAGTATCTAACAAAAAGTGGCAT 4315
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4316 AAAATATTACAAAACATCCAACACTAGAAAGCAATGACTAACATTTAATTTGTTTACAAAAATGTTTATTGTCT 4389
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4390 TCAGTACAAAAAGTTAAAACCATGATTGGATTCATAATGCACTTGTCTTATCCCTTATTTATGGAGCTAGACTG 4463
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4464 ACATATTTCAAACCAATCTCTTCTGTGGTCTTCTCCATCTCAGTTAATGCAACTTCAACCTTCCAGATGCTCAG 4537
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4538 GTCAAAAACTGAAAGTTGCTTTTGACTCCTCTATTTCTGTTTCAACTCTCGTCTAATCCAACAGCAAATCCCCT 4611
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4612 TGATGCTACCTTTGAAATATAACTAGAAAAGAATGACTTGCCACCATATCCACTAGGTGTCACTACCTCTAACC 4685
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4686 TTTTTAATCGCAATATGCTTATTATTTAGTTCCCTAATTTCCCAGTCCTTGTCTTGAACAATCTTTTCTCAGTA 4759
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4760 CAACAGCCATAGTGATTCTGTTAACCATGAATTTGATTGTGTCACTTCCCTGCTCACAATCTTCCAATGACTTC 4833
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4834 TCCCTCCGGTGGCCTTCAAGGTCCTTTATGAGTGTTACCCCTCTACACGTCCACACCACTCACCACACATACAT 4907
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4908 ACACATGCACACACACACACATGCAATTCTACCTTTTTCTAACACCATCTCTTATCTCTCATTATTCTGCCTCT 4981
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4982 TACTTACCCTATTATGGCTCCCAAGAAAGTTCCTGCTTTAGTGTTTTGTTCCCTCTGCCCCAGAGAGCTCCCCT 5055
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 5056 TAGTGATCTCAGTTCAAATATTATCTTATCAGTAAGACAAACCCTTCTCCCATCTGCCTTCCCTATCCCCTGTA 5129
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 5130 CCTGACAATCTATGAGTTTGCTTCTTTATTTCTGTCTATACTTCCCCCTCCCCAGCCCCAAACATGCCCATCAC 5203
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 5204 ATGCCCTAGAAGGTAAGTCCCATGAAGGCAGGGGCTTTGTCAGTTTTGTTCATTTGGTATTTCTGGCATATATA 5277
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 5278 TTCTCTAAATATTTCTTGAATTAATGAACTGAAAAATGTGTGTTAAAGTTGCTAAGTGTAACTGTATCATACTT 5351
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 5352 TTTTTGTATTTTAAATTTTAAAATAAAGGCTAATATATTTAGACAGGATTTCCAAAAACTTTGTCTTCAAATTT 5425
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 5426 TAATTTTCTTCCTAATATTCTTCACATTAAACTATGGACTCTAATTTTCTGGATAAAATATCCTGCCTTATGGA 5499
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 5500 AATGAAATATGAAATTTTATTAAAATGCTGCTATATTACATAAGTTGCTTCATTAAGCTAAAAATGGTTTTTAT 5573
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 5574 TTTTTGGTTGTGTCCAATGGCCACTTGAAGGTATAAGATTTTGACTTTCAGAGGAGAGATATCACTGTCTTAAA 5647
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 5648 AATTATGTATTTTCATGATTTCTTAAGAACTATTACTAAATTTATCTTCTAAGTGCAGTCAATGGAATAAACAC 5721
Query 1684 ---------------- 1683
Sbjct 5722 AGAGATTTTTAAAGGA 5737
