Construct: ORF ccsbBroad304_13039
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001533.1_s304c1, BRDN0000408669
- Derived from:
- ccsbBroadEn_13039
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GALNT13 (114805)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_13039
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 114805 | GALNT13 | polypeptide N-acetylgalacto... | NM_001301627.1 | 100% | 100% | |
| 2 | human | 114805 | GALNT13 | polypeptide N-acetylgalacto... | XM_017003260.2 | 100% | 100% | |
| 3 | human | 114805 | GALNT13 | polypeptide N-acetylgalacto... | XM_011510537.3 | 98.2% | 98.2% | 1529_1558del |
| 4 | human | 114805 | GALNT13 | polypeptide N-acetylgalacto... | XM_017003258.1 | 98.2% | 98.2% | 1529_1558del |
| 5 | human | 114805 | GALNT13 | polypeptide N-acetylgalacto... | XM_017003259.1 | 98.2% | 98.2% | 1529_1558del |
| 6 | human | 114805 | GALNT13 | polypeptide N-acetylgalacto... | NM_052917.4 | 92.5% | 91.7% | (many diffs) |
| 7 | human | 114805 | GALNT13 | polypeptide N-acetylgalacto... | XM_017003261.1 | 92.5% | 91.7% | (many diffs) |
| 8 | human | 114805 | GALNT13 | polypeptide N-acetylgalacto... | XM_017003262.1 | 67.7% | 67.7% | 0_1ins543 |
| 9 | human | 114805 | GALNT13 | polypeptide N-acetylgalacto... | XM_011510538.2 | 66.5% | 66.5% | 0_1ins543;986_1015del |
| 10 | human | 114805 | GALNT13 | polypeptide N-acetylgalacto... | XM_024452643.1 | 61.1% | 60% | (many diffs) |
| 11 | human | 114805 | GALNT13 | polypeptide N-acetylgalacto... | XR_001738598.2 | 25.8% | (many diffs) | |
| 12 | human | 114805 | GALNT13 | polypeptide N-acetylgalacto... | XR_001738599.2 | 25.8% | (many diffs) | |
| 13 | mouse | 271786 | Galnt13 | UDP-N-acetyl-alpha-D-galact... | NM_173030.2 | 87.1% | 91.4% | (many diffs) |
| 14 | mouse | 271786 | Galnt13 | UDP-N-acetyl-alpha-D-galact... | XM_006498091.2 | 87.1% | 91.4% | (many diffs) |
| 15 | mouse | 271786 | Galnt13 | UDP-N-acetyl-alpha-D-galact... | XM_006498092.2 | 87.1% | 91.4% | (many diffs) |
| 16 | mouse | 271786 | Galnt13 | UDP-N-acetyl-alpha-D-galact... | XM_006498087.3 | 81.1% | 85.1% | (many diffs) |
| 17 | mouse | 271786 | Galnt13 | UDP-N-acetyl-alpha-D-galact... | XM_006498088.3 | 81.1% | 85.1% | (many diffs) |
| 18 | mouse | 271786 | Galnt13 | UDP-N-acetyl-alpha-D-galact... | XM_006498089.3 | 81.1% | 85.1% | (many diffs) |
| 19 | mouse | 271786 | Galnt13 | UDP-N-acetyl-alpha-D-galact... | XM_006498090.3 | 81.1% | 85.1% | (many diffs) |
| 20 | mouse | 271786 | Galnt13 | UDP-N-acetyl-alpha-D-galact... | XM_006498093.3 | 60.4% | 64.1% | (many diffs) |
| 21 | mouse | 271786 | Galnt13 | UDP-N-acetyl-alpha-D-galact... | XR_374098.3 | 49.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1752
- ORF length:
- 1683
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gaggagattt gtctactgca aggtggttct agccacttcg ctgatgtggg 121 ttcttgttga tgtcttctta ctgctgtact tcagtgaatg taacaaatgt gatgacaaga 181 aggagagatc tctgctgcct gcattgaggg ctgttatttc aagaaaccaa gaagggccag 241 gagaaatggg aaaagctgtg ttgattccta aagatgacca ggagaaaatg aaagagctgt 301 ttaaaatcaa tcagtttaac cttatggcca gtgatttgat tgcccttaat agaagtctgc 361 cagatgtaag attagaagga tgtaagacaa aagtctaccc tgatgaactt ccaaacacaa 421 gtgtagtcat tgtgtttcat aatgaagctt ggagcactct ccttagaact gtttacagtg 481 tgataaatcg ttccccacac tatctactct cagaggtcat cttggtagat gatgccagtg 541 aaagagattt tctcaagttg acattagaga attacgtgaa aaatttagaa gtgccagtaa 601 aaattattag gatggaagaa cgctctgggt taatacgtgc ccgtcttcga ggagcagctg 661 cttcaaaagg gcaggtcata acttttcttg atgcacactg tgaatgcacg ttaggatggc 721 tggagccttt gctggcaaga ataaaggaag acaggaaaac ggttgtctgc cctatcattg 781 atgtgattag tgatgatact tttgaatata tggctgggtc agacatgact tatgggggtt 841 ttaactggaa actgaatttc cgctggtatc ctgttcccca aagagaaatg gacaggagga 901 aaggagacag aacattacct gtcaggaccc ctactatggc tggtggccta ttttctattg 961 acagaaacta ctttgaagag ataggaactt acgatgcagg aatggatatc tggggtggag 1021 agaatcttga aatgtctttt aggatttggc aatgtggagg ctccttggag attgttactt 1081 gctcccatgt tggtcatgtt tttcggaagg caactccata cacttttcct ggtggcactg 1141 gtcatgtcat caacaagaac aacaggagac tggcagaagt ttggatggat gaatttaaag 1201 atttcttcta catcatatcc ccaggtgttg tcaaagtgga ttatggagat gtgtcagtca 1261 gaaaaacact aagagaaaat ctgaagtgta agcccttttc ttggtaccta gaaaacatct 1321 atccggactc ccagatccca agacgttatt actcacttgg tgagataaga aatgttgaaa 1381 ccaatcagtg tttagacaac atgggccgca aggaaaatga aaaagtgggt atattcaact 1441 gtcatggtat gggaggaaat caggtatttt cttacactgc tgacaaagaa atccgaaccg 1501 atgacttgtg cttggatgtt tctagactca atggacctgt aatcatgtta aaatgccacc 1561 atatgagagg aaatcagtta tgggaatatg atgctgagtc ttgtctctca gtgaacaaag 1621 tagctgatgg ctcccagcat cctactgtgg aaacctgtaa tgatagcact ttgcaaaaat 1681 ggctactaag aaactataca agaatggaaa tttttagaaa tatttttggg aattctactg 1741 attacattct cttgccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc 1801 tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga 1861 caatcaacct ctggatta