Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13039
- Subject:
- XR_001738599.2
- Aligned Length:
- 6053
- Identities:
- 1565
- Gaps:
- 4488
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GACCAGGCGGCGGCGGCTCTGCTGAGGTGACAACGTGCTAGCAGCCCTCGCTCGCTCTGGGCGCCTCCTCGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCAGCGTCCGCTCTGGCCGCGCTCGAGGAGCCCTTCAGCCCGCCGCTGCGCTATGAAGGCCCCTCTCTGGGGCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGCCGAGGCTGGAGCCGGCTCCCTCTGCTCGCGGGCAAGTGTGAAGAGAGAGGCGCGGGCGGGAGCCGGGGCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGCGCGGCGCTCGCGGGCCGGCGCGGGTTCCAGGTGAGCGCGGACTCGGCGAGCCCCGCACTCGGCGCGGCCGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCGGCGCCTGCTGGGCTTGATCTGAGGCTGAATCCCGTGTGTGGACCGCCGTTCCCTCTTCGCGGGATCGTTGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCAGGATAGCAGATGCATTTTTGTAGAAGCATTTTGAGGATGAATGTTTGCAAATCATTTTGAAATTGCCAAGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCCACATACATGGAATGTATCCTGCTTTCATCTTGGAGTTCACCTGTGTGGCTTGGATTTATCACAGTAGCATT 518
Query 1 ----------------------------------------ATGAGGAGATTTGTCTACTGCAAGGTGGTTCTAG 34
||||||||||||||||||||||||||||||||||
Sbjct 519 TGTCTTCAATCTGTGTGTTAACTAGAAATCAAGGAAAGACATGAGGAGATTTGTCTACTGCAAGGTGGTTCTAG 592
Query 35 CCACTTCGCTGATGTGGGTTCTTGTTGATGTCTTCTTACTGCTGTACTTCAGTGAATGTAACAAATGTGATGAC 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CCACTTCGCTGATGTGGGTTCTTGTTGATGTCTTCTTACTGCTGTACTTCAGTGAATGTAACAAATGTGATGAC 666
Query 109 AAGAAGGAGAGATCTCTGCTGCCTGCATTGAGGGCTGTTATTTCAAGAAACCAAGAAGGGCCAGGAGAAATGGG 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAGAAGGAGAGATCTCTGCTGCCTGCATTGAGGGCTGTTATTTCAAGAAACCAAGAAGGGCCAGGAGAAATGGG 740
Query 183 AAAAGCTGTGTTGATTCCTAAAGATGACCAGGAGAAAATGAAAGAGCTGTTTAAAATCAATCAGTTTAACCTTA 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAAAGCTGTGTTGATTCCTAAAGATGACCAGGAGAAAATGAAAGAGCTGTTTAAAATCAATCAGTTTAACCTTA 814
Query 257 TGGCCAGTGATTTGATTGCCCTTAATAGAAGTCTGCCAGATGTAAGATTAGAAGGATGTAAGACAAAAGTCTAC 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TGGCCAGTGATTTGATTGCCCTTAATAGAAGTCTGCCAGATGTAAGATTAGAAGGATGTAAGACAAAAGTCTAC 888
Query 331 CCTGATGAACTTCCAAACACAAGTGTAGTCATTGTGTTTCATAATGAAGCTTGGAGCACTCTCCTTAGAACTGT 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CCTGATGAACTTCCAAACACAAGTGTAGTCATTGTGTTTCATAATGAAGCTTGGAGCACTCTCCTTAGAACTGT 962
Query 405 TTACAGTGTGATAAATCGTTCCCCACACTATCTACTCTCAGAGGTCATCTTGGTAGATGATGCCAGTGAAAGAG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TTACAGTGTGATAAATCGTTCCCCACACTATCTACTCTCAGAGGTCATCTTGGTAGATGATGCCAGTGAAAGAG 1036
Query 479 ATTTTCTCAAGTTGACATTAGAGAATTACGTGAAAAATTTAGAAGTGCCAGTAAAAATTATTAGGATGGAAGAA 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ATTTTCTCAAGTTGACATTAGAGAATTACGTGAAAAATTTAGAAGTGCCAGTAAAAATTATTAGGATGGAAGAA 1110
Query 553 CGCTCTGGGTTAATACGTGCCCGTCTTCGAGGAGCAGCTGCTTCAAAAGGGCAGGTCATAACTTTTCTTGATGC 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CGCTCTGGGTTAATACGTGCCCGTCTTCGAGGAGCAGCTGCTTCAAAAGGGCAGGTCATAACTTTTCTTGATGC 1184
Query 627 ACACTGTGAATGCACGTTAGGATGGCTGGAGCCTTTGCTGGCAAGAATAAAGGAAGACAGGAAAACGGTTGTCT 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 ACACTGTGAATGCACGTTAGGATGGCTGGAGCCTTTGCTGGCAAGAATAAAGGAAGACAGGAAAACGGTTGTCT 1258
Query 701 GCCCTATCATTGATGTGATTAGTGATGATACTTTTGAATATATGGCTGGGTCAGACATGACTTATGGGGGTTTT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GCCCTATCATTGATGTGATTAGTGATGATACTTTTGAATATATGGCTGGGTCAGACATGACTTATGGGGGTTTT 1332
Query 775 AACTGGAAACTGAATTTCCGCTGGTATCCTGTTCCCCAAAGAGAAATGGACAGGAGGAAAGGAGACAGAACATT 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AACTGGAAACTGAATTTCCGCTGGTATCCTGTTCCCCAAAGAGAAATGGACAGGAGGAAAGGAGACAGAACATT 1406
Query 849 ACCTGTCAGGACCCCTACTATGGCTGGTGGCCTATTTTCTATTGACAGAAACTACTTTGAAGAGATAGGAACTT 922
||||||||
Sbjct 1407 ACCTGTCA------------------------------------------------------------------ 1414
Query 923 ACGATGCAGGAATGGATATCTGGGGTGGAGAGAATCTTGAAATGTCTTTTAGGATTTGGCAATGTGGAGGCTCC 996
||||||||||||||||||||||
Sbjct 1415 ----------------------------------------------------GATTTGGCAATGTGGAGGCTCC 1436
Query 997 TTGGAGATTGTTACTTGCTCCCATGTTGGTCATGTTTTTCGGAAGGCAACTCCATACACTTTTCCTGGTGGCAC 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TTGGAGATTGTTACTTGCTCCCATGTTGGTCATGTTTTTCGGAAGGCAACTCCATACACTTTTCCTGGTGGCAC 1510
Query 1071 TGGTCATGTCATCAACAAGAACAACAGGAGACTGGCAGAAGTTTGGATGGATGAATTTAAAGATTTCTTCTACA 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1511 TGGTCATGTCATCAACAAGAACAACAGGAGACTGGCAGAAGTTTGGATGGATGAATTTAAAGATTTCTTCTACA 1584
Query 1145 TCATATCCCCAGGTGTTGTCAAAGTGGATTATGGAGATGTGTCAGTCAGAAAAACACTAAGAGAAAATCTGAAG 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1585 TCATATCCCCAGGTGTTGTCAAAGTGGATTATGGAGATGTGTCAGTCAGAAAAACACTAAGAGAAAATCTGAAG 1658
Query 1219 TGTAAGCCCTTTTCTTGGTACCTAGAAAACATCTATCCGGACTCCCAGATCCCAAGACGTTATTACTCACTTGG 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1659 TGTAAGCCCTTTTCTTGGTACCTAGAAAACATCTATCCGGACTCCCAGATCCCAAGACGTTATTACTCACTTGG 1732
Query 1293 TGAGATAAGAAATGTTGAAACCAATCAGTGTTTAGACAACATGGGCCGCAAGGAAAATGAAAAAGTGGGTATAT 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 TGAGATAAGAAATGTTGAAACCAATCAGTGTTTAGACAACATGGGCCGCAAGGAAAATGAAAAAGTGGGTATAT 1806
Query 1367 TCAACTGTCATGGTATGGGAGGAAATCAGGTATTTTCTTACACTGCTGACAAAGAAATCCGAACCGATGACTTG 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1807 TCAACTGTCATGGTATGGGAGGAAATCAGGTATTTTCTTACACTGCTGACAAAGAAATCCGAACCGATGACTTG 1880
Query 1441 TGCTTGGATGTTTCTAGACTCAATGGACCTGTAATCATGTTAAAATGCCACCATATGAGAGGAAATCAGTTATG 1514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1881 TGCTTGGATGTTTCTAGACTCAATGGACCTGTAATCATGTTAAAATGCCACCATATGAGAGGAAATCAGTTATG 1954
Query 1515 GGAATATGATGCTG------------------------------AGTCTTGTCTCTCAGTGAACAAAGTAGCTG 1558
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1955 GGAATATGATGCTGAGACCCACACTCTTCTTCATATAATCACCCAGTCTTGTCTCTCAGTGAACAAAGTAGCTG 2028
Query 1559 ATGGCTCCCAGCATCCTACTGTGGAAACCTGTAATGATAGCACTTTGCAAAAATGGCTACTAAGAAACTATACA 1632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2029 ATGGCTCCCAGCATCCTACTGTGGAAACCTGTAATGATAGCACTTTGCAAAAATGGCTACTAAGAAACTATACA 2102
Query 1633 AGAATGGAAATTTTTAGAAATATTTTTGGGAATTCTACTGATTACATTCTC----------------------- 1683
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2103 AGAATGGAAATTTTTAGAAATATTTTTGGGAATTCTACTGATTACATTCTCTAATGATTTTTGGAGAGACTCAC 2176
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 2177 GTTGCGACATGTTAACAGTAACCAATGTCTCGATGAACCTTCTGAAGAAGACAAAATGGTGCCTACAATGCAGG 2250
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 2251 ACTGTAGTGGAAGCAGATCCCAACAGTGGCTGCTAAGGAACATGACCTTGGGCACATGAAGATCATGTCCTCCA 2324
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 2325 AGCCATGAAAGTGTCTACGCTTTTGTTTTTCCATTATTTCAATTGGGGGAAAATATTAACTTTGCTGAATTGAA 2398
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 2399 AGTTTTAAAAATCCTTTTAGTATTCTAAAACACAATTGTTTCTAATTCGTTTCTAGAAATGTTTGCTTATTTCC 2472
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 2473 CTACTAAAATTTGTATCTGATCAAAGCACATAAGAATATAAATAATAGCAAACTACTATTAAACAACAGAACAA 2546
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 2547 CTTGTAAAACAAATTGTGTTTGCTTTAAGAAAAATGTTTATTGCACTCATGTCATAGGGTTAATTGGAGGTTAT 2620
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 2621 TTTATTTTTGGTTGTCATGGTGATTGAAAGAGATAATGTAAATGCCTTATAAAATCTTCATTATGAAATATTAT 2694
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 2695 CAGTTGCTTTATAAACTCACTCTTTTTATGGATCCTTCATGGAAACATGTTTGATTTCTGTGTCTACAACAGGG 2768
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 2769 CCACATATTAAATTACTTCTGAATGGTGAATTCATCTTACAAAATGTTCCAAGTTTTGGACAAGGAAAAACATT 2842
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 2843 ACATTGGATATTGAATTCATGGAGCCTTTACAGAAGCATCACATTTAAACCAATGTGAATTCAAAAAAGAGAAG 2916
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 2917 GAAACTTTTTAAATTCAATTTAGAGTACATAAAAAAAGAAATCCGCGAAGCATTGAGGGGAACAAGATGAGTCT 2990
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 2991 AATCCGCAGCACTTCGATCACTGTGAGAGAACTCAAAGTGGGTTGCAATCATTCCTAACACAGGCTGAAACTAA 3064
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3065 ACAATCTTGCTCCTAGAGTTTATGTTGGATACTCAATTCTTAACCAAAATCTTGGTCTCCACAAACTCTACCAT 3138
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3139 CCCTTTTCTCTTCACTCTATAGACAGTGGCATGCCATTGATGCTGTACAGAATTGCAGGTGAAAGGGAGAATTT 3212
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3213 TAGACTTAATTTTTAACTCTATTGCACTTAAAGATTTTAGTTAGGTTACCACTGTCATTTTCATTTTCTATGTT 3286
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3287 AAAGAATACCTTTCAGTGCTGTGCTCCAGTATCTAAAAATTTTATCACCAGGGGAATAAACTCAATACACATTC 3360
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3361 ATTAAACTTTTGTTGTAATTAAACTGCTATATATTGTTTGCCATATATTATGGCCCAAGGAATATAGTTATAAT 3434
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3435 CAGGCTACATTCACATTTTCTTTTCTCATCTTAAAACCCTTTATGTTCAAAATACATTAGCAGAGGCCATGAAA 3508
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3509 GTGAAAAAAAATCAGATTTTTGCTAGTAAGTTTTTATATTTGACATCATTTTAAATGCTCAAAGAGTTGCCCTA 3582
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3583 TATATGCATGTTATCCATTATAAATGCACTCAGCAGCTAAGAGAAATTTGAGAGGAAAAGTGGAAGAAGTGTTT 3656
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3657 TCTGGAGCAGAAGATTCCACTTCTTTGGTCCTCATCTTTACTTAAAAAGCTCTTATAGAAAGGATTAATCATTT 3730
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3731 TGACTGCATACAAACTATGTCTCTGACATGCACATACACTGCTTTATAATGAAAATGAGGACACTTTCTGATGG 3804
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3805 TCAGTAAAATCTTAAATGATTTTTGCCACTGGTATTCCTTCCTCTTTTGACTTTTTATTGGTACAACTGTAGGG 3878
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3879 AAGAATCTACAACCTGGAGCATTTCAGGTTTGCTCTTTAAATATAGACACCCCTCACCATGAGCTCTCTGTGAA 3952
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 3953 TCCGTGAATTTCCTAAAATTGTAAGCAAAATGTTGAATATCAGGGCATTTTTTTTTCTGAGGTGGGAGTATGTC 4026
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4027 ACTCACAGCAAACTTGGAAAGAAGGCTATGACTCCCAAGAGGCAGTGAACCATTGCCTTAAATTAATAGCAGCC 4100
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4101 TCTCAAGTCCATTGAGGCCTCATGTAAAATTCCCATTTTTCATCTTTACACTCCTTTTCTCCCCTCATTTCCTC 4174
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4175 TTCTCCTTACTAAGGTAAAAAGACCCTGCACAGCATTATTACTTAAGTTGAAAAAGCTTCAACTCTCAAGGACT 4248
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4249 CATGTATACCATATGTTCCACTTATTGCTTTGTTAGTCAAAATGCATGTTATGTAGAAAATGGTCAATGGCAAA 4322
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4323 TTTTTATAAATACAGCTACCCCATCAAAGCTGAACTTGAAACGTTTTAGCAGAATTTTAAATATGTGAAAGTTC 4396
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4397 ATTGTGGTCATGGTGAGAAAACTAAAACTACATGAGTTTCATGTTAGAAAAGAATTTTTAAACAATCTTCAGAT 4470
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4471 GGCTTGAACACGTGCCATTATAGTATCTAACAAAAAGTGGCATAAAATATTACAAAACATCCAACACTAGAAAG 4544
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4545 CAATGACTAACATTTAATTTGTTTACAAAAATGTTTATTGTCTTCAGTACAAAAAGTTAAAACCATGATTGGAT 4618
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4619 TCATAATGCACTTGTCTTATCCCTTATTTATGGAGCTAGACTGACATATTTCAAACCAATCTCTTCTGTGGTCT 4692
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4693 TCTCCATCTCAGTTAATGCAACTTCAACCTTCCAGATGCTCAGGTCAAAAACTGAAAGTTGCTTTTGACTCCTC 4766
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4767 TATTTCTGTTTCAACTCTCGTCTAATCCAACAGCAAATCCCCTTGATGCTACCTTTGAAATATAACTAGAAAAG 4840
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4841 AATGACTTGCCACCATATCCACTAGGTGTCACTACCTCTAACCTTTTTAATCGCAATATGCTTATTATTTAGTT 4914
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4915 CCCTAATTTCCCAGTCCTTGTCTTGAACAATCTTTTCTCAGTACAACAGCCATAGTGATTCTGTTAACCATGAA 4988
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 4989 TTTGATTGTGTCACTTCCCTGCTCACAATCTTCCAATGACTTCTCCCTCCGGTGGCCTTCAAGGTCCTTTATGA 5062
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 5063 GTGTTACCCCTCTACACGTCCACACCACTCACCACACATACATACACATGCACACACACACACATGCAATTCTA 5136
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 5137 CCTTTTTCTAACACCATCTCTTATCTCTCATTATTCTGCCTCTTACTTACCCTATTATGGCTCCCAAGAAAGTT 5210
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 5211 CCTGCTTTAGTGTTTTGTTCCCTCTGCCCCAGAGAGCTCCCCTTAGTGATCTCAGTTCAAATATTATCTTATCA 5284
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 5285 GTAAGACAAACCCTTCTCCCATCTGCCTTCCCTATCCCCTGTACCTGACAATCTATGAGTTTGCTTCTTTATTT 5358
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 5359 CTGTCTATACTTCCCCCTCCCCAGCCCCAAACATGCCCATCACATGCCCTAGAAGGTAAGTCCCATGAAGGCAG 5432
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 5433 GGGCTTTGTCAGTTTTGTTCATTTGGTATTTCTGGCATATATATTCTCTAAATATTTCTTGAATTAATGAACTG 5506
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 5507 AAAAATGTGTGTTAAAGTTGCTAAGTGTAACTGTATCATACTTTTTTTGTATTTTAAATTTTAAAATAAAGGCT 5580
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 5581 AATATATTTAGACAGGATTTCCAAAAACTTTGTCTTCAAATTTTAATTTTCTTCCTAATATTCTTCACATTAAA 5654
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 5655 CTATGGACTCTAATTTTCTGGATAAAATATCCTGCCTTATGGAAATGAAATATGAAATTTTATTAAAATGCTGC 5728
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 5729 TATATTACATAAGTTGCTTCATTAAGCTAAAAATGGTTTTTATTTTTTGGTTGTGTCCAATGGCCACTTGAAGG 5802
Query 1684 -------------------------------------------------------------------------- 1683
Sbjct 5803 TATAAGATTTTGACTTTCAGAGGAGAGATATCACTGTCTTAAAAATTATGTATTTTCATGATTTCTTAAGAACT 5876
Query 1684 ----------------------------------------------------------- 1683
Sbjct 5877 ATTACTAAATTTATCTTCTAAGTGCAGTCAATGGAATAAACACAGAGATTTTTAAAGGA 5935
