Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13039
- Subject:
- XR_374098.3
- Aligned Length:
- 2533
- Identities:
- 1247
- Gaps:
- 1192
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGGTGCGCAGCGCCCCAGCCCGGGGAGGAGCGGGAGCCGGGCGGGAGGAGGACCGGGGTGCTGGTTACGTAAAT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GATCCTAGCCCAGTGACAGGCCTCCGGGCTGGGGCTGCGGGAGGGGGAGGGCCCGGCAGAGGGGGCGGGGGCCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGTGACCAGGCGGTGGCGGCTCTGCCGAGGTGACAATGTGCTAGGAGCCCCGCTCCGTGTCTCCTGCGCCTCCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGGCCTGGGCGCCTCCTGGCAGCGCTCTCGGAGCCTCGCGGCCGCTTGCCGCGCTATGAGGGAGCATCTCCGGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCTGGCCGAGGCCCGGGCCGCCTCGCTCTGCTCGCCGAGAAGTGTGAAGAGAGGCGCGGGCGGGAGCCGGGGCT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCGCGCGGCGGCGGCTCCAGGTGAGCGCGGCTCTCGGCGCAGCCGGCCACTGGTCGGGCTGGATCCAGGCAGCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCCCGTGCGCGGACCGCCGAGCTCTCTCCGCGGGATCGACAGCCACCGTAGCAGACATATTTTTTAGGAGTTTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TTGAAGATGGATATTTTCAAATCATTTTGAAACAGTCAAACACCATATACATGGGATGCATCTTGCTTTTGTCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGGAGATCACCTCTGTGGCTTGGATATATCTCAGGAACACCCGTCTTCAGTCTCCGTATTGATTAGTAATCAAG 666
Query 1 -ATGAGGAGATTTGTCTACTGCAAGGTGGTTCTAGCCACTTCGCTGATGTGGGTTCTTGTTGATGTCTTCTTAC 73
||||||||||||||||||||||||||||||||.||||||||.|||||||||||.|||||||||||||||||||
Sbjct 667 CATGAGGAGATTTGTCTACTGCAAGGTGGTTCTGGCCACTTCTCTGATGTGGGTGCTTGTTGATGTCTTCTTAC 740
Query 74 TGCTGTACTTCAGTGAATGTAACAAATGTGATGACAAGAAGGAGAGATCTCTGCTGCCTGCATTGAGGGCTGTT 147
|.|||||||||||.||.||||||||.|||||||||||||||||||||||.|||||||||||..|||||||||||
Sbjct 741 TCCTGTACTTCAGCGAGTGTAACAAGTGTGATGACAAGAAGGAGAGATCCCTGCTGCCTGCGCTGAGGGCTGTT 814
Query 148 ATTTCAAGAAACCAAGAAGGGCCAGGAGAAATGGGAAAAGCTGTGTTGATTCCTAAAGATGACCAGGAGAAAAT 221
||||||||||||||||||||.|||||||||||||||||.||||||.|.|||||.|||||||||||.||||||||
Sbjct 815 ATTTCAAGAAACCAAGAAGGTCCAGGAGAAATGGGAAAGGCTGTGCTTATTCCAAAAGATGACCAAGAGAAAAT 888
Query 222 GAAAGAGCTGTTTAAAATCAATCAGTTTAACCTTATGGCCAGTGATTTGATTGCCCTTAATAGAAGTCTGCCAG 295
|||||||.|||||||||||||||||||||||||.|||||||||||.|||||.||.|||||..||||||||||.|
Sbjct 889 GAAAGAGTTGTTTAAAATCAATCAGTTTAACCTCATGGCCAGTGACTTGATCGCACTTAACCGAAGTCTGCCGG 962
Query 296 ATGTAAGATTAGAAG----------------------------------------------------------- 310
||||.||||||||||
Sbjct 963 ATGTGAGATTAGAAGGACAGTACTGTTGTGGTAGATGTGAAGAACTTCAAACAATGCAGCAAGAAAGATATGCT 1036
Query 311 -------------------------------------------------------------------GATGTAA 317
||||.||
Sbjct 1037 AGAGTTTACATCTCTACCAACTTCTGCTCCAGTATCCTCTTCTGGTTGAAATGTAACACTGAGTTGAGATGCAA 1110
Query 318 GACAAAAGTCTACCCTGATGAACTTCCAAACACAAGTGTAGTCATTGTGTTTCATAATGAAGCTTGGAGCACTC 391
|||.|||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct 1111 GACTAAAGTCTACCCTGATGAACTTCCAAACACAAGTGTAGTCATTGTGTTCCATAATGAAGCTTGGAGCACTC 1184
Query 392 TCCTTAGAACTGTTTACAGTGTGATAAATCGTTCCCCACACTATCTACTCTCAGAGGTCATCTTGGTAGATGAT 465
|.|||||||||||.||.|||||.||||||||.|||||||||||.||.|||||.||||||||||||||.||||||
Sbjct 1185 TACTTAGAACTGTCTATAGTGTCATAAATCGCTCCCCACACTACCTGCTCTCTGAGGTCATCTTGGTTGATGAT 1258
Query 466 GCCAGTGAAAGAGATTTTCTCAAGTTGACATTAGAGAATTACGTGAAAAATTTAGAAGTGCCAGTAAAAATTAT 539
||||||||||||||||||||||||||||||||||||||.||||||||||.|||||||||||||||.||.|||||
Sbjct 1259 GCCAGTGAAAGAGATTTTCTCAAGTTGACATTAGAGAACTACGTGAAAACTTTAGAAGTGCCAGTGAAGATTAT 1332
Query 540 TAGGATGGAAGAACGCTCTGGGTTAATACGTGCCCGTCTTCGAGGAGCAGCTGCTTCAAAAGGGCAGGTCATAA 613
.|||||||||||.|||||||||||||||||.||||||||.|||||||||||.|||||||||||.||||||||||
Sbjct 1333 CAGGATGGAAGAGCGCTCTGGGTTAATACGCGCCCGTCTCCGAGGAGCAGCAGCTTCAAAAGGACAGGTCATAA 1406
Query 614 CTTTTCTTGATGCACACTGTGAATGCACGTTAGGATGGCTGGAGCCTTTGCTGGCAAGAATAAAGGAAGACAGG 687
|||||||.|||||||||||.||.|||||.|||||||||||||||||.||||||||.||||||||||||||||||
Sbjct 1407 CTTTTCTGGATGCACACTGCGAGTGCACCTTAGGATGGCTGGAGCCCTTGCTGGCGAGAATAAAGGAAGACAGG 1480
Query 688 AAAACGGTTGTCTGCCCTATCATTGATGTGATTAGTGATGATACTTTTGAATATATGGCTGGGTCAGACATGAC 761
|||||.|||||.|||||.|||||||||||.||||||||||||||.|||||.||.||||||||||||||||||||
Sbjct 1481 AAAACAGTTGTGTGCCCGATCATTGATGTTATTAGTGATGATACGTTTGAGTACATGGCTGGGTCAGACATGAC 1554
Query 762 TTATGGGGGTTTTAACTGGAAACTGAATTTCCGCTGGTATCCTGTTCCCCAAAGAGAAATGGACAGGAGGAAAG 835
||||||.|||||.||||||||.||.||||||||.|||||||||||.||.||||||||||||||.|||||.||||
Sbjct 1555 TTATGGTGGTTTCAACTGGAAGCTAAATTTCCGATGGTATCCTGTCCCTCAAAGAGAAATGGATAGGAGAAAAG 1628
Query 836 GAGACAGAACATTACCTGTCAGGACCCCTACTATGGCTGGTGGCCTATTTTCTATTGACAGAAACTACTTTGAA 909
|||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GAGACAGGACATTACCTGTCAGGACCCCTACTATGGCTGGTGGCCTATTTTCTATTGACAGAAACTACTTTGAA 1702
Query 910 GAGATAGGAACTTACGATGCAGGAATGGATATCTGGGGTGGAGAGAATCTTGAAATGTCTTTTAGGATTTGGCA 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 1703 GAGATAGGAACTTACGATGCAGGAATGGATATCTGGGGTGGAGAGAATCTTGAAATGTCTTTTAGGATCTGGCA 1776
Query 984 ATGTGGAGGCTCCTTGGAGATTGTTACTTGCTCCCATGTTGGTCATGTTTTTCGGAAGGCAACTCCATACACTT 1057
|||||||||.||.|||||||||||.||||||||.|||||.||||||||||||||.|||||||||||||||||.|
Sbjct 1777 ATGTGGAGGTTCTTTGGAGATTGTGACTTGCTCTCATGTCGGTCATGTTTTTCGAAAGGCAACTCCATACACAT 1850
Query 1058 TTCCTGGTGGCACTGGTCATGTCATCAACAAGAACAACAGGAGACTGGCAGAAGTTTGGATGGATGAATTTAAA 1131
|.||||||||||||||.||||||||.||||||||||||||.||||||||||||||.||||||||||||||.|||
Sbjct 1851 TCCCTGGTGGCACTGGCCATGTCATTAACAAGAACAACAGAAGACTGGCAGAAGTGTGGATGGATGAATTCAAA 1924
Query 1132 GATTTCTTCTACATCATATCCC---------------------------------------------------- 1153
|||||||||||.||||||||||
Sbjct 1925 GATTTCTTCTATATCATATCCCCAGGGTCGTCAAAAACAACCTGACTTTGAGAATGCAATTTTCAAACCACTTA 1998
Query 1154 -----CAGGTGTTGTCAAAGTGGATTATGGAGATGTGTCAGTCAGAAAAACACTAAGAGAAAATCTGAAGTGTA 1222
|||||||||||||||||||||||||||||||||||||||||||||||||.||.||||||||||||||||
Sbjct 1999 GAAAGCAGGTGTTGTCAAAGTGGATTATGGAGATGTGTCAGTCAGAAAAACACTGAGGGAAAATCTGAAGTGTA 2072
Query 1223 AGCCCTTTTCTTGGTACCTAGAAAACATCTATCCGGACTCCCAGATCCCAAGACGTTATTACTCACTTGGTGAG 1296
||||.||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 AGCCTTTTTCTTGGTACCTGGAAAACATCTATCCGGACTCCCAGATCCCAAGACGTTATTACTCACTTGGTGAG 2146
Query 1297 ATAAGAAATGTTGAAACCAATCAGTGTTTAGACAACATGGGCCGCAAGGAAAATGAAAAAGTGGGTATATTCAA 1370
|||.||||||||||.||||||||.||.|||||.||||||||||||
Sbjct 2147 ATACGAAATGTTGAGACCAATCAATGCTTAGATAACATGGGCCGC----------------------------- 2191
Query 1371 CTGTCATGGTATGGGAGGAAATCAGGTATTTTCTTACACTGCTGACAAAGAAATCCGAACCGATGACTTGTGCT 1444
Sbjct 2192 -------------------------------------------------------------------------- 2191
Query 1445 TGGATGTTTCTAGACTCAATGGACCTGTAATCATGTTAAAATGCCACCATATGAGAGGAAATCAGTTATGGGAA 1518
Sbjct 2192 -------------------------------------------------------------------------- 2191
Query 1519 TATGATGCTGAGTCTTGTCTCTCAGTGAACAAAGTAGCTGATGGCTCCCAGCATCCTACTGTGGAAACCTGTAA 1592
Sbjct 2192 -------------------------------------------------------------------------- 2191
Query 1593 TGATAGCACTTTGCAAAAATGGCTACTAAGAAACTATACAAGAATGGAAATTTTTAGAAATATTTTTGGGAATT 1666
Sbjct 2192 -------------------------------------------------------------------------- 2191
Query 1667 CTACTGATTACATTCTC 1683
Sbjct 2192 ----------------- 2191
