Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13049
Subject:
NM_001166413.1
Aligned Length:
1831
Identities:
1235
Gaps:
413

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGAGCAGTCGCAAGGATCCATAAATTCAGTTACGAGGGCCATATGCCAAGTTCTGGTTGACGCTTTCAGACC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCCGGAGAGAGATCCCTTAGGGCCTGGGAGTACCAAGACAGAGAGTGATTGTATCGAGGAGGATCAGACAGGGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGCGCGAACCTGAGGTCCTCGCCTGGGCTCCGCAGCCCGAATCCTATTCTATTGCCGTCAGTGAGGGGAGCATG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TCAGCGTCTGCTGTCTCGGGGCTGGCTGCCCTGTCTGGCCCCAGCTCTGGCCTCAGCTCTGATCCGTGTTCTCC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GATTCCCCCTGGACCAGTAACTGGCCTGAGGAGATGGTTGGATCATTCCAAACATTGTCTCAGTGTGGAAACTG  370

Query    1  -------------------------ATGT-------------TGGAGCCAGCTCTAGCCACAGGAGAGGAGCTG  36
                                     ||||             ||||||||.||.||.||||||||.|.||||||
Sbjct  371  AGGCAGAGAGTGGTCAGACCGGACAATGTGAGAACTGGACGCTGGAGCCAACTTTAACCACAGGACAAGAGCTG  444

Query   37  CCGGAACTGACCTTGCTGACCACACTGTTGGAGGGCCCTGGAGATAAGACGCAGCCACCTGAAGAGGAGACTTT  110
            ||.|||||||||||.|||||.|||.||.|||||||.||||||||.|||.|.||||||.||||||||||.|||||
Sbjct  445  CCCGAACTGACCTTACTGACTACATTGCTGGAGGGTCCTGGAGACAAGGCACAGCCAGCTGAAGAGGAAACTTT  518

Query  111  GTCCCAAGCCCCTGAGAGTGAGGAGGAACAGAAGAAGAAGGCTCTGGAAAGGAGTATGTATGTCCTGAGTGAAC  184
            |||||||||.||..|||.||||||.||.||||||||||.||||||||||||||||||||.|||||||.||||.|
Sbjct  519  GTCCCAAGCTCCCAAGAATGAGGAAGAGCAGAAGAAGATGGCTCTGGAAAGGAGTATGTTTGTCCTGGGTGAGC  592

Query  185  TGGTAGAAACAGAGAAAATGTACGTGGACGACTTGGGGCAGATTGTGGAGGGTTATATGGCCACCATGGCTGCT  258
            ||||.||||||||.|.||..||.||||||||||||||.|||||.||.||||||||.|||||.|||||||||.||
Sbjct  593  TGGTGGAAACAGAAAGAACATATGTGGACGACTTGGGACAGATCGTAGAGGGTTACATGGCTACCATGGCTACT  666

Query  259  CAGGGGGTCCCCGAGAGTCTTCGAGGCCGTGACAGGATTGTGTTTGGGAATATCCAGCAAATCTATGAGTGGCA  332
            ||||||||.||.||||||||.|||||.|||||||||||||||||||||||.||.|||||.||||||||||||||
Sbjct  667  CAGGGGGTACCTGAGAGTCTCCGAGGTCGTGACAGGATTGTGTTTGGGAACATTCAGCAGATCTATGAGTGGCA  740

Query  333  CCGAGACTATTTCTTGCAAGAGCTACAACGGTGTCTGAAAGATCCTGATTGGCTGGCTCAGCTATTCATCAAAC  406
            |||||||||.|||.||||.|||||.||.|.||||.||||||||||.||||||.||||||||||.||||||||||
Sbjct  741  CCGAGACTACTTCCTGCAGGAGCTGCAGCAGTGTTTGAAAGATCCCGATTGGTTGGCTCAGCTGTTCATCAAAC  814

Query  407  ACGAGCGCCGGCTGCATATGTATGTGGTGTACTGTCAGAATAAGCCCAAGTCAGAGCATGTGGTGTCAGAGTTT  480
            |.||||||||.|||||||||||||||||||||||.||||||||.||||||||||||||||||.|||||||||||
Sbjct  815  ATGAGCGCCGACTGCATATGTATGTGGTGTACTGCCAGAATAAACCCAAGTCAGAGCATGTGCTGTCAGAGTTT  888

Query  481  GGGGACAGCTACTTTGAGGAGCTCCGGCAGCAGCTGGGGCACCGCCTGCAGCTGAACGACCTCCTCATCAAACC  554
            |||||||||||||||||||||||..|||||||||||||.|||||.||||||||.||.|||||||||||.|||||
Sbjct  889  GGGGACAGCTACTTTGAGGAGCTGAGGCAGCAGCTGGGACACCGACTGCAGCTCAATGACCTCCTCATTAAACC  962

Query  555  TGTGCAGCGGATCATGAAATACCAGCTGCTGCTCAAGGATTTTCTCAAGTATTACAATAGAGCTGGGATGGATA  628
            .||||||||.|||||||||||||||.|||||||.|||||||||||.||||||||||..||||||||||.|||||
Sbjct  963  AGTGCAGCGAATCATGAAATACCAGTTGCTGCTGAAGGATTTTCTAAAGTATTACAGAAGAGCTGGGAAGGATA  1036

Query  629  CTGCAGACCTAGAGCAAGCTGTGGAGGTCATGTGCTTTGTGCCCAAGCGCTGCAACGATATGATGACGCTGGGG  702
            |||.|||.||.|||||||||||||||||||||||.||.||.||.|||||.|||||.|||||||||.|.||||||
Sbjct 1037  CTGAAGAGCTGGAGCAAGCTGTGGAGGTCATGTGTTTCGTACCTAAGCGATGCAATGATATGATGTCCCTGGGG  1110

Query  703  AGATTGCGGGGATTTGAGGGCAAACTGACTGCTCAGGGGAAGCTCTTGGGCCAGGACACTTTCTGGGTCACCGA  776
            |||.|.||||||||||||||.||||||||||||||||||||||||||||||||||||||.||||.|||.||.||
Sbjct 1111  AGACTTCGGGGATTTGAGGGAAAACTGACTGCTCAGGGGAAGCTCTTGGGCCAGGACACATTCTTGGTTACAGA  1184

Query  777  GCCTGAGGCTGGAGGGCTGCTATCTTCCCGAGGTCGAGAGAGGCGCGTCTTCCTCTTTGAGCAAATCATCATCT  850
            ||||||.|||||.||.|||||.||||||||.|||||.||||||||.||||||||.||.||||||||||||||||
Sbjct 1185  GCCTGAAGCTGGGGGTCTGCTTTCTTCCCGGGGTCGGGAGAGGCGTGTCTTCCTGTTCGAGCAAATCATCATCT  1258

Query  851  TCAGTGAAGCCCTGGGAGGAGGAGTGAGAGGTGGAACACAGCCTGGATATGTATACAAGAACAGCATTAAGGTG  924
            |||||||.||||||||||||||||...|||||||..|.||||||||.||.||.||||||||||||||.||||||
Sbjct 1259  TCAGTGAGGCCCTGGGAGGAGGAGGCCGAGGTGGCGCGCAGCCTGGCTACGTGTACAAGAACAGCATCAAGGTG  1332

Query  925  AGCTGCCTGGGACTGGAGGGGAACCTCCAAGGTGACCCTTGCCGCTTTGCACTGACCTCCAGAGGGCCAGAGGG  998
            ||||||||.||.|||||||||||.||||||||..||||||||||.|||||.||||||||.|||||||||||.||
Sbjct 1333  AGCTGCCTAGGGCTGGAGGGGAATCTCCAAGGCAACCCTTGCCGGTTTGCGCTGACCTCTAGAGGGCCAGAAGG  1406

Query  999  TGGGATCCAGCGCTATGTCCTGCAGGCTGCAGACCCTGCTATCAGTCAGGCCTGGATCAAGCATGTGGCTCAGA  1072
            |||||||||||||||.||.|||||||||.|||||||||||.|||||||.||||||||.|||||.|||||.||||
Sbjct 1407  TGGGATCCAGCGCTACGTTCTGCAGGCTTCAGACCCTGCTGTCAGTCAAGCCTGGATAAAGCAAGTGGCCCAGA  1480

Query 1073  TCTTGGAGAGCCAACGGGACTTCCTCAACGCATTGCAGTCACCCATTGAGTACCAGAGACGGGAGAGCCAGACC  1146
            ||.||||.|||||.||.|||||.|||||||||||.||||||||||||||.|||||||||||.||||||||||||
Sbjct 1481  TCCTGGAAAGCCAGCGTGACTTTCTCAACGCATTACAGTCACCCATTGAATACCAGAGACGTGAGAGCCAGACC  1554

Query 1147  AACAGCCTGGGGCGGCCAAGAGGGCCTGGAGTGGGGAGCCCTGGAAGAATTCGGCTTGGAGATCAGGCCCAGGG  1220
            ||.|||||||||||.|||.||||||||.|.||.|||||||||||.|||||.||||.||||||.|.||||||||.
Sbjct 1555  AATAGCCTGGGGCGACCAGGAGGGCCTTGGGTAGGGAGCCCTGGGAGAATGCGGCCTGGAGACCTGGCCCAGGC  1628

Query 1221  CAGCACACACACACCCATCAATGGCTCTCTCCCCTCTCTGCTGCTGTC-ACCCAAAGGGGAGGTGGCCAGAGCC  1293
            |||||..||||||||||||||||||||||||||.||.|||||.|| || .||||.||||||||||.||||||..
Sbjct 1629  CAGCATGCACACACCCATCAATGGCTCTCTCCCTTCCCTGCTACT-TCTGCCCAGAGGGGAGGTGTCCAGAGTG  1701

Query 1294  CTCTTGCCACTGGATAAACAGGCCCTTGGTGACATCCCCCAGGCTCCCCATGACTCTCCTCCAGTCTCTCCAAC  1367
            ||.|||||.|||||||.||||||.||..||||.|.|||||||.||||.|||||||   ||||||.|..|||.||
Sbjct 1702  CTGTTGCCCCTGGATACACAGGCTCTCAGTGATACCCCCCAGACTCCTCATGACT---CTCCAGCCCTTCCCAC  1772

Query 1368  TCCAAAAACCCCTCCCTGCCAAGCCAGACTTGCCAAGCTGGATGAAGATGAGCTG  1422
            |...||.||.||||||||.||.|||||.||.||||||||||||||||||||||||
Sbjct 1773  TGTGAACACTCCTCCCTGTCAGGCCAGGCTCGCCAAGCTGGATGAAGATGAGCTG  1827

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