Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13088
- Subject:
- XM_006516391.3
- Aligned Length:
- 2169
- Identities:
- 1246
- Gaps:
- 696
Alignment
Query 1 ATGGCTGAAGAAGAGGAAACTGCTGCTCTCACGGAGAAGGTTATCCGGACCCAGAGGGTGTTTATAAACCTGTT 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 GGATTCCTACAGCAGCGGAAACATCGGGAAGTTTCTATCTAACTGTGTAGTTGGGGCTTCGCTTGAAGAAATTA 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 CAGAGGAAGAGGAAGAGGAAGATGAAAATAAGTCAGCTATGCTGGAAGCTTCCTCAACCAAGGTGAAGGAAGGC 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 ACATTCCAGATTGTGGGCACGCTGTCCAAGCCTGACAGCCCGCGGCCTGACTTTGCGGTGGAGACGTACTCTGC 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 CATCTCTCGAGAAGACCTTCTCATGCGCCTGCTGGAGTGTGATGTTATTATTTATAACATCACTGAGAGCTCAC 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 AGCAAATGGAGGAAGCCATCTGGGCAGTCTCTGCACTCAGTGAAGAAGTCAGCCACTTTGAAAAGCGAAAGCTA 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 TTTATTTTACTGTCGACGGTGATGACTTGGGCGCGCTCCAAAGCCCTGGACCCCGAGGATTCTGAGGTTCCATT 518
.||||| ||....||||||||.||
Sbjct 1 ---------------------------------------------ATGGAC------GACAACGAGGTTCCCTT 23
Query 519 CACTGAAGAAGATTATCGAAGAAGAAAGTCTCATCCTAATTTTCTGGACCACATAAATGCTGAAAAAATGGTTC 592
|||.|||||.||||||||||||||.||...|||.||.||.||.||||||||.||.||.|||||||||||.||||
Sbjct 24 CACAGAAGAGGATTATCGAAGAAGGAAACATCACCCCAACTTCCTGGACCATATCAACGCTGAAAAAATTGTTC 97
Query 593 TCAAATTTGGAAAAAAGGCCAGAAAATTTGCAGCATACGTAGTTGCTGCTGGACTCCAGTATGGAGCGGAAGGA 666
||||||||||||||||.||||.|||.||.|||.|.||.|||||.||..|.|||||.|||||||||||.||||||
Sbjct 98 TCAAATTTGGAAAAAATGCCAAAAAGTTCGCAACTTATGTAGTCGCCTCAGGACTTCAGTATGGAGCAGAAGGA 171
Query 667 GGCATGTTACACACATTTTTTAAGATGGCTTGGTTGGGCGAGATTCCTGCATTACCAGTTTTTGGCGATGGAAC 740
|||||.||||||||.||||||||||||||.|||.||||||||.|.||.|||.||||.||.|||||.|||||.||
Sbjct 172 GGCATCTTACACACGTTTTTTAAGATGGCCTGGCTGGGCGAGGTCCCCGCACTACCCGTGTTTGGAGATGGGAC 245
Query 741 AAATGTAATTCCAACAATCCATGTTCTTGATCTAGCAGGAGTGATACAAAACGTCATAGATCACGTGCCAAAGC 814
.|||...|||||..|.||.||||||.||||.||.|||||||||||.||.|||.|||||||.||||||||.||||
Sbjct 246 CAATTGCATTCCGGCCATTCATGTTGTTGACCTCGCAGGAGTGATCCAGAACATCATAGACCACGTGCCCAAGC 319
Query 815 CTCACTACCTGGTTGCTGTGGATGAGTCTGTTCATACCCTGGAAGACATAGTCAAGTGTATCAGTAAAAATACT 888
.||||||||||||.||||||||||||.||||.||.|||.||||||||.|.||||||||.|||||.||||||||.
Sbjct 320 TTCACTACCTGGTGGCTGTGGATGAGGCTGTGCACACCTTGGAAGACCTGGTCAAGTGCATCAGCAAAAATACC 393
Query 889 GGCCCTGGGAAAATCCAGAAAATACCCAGAGAAAATGCATACCTAACCAAGGACTTAACGCAAGATTGTCTTGA 962
||||||||.||.|||||||||.|.||||.|||||||||.|.|||.||.||||||||.||.|||||.|..||.||
Sbjct 394 GGCCCTGGAAAGATCCAGAAAGTGCCCAAAGAAAATGCTTTCCTGACAAAGGACTTGACACAAGAGTACCTCGA 467
Query 963 CCATTTACTGGTCAACTTGAGAATGGAAGCGCTCTTTGTGAAGGAGAATTTTAATATTCGATGGGCTGCCCAAA 1036
|||..|.|||||||||.|||||||||||||.||.||||||||||||||.|||||.||.||.||||..|||||||
Sbjct 468 CCACCTGCTGGTCAACCTGAGAATGGAAGCCCTGTTTGTGAAGGAGAACTTTAACATCCGCTGGGTCGCCCAAA 541
Query 1037 CAGGATTTGTGGAAAATATCAACACTATCCTCAAGGAGTACAAGCAAAGCAGAGGATTGATGCCAATCAAGATC 1110
||||.||.|||||.||.|||||||..||||||||.|||||||||||||||.|.|||||..||||||||||||||
Sbjct 542 CAGGCTTCGTGGAGAACATCAACAGCATCCTCAAAGAGTACAAGCAAAGCCGGGGATTACTGCCAATCAAGATC 615
Query 1111 TGCATTCTTGGTCCCCCTGCTGTGGGAAAATCCAGTATTGCTAAAGAATTGGCCAAGTACTACAAACTGCATCA 1184
|||||.||||||||.||||||||||||||||||||.||..||.||||..|||||||||||||||||||||||||
Sbjct 616 TGCATCCTTGGTCCTCCTGCTGTGGGAAAATCCAGCATCTCTGAAGAGCTGGCCAAGTACTACAAACTGCATCA 689
Query 1185 CATCCAACTGAAGGATGTCATTTCTGAAGCCATAGCAAAACTGGAGGCGATTGTTGCCCCTAACGATGTAGGGG 1258
||||.|..||||||||||.|||.|||||||||||||.|||||||||||||||||.||.||.||.||...||.||
Sbjct 690 CATCAAGATGAAGGATGTGATTGCTGAAGCCATAGCCAAACTGGAGGCGATTGTCGCACCCAAGGACTCAGTGG 763
Query 1259 AAGGAGAAGAAGAAGTCGAAGAGGAAGAGGAGGAGGAGAATGTGGAAGATGCACAGGAGCTCCTAGATGGCATC 1332
||||||||||.||||.|||||||||.||||||||.|||||.|||||.|||||.|||||||||||.|||||||||
Sbjct 764 AAGGAGAAGAGGAAGGCGAAGAGGAGGAGGAGGAAGAGAACGTGGATGATGCCCAGGAGCTCCTTGATGGCATC 837
Query 1333 AAGGAGAGCATGGAGCAGAATGCAGGTCAACTAGACGATCAATATATAATTAGATTTATGAAAGAAAAGCTAAA 1406
|||||.||||||||||||||.|||||||..|||||.||.||||||||||||.|||||.|||||||||||||.||
Sbjct 838 AAGGAAAGCATGGAGCAGAACGCAGGTCGGCTAGAAGACCAATATATAATTCGATTTGTGAAAGAAAAGCTCAA 911
Query 1407 ATCAATGCCTTGCAGGAATCAAGGTTATATTTTGGATGGATTCCCAAAGACCTATGATCAAGCAAAAGACCTGT 1480
|||.||||||||.|||||.|||||||..|||||||||||.|||||||||||||||||||||||.||||||||||
Sbjct 912 ATCTATGCCTTGTAGGAACCAAGGTTTCATTTTGGATGGCTTCCCAAAGACCTATGATCAAGCGAAAGACCTGT 985
Query 1481 TCAATCAGGAAGATGAGGAGGAGGAAGATGATGTCAGAGGCAGAATGTTTCCCTTTGATAAATTAATTATACCT 1554
||||.||||||||.||.|||||.|||||.||..|||||||||.|||.|||||||.||||||||||||||.|||.
Sbjct 986 TCAACCAGGAAGAGGAAGAGGAAGAAGAAGAAATCAGAGGCAAAATATTTCCCTATGATAAATTAATTACACCC 1059
Query 1555 GAATTCGTTTGTGCACTGGATGCTTCGGATGAGTTTCTGAAGGAGCGTGTGATAAACCTTCCTGAGAGCATCGT 1628
||.||.||.||.|..|||||.||.||.||||||||.|||||||||||.|||||.||.||.||.|||||..||||
Sbjct 1060 GAGTTTGTGTGCGGTCTGGACGCATCTGATGAGTTCCTGAAGGAGCGGGTGATGAATCTCCCGGAGAGTGTCGT 1133
Query 1629 GGCGGGGACCCACTACAGCCAAGACCGATTCCTCCGGGCTCTGAGCAACTACCGGGACATCAATATCGACGATG 1702
|||.||.||.|||||||||||.|||||||||||||||.||||||||.||||||||||||||||||..||.||||
Sbjct 1134 GGCAGGAACTCACTACAGCCAGGACCGATTCCTCCGGTCTCTGAGCCACTACCGGGACATCAATACAGATGATG 1207
Query 1703 AGACTGTCTTCAACTATTTTGATGAACTTGAAATTCACCCGATACATATTGATGTAGGAAAACTTGAAGATGCT 1776
||||.|||||||||||.||.||.||.|||||||||||||||||||||||.||||||||||||||||||||.||.
Sbjct 1208 AGACGGTCTTCAACTACTTCGACGAGCTTGAAATTCACCCGATACATATCGATGTAGGAAAACTTGAAGACGCC 1281
Query 1777 CAGAATAGACTTGCTATCAAACAGCTCATCAAAGAGACTGGGGAGCCTCGAAATTATGGTTTAACAGACGAAGA 1850
|||||.|||||||||||||||||||||||||||||||..|||.|||||||.|||||.||.||||||||||||||
Sbjct 1282 CAGAACAGACTTGCTATCAAACAGCTCATCAAAGAGATCGGGAAGCCTCGGAATTACGGCTTAACAGACGAAGA 1355
Query 1851 AAAGGCAGAAGAGGAGCGGAAGGCTGCGGAGGAGCGGCTGGCCAGGGAGGCTGCTGAGGAAGCAGAACGCGAGC 1924
|||||||||.||||||..|||.||.||||||||.||.|||||||.||||||||||.||...|||||||.|||.|
Sbjct 1356 AAAGGCAGAGGAGGAGAAGAAAGCAGCGGAGGAACGCCTGGCCAAGGAGGCTGCTCAGACGGCAGAACTCGAAC 1429
Query 1925 ACCAGGAGGCCGTGGAGATGGCAGAGAAGATAGCTCGCTGGGAG------------------------------ 1968
||.||||||||.||||||||||.|||||||||||.|||||||||
Sbjct 1430 ACAAGGAGGCCATGGAGATGGCGGAGAAGATAGCCCGCTGGGAGGAGTGGAATAAACGGCTGGAGGAAGTAAAG 1503
Query 1969 -------------------------------------------------------------------------- 1968
Sbjct 1504 CGAGAGGAGAGGGAGCTGCTGGAGGTACAGTCCGTCCCCCTGAGAAACTACCTGATGACGTACGTGATGCCCAC 1577
Query 1969 -------------------------------------------------------------------------- 1968
Sbjct 1578 GCTCATGCAGGGCCTCAATGAATGCTGCAAGGTGAGACCCGAAGACCCCGTGGATTTTCTGGCAGAGTATCTCT 1651
Query 1969 ----------------------- 1968
Sbjct 1652 TCAAGAACAATCCTGAAATGCAG 1674
