Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13136
Subject:
NM_001201483.4
Aligned Length:
1302
Identities:
813
Gaps:
417

Alignment

Query    1  ATGTCTATTCTCAAGATCCATGCCAGGGAGCTCTTTGACTCTCGTGGGAATCCCACTGTTGAGGTTGATCTCTT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CACCTCAGAAGGTCTCTTCAGAGCTGCTGTGCCCAGTGGTGCTTCAACTGGTATCTATGAGGTCCTAGAGCTCC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AGGACAATGATAAGACTCGCTATATGGGGAAGGGTGTCTCAAAGCCTGTTGAGCCCATCAATAAAACTATTGCA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  CCTGTCCTGGTTAGCAAGAAACTGAACGTCACAGAACAAGAGAAGATTGACAAACTTATGATAGAGATGGATGG  296
                                                                     |||||.|||||||||||
Sbjct    1  ---------------------------------------------------------ATGATCGAGATGGATGG  17

Query  297  AACAGAAAATAAATCTAAATTTGGTGCAAATGCCATTCTGGGAGTGTCCCTCGCTGCCTGCAAAGCTAGTGCTG  370
            ||||||||||||||||||.||||||||.||.|||||||||||.||||||||.||.|.||||||||||.||||.|
Sbjct   18  AACAGAAAATAAATCTAAGTTTGGTGCGAACGCCATTCTGGGGGTGTCCCTTGCCGTCTGCAAAGCTGGTGCCG  91

Query  371  TTGAGAAGGGGGTTCCCCTGTACCACCACATCGCCGACTTGTCTGGCAACTCCAAAGTCATCTTGCCAGTCCCG  444
            |||||||||||||.||||||||||.|||||||||.||||||.||||||||||..||||||||.|||||||||||
Sbjct   92  TTGAGAAGGGGGTCCCCCTGTACCGCCACATCGCTGACTTGGCTGGCAACTCTGAAGTCATCCTGCCAGTCCCG  165

Query  445  GTGTTCAATGTCATCAATGGCAGTTCTCATGCTGTCACCAAGCTGGCCATGCAGGAGTTCATGGTCCTCCCAGT  518
            |.|||||||||||||||||||.||||||||||||.||.|||||||||||||||||||||||||.||||||||||
Sbjct  166  GCGTTCAATGTCATCAATGGCGGTTCTCATGCTGGCAACAAGCTGGCCATGCAGGAGTTCATGATCCTCCCAGT  239

Query  519  CGGTGCAGCAAACTTCAGGGAAGCCATGCCCATTGGAGCGGAGGTTTACCACAGCCTGAAGAATGTCATCAAGG  592
            |||||||||||||||||||||||||||||.|||||||||.|||||||||||||.||||||||||||||||||||
Sbjct  240  CGGTGCAGCAAACTTCAGGGAAGCCATGCGCATTGGAGCAGAGGTTTACCACAACCTGAAGAATGTCATCAAGG  313

Query  593  AGAAATATGGGAAAGATGCCACCGGTGTGGGGGATGGAGGCGCGTTTGCTCCCAACATCCTGGAGAATAAAGAA  666
            |||||||||||||||||||||||..|||||||||||.|||||.|||||||||||||||||||||||||||||||
Sbjct  314  AGAAATATGGGAAAGATGCCACCAATGTGGGGGATGAAGGCGGGTTTGCTCCCAACATCCTGGAGAATAAAGAA  387

Query  667  GGCCTGGAGCTGCTGAAGACTGCGATTGGGAAAGCTGGCTACACTGATAAGGTGATCGTCAGCATGGACGTAGA  740
            |||||||||||||||||||||||.||||||||||||||||||||||||||||||.||.||.||||||||||||.
Sbjct  388  GGCCTGGAGCTGCTGAAGACTGCTATTGGGAAAGCTGGCTACACTGATAAGGTGGTCATCGGCATGGACGTAGC  461

Query  741  GGCCTCCGAGTTCTTCAGGTCTGGAAAGTATGACCTGGAATTCAAGTTTCTCGACGACCCCACCAGGTACATCT  814
            ||||||||||||||||||||||||.||||||||||||||.|||||||.||.|||.|||||||.|||||||||||
Sbjct  462  GGCCTCCGAGTTCTTCAGGTCTGGGAAGTATGACCTGGACTTCAAGTCTCCCGATGACCCCAGCAGGTACATCT  535

Query  815  CACCTGACTGTCTGGCTGACCTGTACAAGTCCTTCATCAAAAACTACCCAGTGGTGTCTACTGAAGATCCCTTT  888
            |.||||||...|||||||||||||||||||||||||||||..||||||||||||||||||..||||||||||||
Sbjct  536  CGCCTGACCAGCTGGCTGACCTGTACAAGTCCTTCATCAAGGACTACCCAGTGGTGTCTATCGAAGATCCCTTT  609

Query  889  GACCAGGATGACTGGGGAGCTTGGCAGAAGTTCACGGCCAGTGCAGGAATCCAGGTAGTGGAGGATGATCTCAG  962
            |||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||.|||||||||||.
Sbjct  610  GACCAGGATGACTGGGGAGCTTGGCAGAAGTTCACAGCCAGTGCAGGAATCCAGGTAGTGGGGGATGATCTCAC  683

Query  963  AGTGACCAACCCAAAGAGGACAGCCTCGGCCGTGAATGAGAAGAAGTGCAACTGCCTCCTGCTCAAAGTGAACC  1036
            ||||||||||||||||||||..|||..|||||||||.||||||...|||||||||||||||||||||||.||||
Sbjct  684  AGTGACCAACCCAAAGAGGATCGCCAAGGCCGTGAACGAGAAGTCCTGCAACTGCCTCCTGCTCAAAGTCAACC  757

Query 1037  AGATTCGCTCCGTGACTGAGTCCCTTCAGGCGTGCAAGCTGGCCCAGGCGAATGGTTGGTGTGTCATGGTGCCT  1110
            |||||.||||||||||.|||||.||||||||||||||||||||||||||.|||||||||.|.|||||||||.||
Sbjct  758  AGATTGGCTCCGTGACCGAGTCTCTTCAGGCGTGCAAGCTGGCCCAGGCCAATGGTTGGGGCGTCATGGTGTCT  831

Query 1111  CATCATTCTGGGGAGACTGAAAATACCTTCATCACTGACCTGGTGGTGGGGCTG--------------------  1164
            ||||.|||.||||||||||||.|||||||||||.||||||||||.|||||||||                    
Sbjct  832  CATCGTTCGGGGGAGACTGAAGATACCTTCATCGCTGACCTGGTTGTGGGGCTGTGCACTGGGCAGATCAAGAC  905

Query 1165  --------------------------------------------------------------------------  1164
                                                                                      
Sbjct  906  TGGTGCCCCTTGCCGATCTGAGCGCTTGGCCAAGTACAACCAGCTCCTCAGAATTGAAGAGGAGCTGGGCAGCA  979

Query 1165  --------------------------------------------  1164
                                                        
Sbjct  980  AGGCTAAGTTTGCCGGCAGGAACTTCAGAAACCCCTTGGCCAAG  1023