Nucleotide Global Alignment

Description

• Query: ccsbBroad304_13227
• Subject: NM_001286536.2
• Aligned Length: 1081
• Identities: 687
• Gaps: 362

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCAGCCATGCTGAAGTGCGTGATGAGCGGCAGTCAGGTGAAAGTATTTGGGAAAGCAGTTCAAGCTCTATC  74

Query    1  -----------ATGA-TTC---------------AACCAAGATTGCTTGCT----GATG---------------  28
                       |.|| |||               ||..|||.|  ||||||    ||||               
Sbjct   75  ACGAATTAGTGACGAGTTCTGGCTAGACCCATCTAAAAAAGGT--CTTGCTCTAAGATGTGTGAATTCTTCTCG  146

Query   29  ----CCAT------------TGTTC---------TTTTTAC------ATCAA--GTCA-----AGAGGAAGTTA  64
                .|||            |||||         |||||.|      |||||  ||||     ||.|.||.|.|
Sbjct  147  GTCAGCATATGGATGTGTCCTGTTCTCTCCTGTGTTTTTTCAGCATTATCAATGGTCAGCTTTAGTGAAAATGA  220

Query   65  CT---------CTTGCTGTTACTC--CACTGAAT----------------------------TTTTGCCTCA--  97
            .|         ||||     ||.|  |||||.||                            ||||||| ||  
Sbjct  221  GTGAAAATGAACTTG-----ACACAACACTGCATTTAAAATGCAAATTGGGAATGAAGTCAATTTTGCC-CATC  288

Query   98  ---AGAGTTCT-AAT------------------GAGGA-----------------------ATCAATG------  120
               |||..||| |||                  |||.|                       ||.||||      
Sbjct  289  TTTAGATGTCTGAATTCCCTTGAAAGAAATATAGAGAAGTGCAGAATATTCACCAGATCTGATAAATGCAAAGT  362

Query  121  -------------------------GATTTGAGCAATGCTGTACACAGTGAGATGTTTGTTGGCTCAGATGAGT  169
                                     |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  363  AGTTATTCAATTCTTCTACAGACATGATTTGAGCAATGCTGTACACAGTGAGATGTTTGTTGGCTCAGATGAGT  436

Query  170  TTGACTTCTTTCAAATTGGAATGGACACTGAGATAACATTTTGTTTCAAAGAATTGAAGGGAATACTGACATTT  243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  437  TTGACTTCTTTCAAATTGGAATGGACACTGAGATAACATTTTGTTTCAAAGAATTGAAGGGAATACTGACATTT  510

Query  244  TCAGAAGCTACACATGCTCCTATATCCATTTATTTTGATTTCCCTGGGAAACCTCTGGCTTTGAGTATTGATGA  317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  511  TCAGAAGCTACACATGCTCCTATATCCATTTATTTTGATTTCCCTGGGAAACCTCTGGCTTTGAGTATTGATGA  584

Query  318  TATGTTAGTGGAAGCTAACTTTATTTTGGCCACATTAGCTGATGAACAAAGTAGAGCATCTTCACCACAGTCAC  391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  585  TATGTTAGTGGAAGCTAACTTTATTTTGGCCACATTAGCTGATGAACAAAGTAGAGCATCTTCACCACAGTCAC  658

Query  392  TGTGTCTTTCACAGAAACGAAAAAGGTCAGATCTGATTGAAAAAAAGGCTGGCAAAAATGTAACTGGCCAGGCC  465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  659  TGTGTCTTTCACAGAAACGAAAAAGGTCAGATCTGATTGAAAAAAAGGCTGGCAAAAATGTAACTGGCCAGGCC  732

Query  466  CTGGAATGTATTTCAAAAAAAGCAGCACCAAGAAGGCTTTATCCTAAGGAGACTCTCACAAACATATCTGCATT  539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  733  CTGGAATGTATTTCAAAAAAAGCAGCACCAAGAAGGCTTTATCCTAAGGAGACTCTCACAAACATATCTGCATT  806

Query  540  GGAAAACTGTGGCAGCCCTGCAATGAAAAGAGTGGATGGAGATGTCAGTGAAGTATCAGAAAGCAGTGTCAGCA  613
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  807  GGAAAACTGTGGCAGCCCTGCAATGAAAAGAGTGGATGGAGATGTCAGTGAAGTATCAGAAAGCAGTGTCAGCA  880

Query  614  ACACAGAGGAAGTGCCAGGGTCTCTGTGTCTCAGAAAGTTTTCTTGCATG------TTCTTTGGAGCAG-----  676
            |||||||||||||||||||||||||||||||||||||||.|.| ||||.|      ||...||||  ||     
Sbjct  881  ACACAGAGGAAGTGCCAGGGTCTCTGTGTCTCAGAAAGTGTGC-TGCAGGAAAGAATTTAATGGA--AGTGATG  951

Query  677  -------TTTCT------TCTGACCAGCA-AGAACACT-TCAACCACCCTTTC---GACAGTCTGGCAAGAGCA  732
                   |||||      |||||    || ||||||.| ||..||||   |.|   |||||.|||         
Sbjct  952  CCAAATATTTCTGTATTATCTGA----CATAGAACAGTATCCTCCAC---TGCCAAGACAGCCTG---------  1009

Query  733  AGTGACAGTGAAGAGGACATGAATAATGGCAGTTTCTCTATATTC  777
            |||    .||.||.|||.                           
Sbjct 1010  AGT----TTGGAGTGGAA---------------------------  1023