Construct: ORF ccsbBroad304_13227

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004410.1_s304c1, BRDN0000405454
Derived from:
ccsbBroadEn_13227
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RAD9B (144715)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13227
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001286533.2 100% 100%
2 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001286534.2 100% 100%
3 human 144715 RAD9B RAD9 checkpoint clamp compo... XM_017018882.2 100% 100%
4 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001368054.1 84.9% 84.9% 0_1ins117
5 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001368055.1 84.9% 84.9% 0_1ins117
6 human 144715 RAD9B RAD9 checkpoint clamp compo... XM_017018879.2 84.9% 84.9% 0_1ins117
7 human 144715 RAD9B RAD9 checkpoint clamp compo... XM_017018880.2 84.9% 84.9% 0_1ins117
8 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001286531.2 75% 75% 1_258del
9 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001286532.2 75% 75% 1_258del
10 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001368051.1 75% 75% 1_258del
11 human 144715 RAD9B RAD9 checkpoint clamp compo... XM_024448860.1 75% 75% 1_258del
12 human 144715 RAD9B RAD9 checkpoint clamp compo... XM_024448861.1 75% 75% 1_258del
13 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001368056.1 73.8% 69.1% (many diffs)
14 human 144715 RAD9B RAD9 checkpoint clamp compo... XM_017018881.2 73.8% 69.1% (many diffs)
15 human 144715 RAD9B RAD9 checkpoint clamp compo... XM_005253849.5 71.4% 66% (many diffs)
16 human 144715 RAD9B RAD9 checkpoint clamp compo... XM_017018877.2 70.9% 70.9% 1_318del
17 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001368053.1 66.9% 63.3% (many diffs)
18 human 144715 RAD9B RAD9 checkpoint clamp compo... XM_011537972.3 65.9% 65.9% 1_402del
19 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001286536.2 63.5% 54.6% (many diffs)
20 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001286535.2 62.1% 62.1% 1_474del
21 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_152442.4 60.1% 59.4% (many diffs)
22 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001368052.1 55.6% 52.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
846
ORF length:
777
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gattcaacca agattgcttg ctgatgccat tgttcttttt acatcaagtc
121aagaggaagt tactcttgct gttactccac tgaatttttg cctcaagagt tctaatgagg
181aatcaatgga tttgagcaat gctgtacaca gtgagatgtt tgttggctca gatgagtttg
241acttctttca aattggaatg gacactgaga taacattttg tttcaaagaa ttgaagggaa
301tactgacatt ttcagaagct acacatgctc ctatatccat ttattttgat ttccctggga
361aacctctggc tttgagtatt gatgatatgt tagtggaagc taactttatt ttggccacat
421tagctgatga acaaagtaga gcatcttcac cacagtcact gtgtctttca cagaaacgaa
481aaaggtcaga tctgattgaa aaaaaggctg gcaaaaatgt aactggccag gccctggaat
541gtatttcaaa aaaagcagca ccaagaaggc tttatcctaa ggagactctc acaaacatat
601ctgcattgga aaactgtggc agccctgcaa tgaaaagagt ggatggagat gtcagtgaag
661tatcagaaag cagtgtcagc aacacagagg aagtgccagg gtctctgtgt ctcagaaagt
721tttcttgcat gttctttgga gcagtttctt ctgaccagca agaacacttc aaccaccctt
781tcgacagtct ggcaagagca agtgacagtg aagaggacat gaataatggc agtttctcta
841tattcttgcc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
901gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
961acctctggat ta

Download FASTA (ORF) (Full)