Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13271
- Subject:
- XR_001738646.2
- Aligned Length:
- 5466
- Identities:
- 1224
- Gaps:
- 4241
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GATGTTGACAGCTCAGCCCCAACAAGCTGATGACACCATGCCATGCCATCCCATGCCACGCCACCTCAATCCCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGTTACACAGCCAAAGGCTCAGAGGCCCATTCCAGAGTGACTGCAGTGAGGATAAAGAGATTTCCCCAGCTGCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGCCACTACCCCCTTTCAAAGGTGAACACAGTAAAATTTATGACAGGTGCTCTATCAGAACACAGAGGAACATA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAAGCAGGAGGAGGTGTGATAGCCCATCCATCTGCTGGAGCAGCTCTTCCAGAGGCCCGAGTCACCTGGAGCAT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TCTGGCATGGGGCTGCGGCCAGGCATTTTCCTCCTGGAGCTGCTGCTGCTTCTGGGGCAAGGGACCCCTCAGAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCATACCTCTCCTAGAAAGAGTACATTGGAAGGGCAGCTATGGCCAGAGACCCTGAAGAATTCTCCATTCCCAT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCAACCCAAATAAATTAGGAGTGAATATGCCTTCTAAATCAGTTCACTCTCTGAAGCCTTCTGATATTAAATTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GTGGCAGCCATTGGCAATCTGGAAATTCCTCCAGACCCAGGGACGGGCGATCTGGAGAAGCAAGACTGGACTGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AAGGCCACAGCAGGTGTGCATGGGAGTGATGACAGTCCTTTCAGACATCATCAGATATTTCAGTCCTTCTGTTC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CAATGCCTGTGTGCCACACTGGAAAGAGAGTCATACCCCACGATGGTGCTGAAGACTTGTGGATTCAGGCTCAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAACTGGTGAGAAACATGAAAGAGAACCTGGGAGGTGGTGGAGAGCTTCAGTTCCAGCAACTTGACTTTCAATT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGACTGGAAGCTCATCAATGTGTTCTTCAGTAATGCAAGCCAGTGTTACCTGTGCCCCTCTGCTCAACAGGCAC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCTCACTTAGCACGGTTCTCCTCTCACAGAATGGGCTTGCGGCGGGCGGCGTGGATGAGCTGATGGGGGTGCTG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GACTACCTGCAGCAGGAGGTCCCCAGAGCATTTGTAAACCTGGTGGACCTCTCTGAGGTTGCAGAGGTCTCTCG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TCAGTATCACGGCACTTGGCTCAGCCCTGCACCAGAGCCCTGTAATTGCTCAGAGGAGACCACCCGGCTGGCCA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGGTGGTGATGCAGTGGTCTTATCAGGAAGCCTGGAACAGCCTCCTGGCCTCCAGCAGGTACAGTGAGCAGGAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCCTTCACCGTGGTTTTCCAGCCTTTCTTCTATGAGACCACCCCATCTCTACACTCGGAGGACCCCCGACTCCA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GGATTCTACCACGCTGGCCTGGCATCTCTGGAATAGGATGATGGAGCCAGCAGGAGAGAAAGATGAGCCATTGA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GTGTAAAACACGGGAGGCCAATGAAGTGTCCCTCTCAGGAGAGCCCCTATCTGTTCAGCTACAGAAACAGCAAC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TACCTGACCAGACTGCAGAAACCCCAAGACAAGCTTGAGGTAAGAGAAGGAGCGGAAATCAGATGTCCTGACAA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AGACCCCTCCGATACGGTTCCCACCTCAGTTCATAGGCTGAAGCCGGCTGACATCAACGTAATTGGAGCCCTGG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GTGACTCTCTCACGGCAGGCAATGGGGCCGGGTCCACACCTGGGAACGTCTTGGACGTCTTGACTCAGTACCGA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GGCCTGTCCTGGAGCGTCGGCGGAGATGAGAACATCGGCACCGTTACCACCCTGGCGAACATCCTCCGGGAATT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CAACCCTTCCCTGAAGGGCTTCTCTGTTGGCACTGGGAAAGAAACCAGTCCTAATGCCTTCTTAAACCAGGCTG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGGCAGGAGGCCGAGCTGAGGATCTACCTGTCCAGGCCAGGAGGCTGGTGGACCTGATGAAGAATGACACGAGG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ATACACTTTCAGGAAGACTGGAAGATAATAACCCTGTTTATAGGCGGCAATGACCTCTGTGATTTCTGCAATGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TCTGGTCCACTATTCTCCCCAGAACTTCACAGACAACATTGGAAAGGCCCTGGACATCCTCCATGCTGAGGTTC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CTCGGGCATTTGTGAACCTGGTGACGGTGCTTGAGATCGTCAACCTGAGGGAGCTGTACCAGGAGAAAAAAGTC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TACTGCCCAAGGATGATCCTCAGGTCTCTGTGTCCCTGTGTCCTGAAGTTTGATGATAACTCAACAGAACTTGC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TACCCTCATCGAATTCAACAAGAAGTTTCAGGAGAAGACCCACCAACTGATTGAGAGTGGGCGATATGACACAA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GGGAAGATTTTACTGTGGTTGTGCAGCCGTTCTTTGAAAACGTGGACATGCCAAAGACCTCGGAAGGATTGCCT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GACAACTCTTTCTTCGCTCCTGACTGTTTCCACTTCAGCAGCAAGTCTCACTCCCGAGCAGCCAGTGCTCTCTG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GAACAATATGCTGGAGCCTGTTGGCCAGAAGACGACTCGTCATAAGTTTGAAAACAAGATCAATATCACATGTC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CGAACCAGGTCCAGCCGTTTCTGAGGACCTACAAGAACAGCATGCAGGGTCATGGGACCTGGCTGCCATGCAGG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GACAGAGCCCCTTCTGCCTTGCACCCTACCTCAGTGCATGCCCTGAGACCTGCAGACATCCAAGTTGTGGCTGC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TCTGGGGGATTCTCTGACCGCTGGCAATGGAATTGGCTCCAAACCAGACGACCTCCCCGATGTCACCACACAGT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 ATCGGGGACTGTCATACAGTGCAGGAGGGGACGGCTCCCTGGAGAATGTGACCACCTTACCTAATATCCTTCGG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GAGTTTAACAGAAACCTCACAGGCTACGCCGTGGGCACGGGTGATGCCAATGACACGAATGCATTCCTCAATCA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AGCTGTTCCCGGAGCAAAGGCTGAGGATCTTATGAGCCAAGTCCAAACTCTGATGCAGAAGATGAAAGATGATC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ATAGAGTAAATTTCCATGAAGACTGGAAGGTCATCACAGTGCTGATCGGAGGCAGCGATTTATGTGACTACTGC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 ACAGATTCGAATCTGTATTCTGCAGCCAACTTTGTTCACCATCTCCGCAATGCCTTGGACGTCCTGCATAGAGA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GGTGCCCAGAGTCCTGGTCAACCTCGTGGACTTCCTGAACCCCACTATCATGCGGCAGGTGTTCCTGGGAAACC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CAGACAAGTGCCCAGTGCAGCAGGCCAGCGTTTTGTGTAACTGCGTTCTGACCCTGCGGGAGAACTCCCAAGAG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CTAGCCAGGCTGGAGGCCTTCAGCCGAGCCTACCGGAGCAGCATGCGCGAGCTGGTGGGGTCAGGCCGCTATGA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CACGCAGGAGGACTTCTCTGTGGTGCTGCAGCCCTTCTTCCAGAACATCCAGCTCCCTGTCCTGGCGGATGGGC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TCCCAGATACGTCCTTCTTTGCCCCAGACTGCATCCACCCAAATCAGAAATTCCACTCCCAGCTGGCCAGAGCC 3404
Query 1 ---------------------------------------------------------------ATGCCCATCAC 11
|||||||||||
Sbjct 3405 CTTTGGACCAATATGCTTGAACCACTTGGAAGCAAAACAGAGACCCTGGACCTGAGAGCAGAGATGCCCATCAC 3478
Query 12 CTGTCCCACTCAGAATGAGCCCTTCCTGAGAACCCCTCGGAATAGTAACTACACGTACCCCATCAAGCCAGCCA 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479 CTGTCCCACTCAGAATGAGCCCTTCCTGAGAACCCCTCGGAATAGTAACTACACGTACCCCATCAAGCCAGCCA 3552
Query 86 TTGAGAACTGGGGCAGTGACTTCCTGTGTACAGAGTGGAAGGCTTCCAATAGTGTTCCAACCTCTGTCCACCAG 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553 TTGAGAACTGGGGCAGTGACTTCCTGTGTACAGAGTGGAAGGCTTCCAATAGTGTTCCAACCTCTGTCCACCAG 3626
Query 160 CTCCGACCAGCAGACATCAAAGTGGTGGCCGCCCTGGGTGACTCTCTGACTACAGCAGTGGGAGCTCGACCAAA 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3627 CTCCGACCAGCAGACATCAAAGTGGTGGCCGCCCTGGGTGACTCTCTGACTACAGCAGTGGGAGCTCGACCAAA 3700
Query 234 CAACTCCAGTGACCTACCCACATCTTGGAGGGGACTCTCTTGGAGCATTGGAGGGGATGGGAACTTGGAGACTC 307
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 CAACTCCAGTGACCTACCCACATCTTGGAGGGGACTCTCTTGGAG----------------------------- 3745
Query 308 ACACCACACTGCCCAACATTCTGAAGAAGTTCAACCCTTACCTCCTTGGCTTCTCTACCAGCACCTGGGAGGGG 381
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3746 ---------------ACATTCTGAAGAAGTTCAACCCTTACCTCCTTGGCTTCTCTACCAGCACCTGGGAGGGG 3804
Query 382 ACAGCAGGACTAAATGTGGCAGCGGAAGGGGCCAGAGCTAGGGACATGCCAGCCCAGGCCTGGGACCTGTTAGA 455
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 3805 ACAGCAGGACTAAATGTGGCAGCGGAAGGGGCCAGAGCTAGGGACATGCCAGCCCAGGCCTGGGACCTGGTAGA 3878
Query 456 GCGAATGAAAAACAGCCCCGACATCAACCTGGAGAAAGACTGGAAGCTGGTCACACTCTTCATTGGGGTCAACG 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3879 GCGAATGAAAAACAGCCCCGACATCAACCTGGAGAAAGACTGGAAGCTGGTCACACTCTTCATTGGGGTCAACG 3952
Query 530 ACTTGTGTCATTACTGTGAGAATCCGGAGGCCCACTTGGCCACGGAATATGTTCAGCACATCCAACAGGCCCTG 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3953 ACTTGTGTCATTACTGTGAGAATCCGGAGGCCCACTTGGCCACGGAATATGTTCAGCACATCCAACAGGCCCTG 4026
Query 604 GACATCCTCTCTGAGGAGCTCCCAAGGGCTTTCGTCAACGTGGTGGAGGTCATGGAGCTGGCTAGCCTGTACCA 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4027 GACATCCTCTCTGAGGAGCTCCCAAGGGCTTTCGTCAACGTGGTGGAGGTCATGGAGCTGGCTAGCCTGTACCA 4100
Query 678 GGGCCAAGGCGGGAAATGTGCCATGCTGGCAGCTCAGAACAACTGCACTTGCCTCAGACACTCGCAAAGCTCCC 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4101 GGGCCAAGGCGGGAAATGTGCCATGCTGGCAGCTCAGAACAACTGCACTTGCCTCAGACACTCGCAAAGCTCCC 4174
Query 752 TGGAGAAGCAAGAACTGAAGAAAGTGAACTGGAACCTCCAGCATGGCATCTCCAGTTTCTCCTACTGGCACCAA 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4175 TGGAGAAGCAAGAACTGAAGAAAGTGAACTGGAACCTCCAGCATGGCATCTCCAGTTTCTCCTACTGGCACCAA 4248
Query 826 TACACACAGCGTGAGGACTTTGCGGTTGTGGTGCAGCCTTTCTTCCAAAACACACTCACCCCACTGAACGAGAG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4249 TACACACAGCGTGAGGACTTTGCGGTTGTGGTGCAGCCTTTCTTCCAAAACACACTCACCCCACTGAACGAGAG 4322
Query 900 AGGGGACACTGACCTCACCTTCTTCTCCGAGGACTGTTTTCACTTCTCAGACCGCGGGCATGCCGAGATGGCCA 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4323 AGGGGACACTGACCTCACCTTCTTCTCCGAGGACTGTTTTCACTTCTCAGACCGCGGGCATGCCGAGATGGCCA 4396
Query 974 TCGCACTCTGGAACAACATGCTGGAACCAGTGGGCCGCAAGACTACCTCCAACAACTTCACCCACAGCCGAGCC 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4397 TCGCACTCTGGAACAACATGCTGGAACCAGTGGGCCGCAAGACTACCTCCAACAACTTCACCCACAGCCGAGCC 4470
Query 1048 AAACTCAAGTGCCCCTCTCCTGAGAGCCCTTACCTCTACACCCTGCGGAACAGCCGATTGCTCCCAGACCAGGC 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4471 AAACTCAAGTGCCCCTCTCCTGAGAGCCCTTACCTCTACACCCTGCGGAACAGCCGATTGCTCCCAGACCAGGC 4544
Query 1122 TGAAGAAGCCCCCGAGGTGCTCTACTGGGCTGTCCCAGTGGCAGCGGGAGTCGGCCTTGTGGTGGGCATCATCG 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4545 TGAAGAAGCCCCCGAGGTGCTCTACTGGGCTGTCCCAGTGGCAGCGGGAGTCGGCCTTGTGGTGGGCATCATCG 4618
Query 1196 GGACAGTGGTCTGGAGGTGCAGGAGAGGTGGCCGGAGGGAAGATCCTCCAATGAGCCTGCGCACTGTGGCCCTC 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4619 GGACAGTGGTCTGGAGGTGCAGGAGAGGTGGCCGGAGGGAAGATCCTCCAATGAGCCTGCGCACTGTGGCCCTC 4692
Query 1270 -------------------------------------------------------------------------- 1269
Sbjct 4693 TAGGCCCGGGGGTGGGTCCTCACCCTAAACTCCCTATAGCCACTCTCTTCACCGCCCTCTGCCCCAGCCACTCC 4766
Query 1270 -------------------------------------------------------------------------- 1269
Sbjct 4767 CGGCCACCAGGACATGCTTCAATGCCTGGTGCCATAGGAAGCCCAGGGGACAGTCACAACTTCTTGGGGCCTGG 4840
Query 1270 -------------------------------------------------------------------------- 1269
Sbjct 4841 GCTTCTTCCAGGCCTATGCTCCTGGAATGGATACATTTAAATAAAGTCCAAAGCTATTTTATTCCTGGGTTTGC 4914
Query 1270 -------------------------------------------------------------------------- 1269
Sbjct 4915 CTGCGTGAAGCACTCACCTTCCATCTCTTGTGCAGCCCAGGTGTGGGAGCTGCCACTTTTTGTGGCCTGCCTCC 4988
Query 1270 -------------------------------------------------------------------------- 1269
Sbjct 4989 AGCAGGGCTGCCCAAGCCACGACCAACCAGAGCCCAAACTGCCTGCCACCACGAGCATATCCTCAAGTCACCAA 5062
Query 1270 -------------------------------------------------------------------------- 1269
Sbjct 5063 ACCCACTATTTCAAAGGCAGAAAAAATGCTGGTCACCAGGTGGTGGCTGGAATTTTGGAGCTGGCTGGTTGCCA 5136
Query 1270 -------------------------------------------------------------------------- 1269
Sbjct 5137 TTCAGTCCAATCCAACACATACCTATTAAGCAACTGTTTTGTATCCAGGACAATGCGAAGCACTGAGGTGCCTC 5210
Query 1270 -------------------------------------------------------------------------- 1269
Sbjct 5211 CTAGGCTGTGCATGTCGCAGCCTGGCAGAGAGGTCAAACTCCTTCAATAACCAAGAAGCCACGTGATGATGTGT 5284
Query 1270 -------------------------------------------------------------------------- 1269
Sbjct 5285 AACTACTAGGGCATCAGTAGGTAAATGTGTCTGATTGTTTTAAAGAATAGAAAGGGTTCTTCGGGGAAAGTTTC 5358
Query 1270 ---------------------------------------------------------------- 1269
Sbjct 5359 TTGGGGGAGAGCAACCTTCACATGTCATTTTGGGAAAAGGAATAAAAAATGATTGGGACACAAA 5422
