Nucleotide Global Alignment

Description

• Query: ccsbBroad304_13293
• Subject: XR_002959845.1
• Aligned Length: 1538
• Identities: 1154
• Gaps: 383

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CCTTGGGAAGAGGCCCCAGAAACAGGAAGACCTTAGTTAGGATGCAATTACAATTCCTTGGTACATTGGCTTCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCAGAAAAAAGAAAAAAATCACAGAGATTGTTTTTCAAAAATATCAAATCTACAAAAAATAAAGCTGGAAAAGC  148

Query    1  -------ATGAGTTCAGATACAAATGTAAACAAAAGTGCCTCTCCAACTGCGACTGCAGAGGAACAGCCAGTTG  67
                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  AAGCATCATGAGTTCAGATACAAATGTAAACAAAAGTGCCTCTCCAACTGCGACTGCAGAGGAACAGCCAGTTG  222

Query   68  AACCTGATGGCCCCCTTCCTGGCTCAGACAATAACCAAGAAAAGAAAGTAAGATTATCTCCAGCCAAAATGTCA  141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  AACCTGATGGCCCCCTTCCTGGCTCAGACAATAACCAAGAAAAGAAAGTAAGATTATCTCCAGCCAAAATGTCA  296

Query  142  ACCAAGAATTCTACAGATCTAGTTGAATATGTTGACAAGAGTCATGCTTTTCTCCCCATCATTCCAAACACCCA  215
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ACCAAGAATTCTACAGATCTAGTTGAATATGTTGACAAGAGTCATGCTTTTCTCCCCATCATTCCAAACACCCA  370

Query  216  GAGAGGTCAGCTAGAAGACAGACTGAACAACCAGGCGCGTACCATAGCTTTCCTTCTTGAACAAGCCTTCCGCA  289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GAGAGGTCAGCTAGAAGACAGACTGAACAACCAGGCGCGTACCATAGCTTTCCTTCTTGAACAAGCCTTCCGCA  444

Query  290  TCAAGGAGGACATCTCTGCTTGCCTGCAGGGGACCCATGGCTTTCGAAAAGAGGAATCGCTCGCCAGGAAGTTA  363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TCAAGGAGGACATCTCTGCTTGCCTGCAGGGGACCCATGGCTTTCGAAAAGAGGAATCGCTCGCCAGGAAGTTA  518

Query  364  CTGGAAAGCCACATCCAGACCATCACCAGCATCGTCAAAAAACTCAGCCAAAATATTGAGATTTTAGAAGACCA  437
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CTGGAAAGCCACATCCAGACCATCACCAGCATCGTCAAAAAACTCAGCCAAAATATTGAGATTTTAGAAGACCA  592

Query  438  AATAAGAGCTCGAGATCAGGCGGCCACAGGAACTAACTTTGCAGTACACGAGATAAACATCAAACACCTACAAG  511
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AATAAGAGCTCGAGATCAGGCGGCCACAGGAACTAACTTTGCAGTACACGAGATAAACATCAAACACCTACAAG  666

Query  512  GAGTTGGAGATCTTCGAGGAAGAGTAGCCAGATGTGATTCAAGCATTGTGAAGCTTTCTGGAGACATTCACTTA  585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GAGTTGGAGATCTTCGAGGAAGAGTAGCCAGATGTGATTCAAGCATTGTGAAGCTTTCTGGAGACATTCACTTA  740

Query  586  TTCAGGCAAGAGCACCGGCAAATTGAGAAAGCCATTCAAGAATTCGTGCCCGCCCTGGAAACTCTTTCCAAGAA  659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TTCAGGCAAGAGCACCGGCAAATTGAGAAAGCCATTCAAGAATTCGTGCCCGCCCTGGAAACTCTTTCCAAGAA  814

Query  660  CTTGGACATGAAGGTGATGCAGCTCTTAGGAAAGATTGAAACTGCCAGTTCTGAGCAAACCTCGAATTTAAAGA  733
            ||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct  815  CTTGGACATGAAGGTGATGCAGCTCTTAGGAAAGATAGAAACTGCCAGTTCTGAGCAAACCTCGAATTTAAAGA  888

Query  734  TGGTCCAGGGGGATTATCGCCACGAAATGAACCTTTTGGAATTCAA----------------------------  779
            ||||||||||||||||||||||||||||||||||||||||||||||                            
Sbjct  889  TGGTCCAGGGGGATTATCGCCACGAAATGAACCTTTTGGAATTCAAGAAAAGGAAAGAATAAGCTCTATCTCAT  962

Query  780  --------------------------------------------------------------------------  779
                                                                                      
Sbjct  963  CACCTATCTGTATACATCTAATAGAAATGCTCATACACCTATTGAAATAGAAGATTTGGGATCTAAAATGTGAA  1036

Query  780  ---------------------------------------ATTTCATTCACTTTCAAGTAATCTGTACGAAGAAG  814
                                                   |||||||||||||||||||||||||||||||||||
Sbjct 1037  TGTCATCTAAGATAGATTCATACTGCTGAGATTTTAACTATTTCATTCACTTTCAAGTAATCTGTACGAAGAAG  1110

Query  815  TTGAGAATAATAAAAAATGGACAGAAAACCAATTTCTCAAATATAGAAAAGACCACCTGGGCCATATAAATGAA  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TTGAGAATAATAAAAAATGGACAGAAAACCAATTTCTCAAATATAGAAAAGACCACCTGGGCCATATAAATGAA  1184

Query  889  TGTCTGAAGGTCCTACAGGAGAAACTGGAAAAGTCTGAAAATAAAATGGAAGAAAAACTGCTGCAGCTTTCAAG  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TGTCTGAAGGTCCTACAGGAGAAACTGGAAAAGTCTGAAAATAAAATGGAAGAAAAACTGCTGCAGCTTTCAAG  1258

Query  963  CAAAGTAGAGAATTTCATTAACACACAGAAACAGGAAACACAACTAAGTAAAGTAAAGCATATGGAAAATAAAT  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CAAAGTAGAGAATTTCATTAACACACAGAAACAGGAAACACAACTAAGTAAAGTAAAGCATATGGAAAATAAAT  1332

Query 1037  TGTCCAAAAAGATGGAACAAATGGAAAAGCAGATCTGGGGTGAATTAGAGACAATGCAGAATGAATATCAATCA  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  TGTCCAAAAAGATGGAACAAATGGAAAAGCAGATCTGGGGTGAATTAGAGACAATGCAGAATGAATATCAATCA  1406

Query 1111  GGATTTAAATCAATTCATGACTCTCTCAGCTCCCTCCAACAAATACAGAAAACAAAGATGGATTTAGAGAAATA  1184
            |||||||||||||||||||||||||||||||||||||||||||||                             
Sbjct 1407  GGATTTAAATCAATTCATGACTCTCTCAGCTCCCTCCAACAAATA-----------------------------  1451

Query 1185  TAAAGTACAGAAAGACCTAAAGAAATTACAGCGCAAGATAGTGGAACTCCAGGAAGTA  1242
                                                                      
Sbjct 1452  ----------------------------------------------------------  1451