Nucleotide Global Alignment

Description

• Query: ccsbBroad304_13293
• Subject: XR_246533.3
• Aligned Length: 1559
• Identities: 1105
• Gaps: 453

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CCTTGGGAAGAGGCCCCAGAAACAGGAAGACCTTAGTTAGGATGCAATTACAATTCCTTGGTACATTGGCTTCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCAGAAAAAAGAAAAAAATCACAGAGATTGTTTTTCAAAAATATCAAATCTACAAAAAATAAAGCTGGAAAAGC  148

Query    1  -------ATGAGTTCAGATACAAATGTAAACAAAAGTGCCTCTCCAACTGCGACTGCAGAGGAACAGCCAGTTG  67
                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  AAGCATCATGAGTTCAGATACAAATGTAAACAAAAGTGCCTCTCCAACTGCGACTGCAGAGGAACAGCCAGTTG  222

Query   68  AACCTGATGGCCCCCTTCCTGGCTCAGACAATAACCAAGAAAAGAAAGTAAGATTATCTCCAGCCAAAATGTCA  141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  AACCTGATGGCCCCCTTCCTGGCTCAGACAATAACCAAGAAAAGAAAGTAAGATTATCTCCAGCCAAAATGTCA  296

Query  142  ACCAAGAATTCTACAGATCTAGTTGAATATGTTGACAAGAGTCATGCTTTTCTCCCCATCATTCCAAACACCCA  215
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ACCAAGAATTCTACAGATCTAGTTGAATATGTTGACAAGAGTCATGCTTTTCTCCCCATCATTCCAAACACCCA  370

Query  216  GAGAGGTCAGCTAGAAGACAGACTGAACAACCAGGCGCGTACCATAGCTTTCCTTCTTGAACAAGCCTTCCGCA  289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GAGAGGTCAGCTAGAAGACAGACTGAACAACCAGGCGCGTACCATAGCTTTCCTTCTTGAACAAGCCTTCCGCA  444

Query  290  TCAAGGAGGACATCTCTGCTTGCCTGCAGGGGACCCATGGCTTTCGAAAAGAGGAATCGCTCGCCAGGAAGTTA  363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TCAAGGAGGACATCTCTGCTTGCCTGCAGGGGACCCATGGCTTTCGAAAAGAGGAATCGCTCGCCAGGAAGTTA  518

Query  364  CTGGAAAGCCACATCCAGACCATCACCAGCATCGTCAAAAAACTCAGCCAAAATATTGAGATTTTAGAAGACCA  437
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CTGGAAAGCCACATCCAGACCATCACCAGCATCGTCAAAAAACTCAGCCAAAATATTGAGATTTTAGAAGACCA  592

Query  438  AATAAGAGCTCGAGATCAGGCGGCCACAGGAACTAACTTTGCAGTACACGAGATAAACATCAAACACCTACAAG  511
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AATAAGAGCTCGAGATCAGGCGGCCACAGGAACTAACTTTGCAGTACACGAGATAAACATCAAACACCTACAAG  666

Query  512  GAGTTGGAGATCTTCGAGGAAGAGTAGCCAGATGTGATTCAAGCATTGTGAAGCTTTCTGGAGACATTCACTTA  585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GAGTTGGAGATCTTCGAGGAAGAGTAGCCAGATGTGATTCAAGCATTGTGAAGCTTTCTGGAGACATTCACTTA  740

Query  586  TTCAGGCAAGAGCACCGGCAAATTGAGAAAGCCATTCAAGAATTCGTGCCCGCCCTGGAAACTCTTTCCAAGAA  659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TTCAGGCAAGAGCACCGGCAAATTGAGAAAGCCATTCAAGAATTCGTGCCCGCCCTGGAAACTCTTTCCAAGAA  814

Query  660  CTTGGACATGAAGGTGATGCAGCTCTTAGGAAAGATTGAAACTGCCAGTTCTGAGCAAACCTCGAATTTAAAGA  733
            ||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct  815  CTTGGACATGAAGGTGATGCAGCTCTTAGGAAAGATAGAAACTGCCAGTTCTGAGCAAACCTCGAATTTAAAGA  888

Query  734  TGGTCCAGGGGGATTATCGCCACGAAATGAACCTTTTGGAATTCAAATTTCATTCACTTTCAAGTAATCTGTAC  807
            ||||||||||||||||||||||||||||||||||||||||||||||                            
Sbjct  889  TGGTCCAGGGGGATTATCGCCACGAAATGAACCTTTTGGAATTCAA----------------------------  934

Query  808  GAAGAAGTTGAGAATAATAAAAAATGGACAGAAAACCAATTTCTCAAATATAGAAAAGACCACCTGGGCCATAT  881
                                                                                      
Sbjct  935  --------------------------------------------------------------------------  934

Query  882  AAATGAATGTCTGAAGGTCCTACAGGAGAAACTGGAAAAGTCTGAAAATAAAATGGAAGAAAAACTGCTGCAGC  955
                                              ||||||||||||||||||||||||||||||||||||||||
Sbjct  935  ----------------------------------GAAAAGTCTGAAAATAAAATGGAAGAAAAACTGCTGCAGC  974

Query  956  TTTCAAGCAAAGTAGAGAATTTCATTAACACACAGAAACAGGAAACACAACTAAGTAAAGTAAAGCATATGGAA  1029
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  975  TTTCAAGCAAAGTAGAGAATTTCATTAACACACAGAAACAGGAAACACAACTAAGTAAAGTAAAGCATATGGAA  1048

Query 1030  AATAAATTGTCCAAAAAGATGGAACAAATGGAAAAGCAGATCTGGGGTGAATTAGAGACAATGCAGAATGAATA  1103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049  AATAAATTGTCCAAAAAGATGGAACAAATGGAAAAGCAGATCTGGGGTGAATTAGAGACAATGCAGAATGAATA  1122

Query 1104  TCAATCAGGATTTAAATCAATTCATGACTCTCTCAGCTCCCTCCAACAAATACAGAAAACAAAGATGGATTTAG  1177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123  TCAATCAGGATTTAAATCAATTCATGACTCTCTCAGCTCCCTCCAACAAATACAGAAAACAAAGATGGATTTAG  1196

Query 1178  AGAAATATAAAGTACAGAAAGACCTAAAGAAATTACAGCGCAAGATAGTGGAACTCCAGGAAGTA---------  1242
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct 1197  AGAAATATAAAGTACAGAAAGACCTAAAGAAATTACAGCGCAAGATAGTGGAACTCCAGGAAGTATAAACCTTT  1270

Query 1243  --------------------------------------------------------------------------  1242
                                                                                      
Sbjct 1271  TCAGTCATCTTCTTTTTCATCAGCCAATGGAGTGATTTGTTGGAAAAAGTTCTGAAGAAGAAAGTTACTATCTC  1344

Query 1243  --------------------------------------------------------------------------  1242
                                                                                      
Sbjct 1345  TGGGATGTTTACTGCTTCTAATGTCTCCTTTTAAGGAGACGAATGTACCAGAAAAATAATAAAGCAAAGAAGCT  1418

Query 1243  -----  1242
                 
Sbjct 1419  TCGGA  1423