Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13302
- Subject:
- XM_017320486.1
- Aligned Length:
- 1781
- Identities:
- 935
- Gaps:
- 724
Alignment
Query 1 ---------------ATGAAAGAGGCGGCCCTCATCTATCTTGACAGAAGTGGAGGCCTCCAAAAGTTTATAGA 59
|||||||||||.|||||..||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGACTCTTCAGATGAAAGAGGCAGCCCTTGTCTATCTTGACAGAAGTGGAGGCCTCCAAAAGTTTATAGA 74
Query 60 TGATTGCAAGTACTACAATGATTCAAAACAAAGCTATGCTGTCTATCGATTCAAAATTTTAATAAATCCCTCTG 133
.||.|||||||.|||||||||||||||.||.||.||||||||||||||.||||..|||.|||||.|.||||.||
Sbjct 75 CGACTGCAAGTCCTACAATGATTCAAAGCAGAGTTATGCTGTCTATCGGTTCAGTATTCTAATAGACCCCTGTG 148
Query 134 ATGTTGTTGAATTAGATGCTGAGCTTGGAAATCACATTTTACACCAACCTTTAAAAGCTGCTGAAGTCTTTCAA 207
|.||||||||||||||||||||.|||||||||||||||||||||||.||.||||||||||||..|||.||||||
Sbjct 149 ACGTTGTTGAATTAGATGCTGACCTTGGAAATCACATTTTACACCATCCCTTAAAAGCTGCTCGAGTTTTTCAA 222
Query 208 TCAGTCTGTTTTATTGCTGTTAAGACTCTCTCATTAATTGGACAATTGCAGACTGAAACGCAAATTAATATAGT 281
||||||||.|||.|||||||||||||||||||||||||||||||.||.|||||||||||.|||||.|||||.||
Sbjct 223 TCAGTCTGCTTTGTTGCTGTTAAGACTCTCTCATTAATTGGACAGTTACAGACTGAAACTCAAATCAATATTGT 296
Query 282 GCTGAAATTAACACATTTACCTCCCCTGCCAAGTTATGGTCTTGATCTTTGTGAGTTTCCACTTGATTATACAT 355
||||||.||||||||||||||..||||||||||.|||..|||||||||||||||||||||||||.|||||.|||
Sbjct 297 GCTGAAGTTAACACATTTACCAGCCCTGCCAAGCTATACTCTTGATCTTTGTGAGTTTCCACTTAATTATGCAT 370
Query 356 CTCAGAGATTTTATATGATGCAAGGAATTGTGATTGCAATGACAACTATAACCAAGTATACACAAGGGGCAAGA 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||.|||||.|||||
Sbjct 371 CTCAGAGATTTTATATGATGCAAGGAATTGTGATTGCAATGACAACTATAACCAAGTACACTCAAGGTGCAAG- 443
Query 430 TTTCTT-TGTTCAGATGAAGCATGCCCTCTTTCAAAAGGATTTCAGTATATAAGAGTGCATGTGCCTGGTGCTA 502
.||||| ||||||||||.||..||.||||||||||||||||||||||||.|.|||||.|||||||||||.||||
Sbjct 444 GTTCTTGTGTTCAGATGGAGTGTGTCCTCTTTCAAAAGGATTTCAGTATGTGAGAGTCCATGTGCCTGGAGCTA 517
Query 503 CAGAATCTGCAACGATAAGAAATGACTTTTTGTGTAATCTATGTGCATCTTCACTTCAAGAAGACAGAAAATTT 576
|||||||||||||..||||||||||||||||.||.|.|||.|||.|||||||||||||||||||||||||||||
Sbjct 518 CAGAATCTGCAACAGTAAGAAATGACTTTTTATGCAGTCTCTGTTCATCTTCACTTCAAGAAGACAGAAAATTT 591
Query 577 AGAGTACTTGGTGATAAACAAATAGTTGAAATAATTGCCACAAAGGCACTTCGTGCTTTTCAAGGATATTCTAA 650
||||||||||||||||||||.||||||||||||||..|||||||.....|||.|||||||||||||.|.|||||
Sbjct 592 AGAGTACTTGGTGATAAACAGATAGTTGAAATAATCACCACAAAAATGTTTCATGCTTTTCAAGGAGACTCTAA 665
Query 651 CAACCAGCCATTTAGGTTTCAATCACTTACAATTTTCCTAAGAGATGAATCAGTGAATAAAATGAATATAGGAA 724
.|||||||||||||||||||||||||||...||||||||||||||||||..|||||||||.|||||.|||||||
Sbjct 666 AAACCAGCCATTTAGGTTTCAATCACTTGGTATTTTCCTAAGAGATGAACTAGTGAATAAGATGAAAATAGGAA 739
Query 725 ATGAATATAAAATTATTGGAATTCCAACCTGTGTAAAAACCTCACAAACTGCTGTCTGTATAGAAGCAAATAGC 798
||||||||||||||||||||||||||..||||||.|||||.||||||||||||.|||||.||||||||||||..
Sbjct 740 ATGAATATAAAATTATTGGAATTCCAGTCTGTGTCAAAACTTCACAAACTGCTCTCTGTGTAGAAGCAAATAAT 813
Query 799 ATAACTTTTTGTAATT----------CAAAAGTTCCTTCAGGAATTAGTGACAACTTCAGGTGTCTCCTCTCCT 862
||.|| | ||||||||||||.||||||||||||||||||.|||.||||||||||||
Sbjct 814 ATCAC----------TCCCCACACAGCAAAAGTTCCTTTAGGAATTAGTGACAACTTTAGGCGTCTCCTCTCCT 877
Query 863 TAACTTCCAGCTCATGCTGGAAGTTTACAGCAATACTTGCCAATATCTTTGCATCACAAATTACCCCTCCTGGG 936
|.|||||.|||||.||||||||.||.||||||||.||.||||||.|||||||||||||.|||....||||||||
Sbjct 878 TGACTTCGAGCTCGTGCTGGAAATTCACAGCAATGCTGGCCAATGTCTTTGCATCACAGATTGTTGCTCCTGGG 951
Query 937 ACTTACAATTTGCTCAAGCTCTGTTTGTTGATGAGTCTAGTACAGACAACTGACCGTAACAAGGAACTGGAAGA 1010
|||||||||||||||||.||.||||||||||||||||||||||||||||..|||.|.||||.|||||..|||||
Sbjct 952 ACTTACAATTTGCTCAAACTTTGTTTGTTGATGAGTCTAGTACAGACAAGAGACTGCAACAGGGAACGAGAAGA 1025
Query 1011 TTGCCTGGATATTTTAATTATAACAAGTGATACTCTACTCATAGACAGGCTTCTGAATTTTAGCATAAACCTTG 1084
.|||.|||||||||||.|||||||.|||||.|||||.||..|||||||| .|||.|.|.
Sbjct 1026 CTGCTTGGATATTTTAGTTATAACCAGTGACACTCTGCTTGTAGACAGG-GTCTCACTA--------------- 1083
Query 1085 TCCCCCGTGGTATACGTCATCTAGTCTCTACTGAAATTTTTCCCACTCTATCCAGGAATAAGTATGGAACTGGA 1158
Sbjct 1084 -------------------------------------------------------------------------- 1083
Query 1159 GCAGTTAGCATTCAGGCTGGCAGTGCTTTGCTAGCTAAAGGTGGTATCTGCTTTATAGGAGACTTGGCTTCACA 1232
Sbjct 1084 -------------------------------------------------------------------------- 1083
Query 1233 CAAAAAAGATAAACTTGAACAGCTTCAAACAGTTCTGGAGAGCAGAAGCATCACAGTGTACATCCCAGGAAAGA 1306
Sbjct 1084 -------------------------------------------------------------------------- 1083
Query 1307 AGTTTGGGGAGGATATTGATCAACAGATGACTTTTCCAGTTCAGTGCAGTTTTTGGTCTTTTGTTGATGTGGAT 1380
Sbjct 1084 -------------------------------------------------------------------------- 1083
Query 1381 TCATCTTCAAGGAGAAATGCACAGAAAATCAACACTCTAATTGGTCAGATGGATTGCAGTTTGATTCCAGCTAA 1454
Sbjct 1084 -------------------------------------------------------------------------- 1083
Query 1455 CCTTGTGGAGGCATTTGGTTTATTGATTAACTGCAACGAGTCATCTCCCTGCCACCCATTTCTTCCTACTGTGC 1528
Sbjct 1084 -------------------------------------------------------------------------- 1083
Query 1529 AACACACTTTGAACAAAGCCATTAATCCTGAAGGGCTGTTTTATGCGGCTTCTAGACAGTTCACAACTGAAGAT 1602
Sbjct 1084 -------------------------------------------------------------------------- 1083
Query 1603 TTTGAAAAGCTATTGGCTTTTGCAAAGAATTTGAATGTAGAATTCAGCTTGGAAGCAGAAAGAATGACCCATGG 1676
Sbjct 1084 -------------------------------------------------------------------------- 1083
Query 1677 CTATTATCTAGCAAGTCGCAGAATCAGAACAGGCTCTGTATGTGGATCAAAGCTGTCAGCATCTGCATTAAAAT 1750
Sbjct 1084 -------------------------------------------------------------------------- 1083
Query 1751 ATCTG 1755
Sbjct 1084 ----- 1083