Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13327
- Subject:
- NM_001304284.2
- Aligned Length:
- 4221
- Identities:
- 207
- Gaps:
- 4011
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGACATGGTAGAGAATGCAGATAGTTTGCAGGCACAGGAGCGGAAGGACATACTTATGAAGTATGACAAGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ACACCGAGCTGGGCTGCCAGAGGACAAGGGGCCTGAGCCCGTTGGAATCAACAGCAGCATTGATCGTTTTGGCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTTTGCATGAGACGGAGCTGCCTCCTGTGACTGCACGGGAGGCGAAGAAAATTCGGCGGGAGATGACACGAACG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGCAAGTGGATGGAAATGCTGGGAGAATGGGAGACATATAAGCACAGTAGCAAACTCATAGATCGAGTGTACAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGGAATTCCCATGAACATCCGGGGCCCGGTGTGGTCAGTCCTCCTGAACATTCAGGAAATCAAGTTGAAAAACC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCGGAAGATACCAGATCATGAAGGAGAGGGGCAAGAGGTCATCTGAACACATCCACCACATCGACCTGGACGTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGGACGACTCTCCGGAACCATGTCTTCTTTAGGGATCGATATGGAGCCAAGCAGAGGGAACTATTCTACATCCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCTGGCCTATTCGGAGTATAACCCGGAGGTGGGCTACTGCAGGGACCTGAGCCACATCACCGCCTTGTTCCTCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTTATCTGCCTGAGGAGGACGCATTCTGGGCACTGGTGCAGCTGCTGGCCAGTGAGAGGCACTCCCTGCCAGGA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTCCACAGCCCAAATGGTGGGACAGTCCAGGGGCTCCAAGACCAACAGGAGCATGTGGTACCCAAGTCACAACC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CAAGACCATGTGGCATCAGGACAAGGAAGGTCTATGCGGGCAGTGTGCCTCGTTAGGCTGCCTTCTCCGGAACC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGATTGACGGGATCTCTCTCGGGCTCACCCTGCGCCTGTGGGACGTGTATTTGGTGGAAGGAGAACAGGTGTTG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ATGCCAATAACCAGCATTGCTCTTAAGGTTCAGCAGAAGCGCCTCATGAAGACATCCAGGTGTGGCCTGTGGGC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ACGTCTGCGGAACCAATTCTTCGATACCTGGGCCATGAACGATGACACCGTGCTCAAGCATCTTAGGGCCTCTA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CGAAGAAACTAACAAGGAAGCAAGGGGACCTGCCACCCCCAGCCAAACGCGAGCAAGGGTCCTTGGCACCCAGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CCTGTGCCGGCTTCACGTGGTGGGAAGACCCTCTGCAAGGGGTATAGGCAGGCCCCTCCAGGCCCACCAGCCCA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GTTCCAGCGGCCCATTTGCTCAGCTTCCCCGCCATGGGCATCTCGTTTTTCCACGCCCTGTCCTGGTGGGGCTG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TCCGGGAAGACACGTACCCTGTGGGCACTCAGGGTGTGCCCAGCCTGGCCCTGGCTCAGGGAGGACCTCAGGGT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TCCTGGAGATTCCTGGAGTGGAAGTCAATGCCCCGGCTCCCAACGGACCTGGATATAGGGGGCCCTTGGTTCCC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CCATTATGATTTTGAATGGAGCTGCTGGGTCCGTGCCATATCCCAGGAGGACCAGCTGGCCACCTGCTGGCAGG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CTGAACACTGCGGAGAGGTTCACAACAAAGATATGAGTTGGCCTGAGGAGATGTCTTTTACAGCAAATAGTAGT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AAAATAGATAGACAAAAGGTTCCCACAGAAAAGGGAGCCACAGGTCTAAGCAACCTGGGAAACACATGCTTCAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GAACTCAAGCATCCAGTGCGTTAGTAACACACAGCCACTGACACAGTATTTTATCTCAGGGAGACATCTTTATG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AACTCAACAGGACAAATCCCATTGGTATGAAGGGGCATATGGCTAAATGCTATGGTGATTTAGTGCAGGAACTC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGGAGTGGAACTCAGAAGAGTGTTGCCCCATTAAAGCTTCGGCGGACCATAGCAAAATATGCTCCCAAGTTTGA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGGGTTTCAGCAACAAGACTCCCAAGAACTTCTGGCTTTTCTCTTGGATGGTCTTCATGAAGATCTCAACCGAG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TCCATGAAAAGCCATATGTGGAACTGAAGGACAGTGATGGCCGACCAGACTGGGAAGTAGCTGCAGAGGCCTGG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GACAACCATCTAAGAAGAAATAGATCAATTATTGTGGATTTGTTCCATGGGCAGCTAAGATCTCAAGTCAAATG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CAAGACATGTGGGCATATAAGTGTCCGATTTGACCCTTTCAATTTTTTGTCTTTGCCACTACCAATGGACAGTT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ACATGGACTTAGAAATAACAGTGATTAAGTTAGATGGTACTACCCCTGTACGGTATGGACTAAGACTGAATATG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GATGAAAAGTACACAGGTTTAAAAAAACAGCTGAGGGATCTCTGTGGACTTAATTCAGAACAAATCCTACTAGC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AGAAGTACATGATTCCAACATAAAGAACTTTCCTCAGGATAACCAAAAAGTACAACTCTCAGTGAGCGGATTTT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TGTGTGCATTTGAAATTCCTGTCCCTTCATCTCCAATTTCAGCTTCTAGTCCAACACAAATAGATTTCTCCTCT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TCACCATCTACAAATGGAATGTTCACCCTAACTACCAATGGGGACCTACCCAAACCAATATTCATCCCCAATGG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AATGCCAAACACTGTTGTGCCATGTGGAACTGAGAAGAACTTCACAAATGGAATGGTTAATGGTCACATGCCAT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CTCTTCCTGACAGCCCCTTTACAGGTTACATCATTGCAGTCCACCGAAAAATGATGAGGACAGAACTGTATTTC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CTGTCACCTCAGGAGAATCGCCCCAGCCTCTTTGGAATGCCATTGATTGTTCCATGCACTGTGCATACCCGGAA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GAAAGACCTATATGATGCGGTTTGGATTCAAGTATCCTGGTTAGCAAGACCACTCCCACCTCAGGAAGCTAGTA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TTCATGCCCAGGATCGTGATAACTGTATGGGCTATCAATATCCATTCACTCTACGAGTTGTGCAGAAAGATGGG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AACTCCTGTGCTTGGTGCCCACAGTATAGATTTTGCAGAGGCTGTAAAATTGATTGTGGGGAAGACAGAGCTTT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CATTGGAAATGCCTATATTGCTGTGGATTGGCACCCCACAGCCCTTCACCTTCGCTATCAAACATCCCAGGAAA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GGGTTGTAGATAAGCATGAGAGTGTGGAGCAGAGTCGGCGAGCGCAAGCCGAGCCCATCAACCTGGACAGCTGT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CTCCGTGCTTTCACCAGTGAGGAAGAGCTAGGGGAAAGTGAGATGTACTACTGTTCCAAGTGTAAGACCCACTG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CTTAGCAACAAAGAAGCTGGATCTCTGGAGGCTTCCACCCTTCCTGATTATTCACCTTAAGCGATTTCAATTTG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TAAATGATCAGTGGATAAAATCACAGAAAATTGTCAGATTTCTTCGGGAAAGTTTTGATCCGAGTGCTTTTTTG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GTACCACGAGACCCGGCCCTCTGCCAGCATAAACCACTCACACCCCAGGGGGATGAGCTCTCCAAGCCCAGGAT 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TCTGGCAAGAGAGGTGAAGAAAGTGGATGCGCAGAGTTCGGCTGGAAAAGAGGACATGCTCCTAAGCAAAAGCC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CATCCTCACTCAGCGCTAACATCAGCAGCAGCCCAAAAGGTTCTCCTTCTTCATCAAGAAAAAGTGGAACCAGC 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 TGTCCCTCCAGCAAAAACAGCAGCCCTAATAGCAGCCCACGGACTTTGGGGAGGAGCAAAGGGAGGCTCCGGCT 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 GCCCCAGATTGGCAGCAAAAATAAGCCGTCAAGTAGTAAGAAGAACTTGGATGCCAGCAAAGAGAATGGGGCTG 3700
Query 1 -----------------------------------------ATGCAGGGGGTGGGCAGCCAACCAGAGCTGGTC 33
|||| |||.||||||||||||||||||||||
Sbjct 3701 GGCAGATCTGTGAGCTGGCTGACGCCTTGAGCCGAGGGCATATGC---GGGGGGGCAGCCAACCAGAGCTGGTC 3771
Query 34 ACTCCTCAGGACCATGAGGTAGCTTTGGCCAATGGATTCCTTTATGAGCATGAAGCATATGGCA---------- 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 3772 ACTCCTCAGGACCATGAGGTAGCTTTGGCCAATGGATTCCTTTATGAGCATGAAGCATGTGGCAATGGCTGTGG 3845
Query 98 --ATGGCTATAGCAATGGTCAGCTTGGAAACCACAGTGAAGAAGACAGCACTGATGACCAAAGAGAAGACACTC 169
|||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3846 CGATGGCTACAGCAATGGTCAGCTTGGAAACCACAGTGAAGAAGACAGCACTGATGACCAAAGAGAAGACACTC 3919
Query 170 ATATTAAGCCTATT-------TATATGCAATTTCATGCCATTCAGGAATTC----------------------- 213
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3920 ATATTAAGCCTATTTATAATCTATATGCAATTTCATGCCATTCAGGAATTCTGAGTGGGGGCCATTACATCACT 3993
Query 214 -------------------------------------------------------------------------- 213
Sbjct 3994 TATGCCAAAAACCCAAACTGCAAGTGGTACTGTTATAATGACAGCAGCTGTGAGGAACTTCACCCTGATGAAAT 4067
Query 214 -------------------------------------------------------------------------- 213
Sbjct 4068 TGACACCGACTCTGCCTACATTCTTTTCTATGAGCAGCAGGGGATAGACTACGCACAATTTCTGCCAAAGATTG 4141
Query 214 -------------------------------------------------------------------------- 213
Sbjct 4142 ATGGCAAAAAGATGGCAGACACAAGCAGTACGGATGAAGACTCTGAGTCTGATTACGAAAAGTACTCTATGTTA 4215
Query 214 --- 213
Sbjct 4216 CAG 4218
