Nucleotide Global Alignment

Description

• Query: ccsbBroad304_13415
• Subject: NM_001145356.1
• Aligned Length: 1128
• Identities: 530
• Gaps: 588

Alignment

Query    1  ATGTTACCGGCTGTTGGATCTGTGGATGAGGAAGAGGATCCTGCGGAGGAGGATTGTCCTGAATTGGTTCCCAT  74
            ||||||||||||||||||||||.|||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGTTACCGGCTGTTGGATCTGCGGATGAGGAGGAGGATCCTGCGGAGGAGGATTGTCCTGAATTGGTTCCCAT  74

Query   75  TGAGACGACGCAAAGCGAGGAGGAGGAAAAGTCTGGCCTCGGCGCCAAGATCCCAGTCACAATTATCACCGGGT  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TGAGACGACGCAAAGCGAGGAGGAGGAAAAGTCTGGCCTCGGCGCCAAGATCCCAGTCACAATTATCACCGGGT  148

Query  149  ATTTAGGTGCTGGGAAGACAACACTTCTGAACTATATTTTGACAGAGCAACATAGTAAAAGAGTAGCGGTCATT  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ATTTAGGTGCTGGGAAGACAACACTTCTGAACTATATTTTGACAGAGCAACATAGTAAAAGAGTAGCGGTCATT  222

Query  223  TTAAATGAATCTGGGGAAGGAAGTGCGCTGGAGAAATCCTTAGCTGTCAGCCAAGGTGGAGAGCTCTATGAAGA  296
            ||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TTAAATGAATTTGGGGAAGGAAGTGCGCTGGAGAAATCCTTAGCTGTCAGCCAAGGTGGAGAGCTCTATGAAGA  296

Query  297  GTGGCTGGAACTTAGAAACGGTTGCCTCTGCTGTTCAGTGAAGGACAATGGCCTTAGAGCTATTGAGAATTTGA  370
            |||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct  297  GTGGCTGGAACTTAGAAACGGTTGCCTCTGCTGTTCAGTGAAGGACAGTGGCCTTAGAGCTATTGAGAATTTGA  370

Query  371  TGCAAAAGAAGGGGAAATTTGATGACATACTGTTAGAGACCACTGGATTAGCAGACCCTGGTGCAGTGACTTCT  444
            |||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct  371  TGCAAAAGAAGGGGAAATTTGATTACATACTGTTAGAGACCACTGGATTAGCAGACCCTGGTGCAGTGGCTTCT  444

Query  445  ATGTTTTGGGTTGATGCTGAATTAGGGAGTGATATTTACCTTGATGGTATCATAACTATTGTGGATTCAAAATA  518
            ||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct  445  ATGTTTTGGGTTGATGCTGAATTAGGGAGTGATATTTATCTTGATGGTATCATAACTATTGTGGATTCAAAATA  518

Query  519  TGGATTAA------------AAGTGAAA-----------TACCAC-----------------------------  540
            ||||||||            |||.||||           ||.||.                             
Sbjct  519  TGGATTAAAACATTTAACAGAAGAGAAACCTGATGGCCTTATCAATGAAGCTACTAGACAAGTTGCTTTGGCAG  592

Query  541  --------------------------------------------------------------------------  540
                                                                                      
Sbjct  593  ATGCCATTCTCATTAATAAAACAGACCTGGTTCCAGAAGAAGATGTAAAGAAATTAAGAACGACAATTAGATCC  666

Query  541  --------------------------------------------------------------------------  540
                                                                                      
Sbjct  667  ATAAATGGACTAGGACAAATCTTAGAAACACAAAGATCAAGTTTGCAGAAAAAACTTCAGCATGTGCCAGGAAC  740

Query  541  --------------------------------------------------------------------------  540
                                                                                      
Sbjct  741  ACAACCTCACCTTGATCAGAGTATTGTTACAATCACATTTGAAGTACCAGGAAATGCAAAGGAAGAACATCTTA  814

Query  541  --------------------------------------------------------------------------  540
                                                                                      
Sbjct  815  ATATGTTTATTCAGAATCTCCTGTGGGAAAAGAATGTGAGAAACAAGGACAATCACTGCATGGAGGTCATAAGG  888

Query  541  --------------------------------------------------------------------------  540
                                                                                      
Sbjct  889  CTGAAGGGATTGGTGTCAATCAAAGACAAATCACAACAAGTGATTGTCCAGGGTGTCCATGAGCTCTATGATCT  962

Query  541  --------------------------------------------------------------------------  540
                                                                                      
Sbjct  963  GGAGGAGACTCCAGTGAGCTGGAAGGATGACACTGAGAGAACAAATCGATTGGTCCTCCTTGGCAGAAATTTAG  1036

Query  541  --------------------------------------------------------------------------  540
                                                                                      
Sbjct 1037  ATAAGGATATCCTTAAACAGCTGTTTATAGCTACTGTGACAGAAACAGAAAAGCAGTGGACAACACGTTTCCAA  1110

Query  541  ------------------  540
                              
Sbjct 1111  GAAGATCAAGTTTGTACA  1128