Construct: ORF ccsbBroad304_13415
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005278.1_s304c1, BRDN0000411322
- Derived from:
- ccsbBroadEn_13415
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CBWD5 (220869)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_13415
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_011517964.3 | 83.3% | 80% | (many diffs) |
| 2 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_017014458.1 | 74.8% | 73.1% | (many diffs) |
| 3 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_017014925.1 | 73.9% | 71% | (many diffs) |
| 4 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_005251517.5 | 73.3% | 70.4% | (many diffs) |
| 5 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015032.1 | 65.9% | 64.3% | (many diffs) |
| 6 | human | 220869 | CBWD5 | COBW domain containing 5 | NM_001286836.1 | 62.7% | 62.7% | 339_340ins201 |
| 7 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_017014455.1 | 61.5% | 60.2% | (many diffs) |
| 8 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746239.1 | 59.2% | 1_103del;644_912del | |
| 9 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746240.1 | 58.1% | 1_103del;644_929del | |
| 10 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015030.1 | 58% | 56.6% | (many diffs) |
| 11 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746238.1 | 57.3% | 1_103del;644_941del | |
| 12 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_428503.2 | 57.1% | (many diffs) | |
| 13 | human | 55871 | CBWD1 | COBW domain containing 1 | XR_001746353.1 | 56.8% | (many diffs) | |
| 14 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_929804.1 | 56.1% | (many diffs) | |
| 15 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_006716914.1 | 55.9% | 54.7% | (many diffs) |
| 16 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_006717116.1 | 55.8% | 54.4% | (many diffs) |
| 17 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_011517962.3 | 55.2% | 53.2% | (many diffs) |
| 18 | human | 150472 | CBWD2 | COBW domain containing 2 | XM_011510667.1 | 55% | 53.2% | (many diffs) |
| 19 | human | 150472 | CBWD2 | COBW domain containing 2 | XR_922864.1 | 54.6% | (many diffs) | |
| 20 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015027.1 | 54.2% | 53% | (many diffs) |
| 21 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746298.1 | 53.9% | (many diffs) | |
| 22 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746241.2 | 52.6% | 1_103del;644_1025del | |
| 23 | human | 150472 | CBWD2 | COBW domain containing 2 | XR_427073.2 | 52.5% | (many diffs) | |
| 24 | human | 220869 | CBWD5 | COBW domain containing 5 | NR_104600.1 | 51.7% | (many diffs) | |
| 25 | human | 220869 | CBWD5 | COBW domain containing 5 | NM_001024916.3 | 51.5% | 50.5% | (many diffs) |
| 26 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_005277640.2 | 51.4% | 50.2% | (many diffs) |
| 27 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_929802.1 | 51.4% | (many diffs) | |
| 28 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015036.1 | 51.3% | 50.2% | (many diffs) |
| 29 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_005251515.1 | 50.9% | 49.1% | (many diffs) |
| 30 | human | 150472 | CBWD2 | COBW domain containing 2 | XM_005263604.2 | 50.7% | 49.1% | (many diffs) |
| 31 | human | 644019 | CBWD6 | COBW domain containing 6 | XR_001746362.1 | 50% | (many diffs) | |
| 32 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_005272751.1 | 48.9% | 47.9% | (many diffs) |
| 33 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_005277639.2 | 48.8% | 47.6% | (many diffs) |
| 34 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_024447653.1 | 48.7% | 47.6% | (many diffs) |
| 35 | human | 150472 | CBWD2 | COBW domain containing 2 | XR_244814.2 | 48.3% | (many diffs) | |
| 36 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_005251514.1 | 48.2% | 46.6% | (many diffs) |
| 37 | human | 150472 | CBWD2 | COBW domain containing 2 | NM_001330337.1 | 48% | 46.6% | (many diffs) |
| 38 | human | 644019 | CBWD6 | COBW domain containing 6 | XR_001746363.1 | 48% | (many diffs) | |
| 39 | human | 220869 | CBWD5 | COBW domain containing 5 | NM_001363751.1 | 47.6% | 46.7% | (many diffs) |
| 40 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_005277637.2 | 47.5% | 46.4% | (many diffs) |
| 41 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015026.1 | 47.4% | 46.4% | (many diffs) |
| 42 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015035.1 | 47.4% | 46.4% | (many diffs) |
| 43 | human | 55871 | CBWD1 | COBW domain containing 1 | NM_001145356.1 | 46.9% | 45.3% | (many diffs) |
| 44 | human | 150472 | CBWD2 | COBW domain containing 2 | NM_001330336.1 | 46.8% | 45.3% | (many diffs) |
| 45 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_929803.1 | 46% | (many diffs) | |
| 46 | human | 644019 | CBWD6 | COBW domain containing 6 | XR_001746359.1 | 45.8% | (many diffs) | |
| 47 | human | 220869 | CBWD5 | COBW domain containing 5 | NM_001330668.1 | 45.3% | 44.4% | (many diffs) |
| 48 | human | 445571 | CBWD3 | COBW domain containing 3 | NM_201453.3 | 45.2% | 44.2% | (many diffs) |
| 49 | human | 644019 | CBWD6 | COBW domain containing 6 | NM_001085457.1 | 45.1% | 44.2% | (many diffs) |
| 50 | human | 55871 | CBWD1 | COBW domain containing 1 | NM_018491.3 | 44.7% | 43.2% | (many diffs) |
| 51 | human | 150472 | CBWD2 | COBW domain containing 2 | NM_172003.3 | 44.5% | 43.2% | (many diffs) |
| 52 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015025.1 | 43.9% | 43% | (many diffs) |
| 53 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_017014730.1 | 43.4% | 42.5% | (many diffs) |
| 54 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015024.1 | 43.4% | 42.5% | (many diffs) |
| 55 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015023.1 | 42.2% | 41.4% | (many diffs) |
| 56 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015022.1 | 41.7% | 40.8% | (many diffs) |
| 57 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746301.1 | 41.3% | 1_166del;605G>A;707_1305del | |
| 58 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746304.1 | 41.2% | 1_166del;605G>A;707_1308del | |
| 59 | human | 644019 | CBWD6 | COBW domain containing 6 | XR_001746361.1 | 40.9% | (many diffs) | |
| 60 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015021.1 | 40.6% | 39.8% | (many diffs) |
| 61 | human | 445571 | CBWD3 | COBW domain containing 3 | NM_001291821.1 | 40.2% | 39.4% | (many diffs) |
| 62 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_005272750.1 | 40.2% | 39.4% | (many diffs) |
| 63 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015020.1 | 40.2% | 39.4% | (many diffs) |
| 64 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_005251513.4 | 39.8% | 38.4% | (many diffs) |
| 65 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015019.1 | 38.7% | 38% | (many diffs) |
| 66 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746303.1 | 38.6% | 1_166del;605G>A;707_1393del | |
| 67 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746302.1 | 37.7% | 1_166del;605G>A;707_1428del | |
| 68 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_011517961.2 | 35.8% | 32.5% | (many diffs) |
| 69 | human | 55871 | CBWD1 | COBW domain containing 1 | NM_001145355.1 | 34.1% | 31% | (many diffs) |
| 70 | human | 150472 | CBWD2 | COBW domain containing 2 | NM_001330339.1 | 34% | 31.2% | (many diffs) |
| 71 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_002956768.1 | 32.2% | 1_103del;644_1674del | |
| 72 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746237.2 | 31.4% | 1_103del;644_1717del | |
| 73 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_002956784.1 | 31% | 1_166del;605G>A;707_1737del | |
| 74 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_002956769.1 | 30.9% | 1_103del;644_1747del | |
| 75 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_428504.1 | 29.9% | 1_103del;644_1804del | |
| 76 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746234.1 | 29.8% | (many diffs) | |
| 77 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746232.1 | 29% | (many diffs) | |
| 78 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746299.1 | 28.8% | 1_166del;605G>A;707_1867del | |
| 79 | human | 55871 | CBWD1 | COBW domain containing 1 | XR_001746352.1 | 28.7% | (many diffs) | |
| 80 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746297.1 | 28.1% | (many diffs) | |
| 81 | human | 150472 | CBWD2 | COBW domain containing 2 | NR_138473.1 | 27.6% | (many diffs) | |
| 82 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746300.1 | 27% | 1_166del;605G>A;707_1990del | |
| 83 | human | 150472 | CBWD2 | COBW domain containing 2 | NR_138474.1 | 26.2% | (many diffs) | |
| 84 | human | 644019 | CBWD6 | COBW domain containing 6 | XR_001746360.1 | 25% | (many diffs) | |
| 85 | human | 150472 | CBWD2 | COBW domain containing 2 | XR_002959242.1 | 18.2% | (many diffs) | |
| 86 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_017014457.1 | 15.3% | 14.6% | (many diffs) |
| 87 | human | 150472 | CBWD2 | COBW domain containing 2 | XM_024452717.1 | 14.4% | 13.7% | (many diffs) |
| 88 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_002956766.1 | 12% | (many diffs) | |
| 89 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746233.1 | 11.9% | (many diffs) | |
| 90 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746235.1 | 11.8% | (many diffs) | |
| 91 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746231.1 | 11.7% | (many diffs) | |
| 92 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_002956767.1 | 10.4% | (many diffs) | |
| 93 | mouse | 226043 | Cbwd1 | COBW domain containing 1 | NM_146097.3 | 39.2% | 37.4% | (many diffs) |
| 94 | mouse | 226043 | Cbwd1 | COBW domain containing 1 | NR_033744.1 | 23% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 606
- ORF length:
- 540
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgtt accggctgtt ggatctgtgg atgaggaaga ggatcctgcg gaggaggatt 121 gtcctgaatt ggttcccatt gagacgacgc aaagcgagga ggaggaaaag tctggcctcg 181 gcgccaagat cccagtcaca attatcaccg ggtatttagg tgctgggaag acaacacttc 241 tgaactatat tttgacagag caacatagta aaagagtagc ggtcatttta aatgaatctg 301 gggaaggaag tgcgctggag aaatccttag ctgtcagcca aggtggagag ctctatgaag 361 agtggctgga acttagaaac ggttgcctct gctgttcagt gaaggacaat ggccttagag 421 ctattgagaa tttgatgcaa aagaagggga aatttgatga catactgtta gagaccactg 481 gattagcaga ccctggtgca gtgacttcta tgttttgggt tgatgctgaa ttagggagtg 541 atatttacct tgatggtatc ataactattg tggattcaaa atatggatta aaagtgaaat 601 accactaccc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg 661 gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca 721 acctctggat ta