Nucleotide Global Alignment

Description

• Query: ccsbBroad304_13426
• Subject: XM_006524391.3
• Aligned Length: 2452
• Identities: 1832
• Gaps: 272

Alignment

Query    1  ATGGTGAAGCAGACTATCCAGATATTCGCGAGGGTGAAGCCCCCTGTCCGGAAGCACCAACAAGGGATTTATTC  74
            ||||||||||||||.||||||||.|||||.||||||||||||.|.||.||||||||.||.|||||||||||.||
Sbjct    1  ATGGTGAAGCAGACGATCCAGATTTTCGCTAGGGTGAAGCCCACCGTGCGGAAGCAGCAGCAAGGGATTTACTC  74

Query   75  CATAGATGAAGATGAAAAATTAATACCTAGCTTGGAAATCATCTTACCACGTGATTTGGCAGATGGGTTTGTGA  148
            |||||||||||||||||||||||..|.||||||||||||..|||||||.||.||..||||||||||.||.||.|
Sbjct   75  CATAGATGAAGATGAAAAATTAACGCATAGCTTGGAAATTGTCTTACCCCGAGACCTGGCAGATGGATTCGTAA  148

Query  149  ATAATAAGCGAGAAAGCTACAAATTTAAATTTCAAAGAATTTTTGATCAGGATGCAAACCAAGAGACCGTTTTT  222
            |.||.||.||||||||||||||.|||||.||||||||.||||||||.||.||.||.||.|||||||.|.||||.
Sbjct  149  ACAACAAACGAGAAAGCTACAAGTTTAAGTTTCAAAGGATTTTTGACCAAGAGGCTAAGCAAGAGATCATTTTC  222

Query  223  GAAAACATTGCCAAACCAGTTGCTGGGAGTGTCCTGGCAGGTTACAATGGTACCATCTTTGCATATGGGCAAAC  296
            ||.|.|||||||||||||||.||.|.||||..|.||||||||||||||||.||||||||.|||||||||||.||
Sbjct  223  GAGATCATTGCCAAACCAGTCGCCGAGAGTACCTTGGCAGGTTACAATGGCACCATCTTCGCATATGGGCAGAC  296

Query  297  AGGCAGCGGGAAGACATTCACTATCACAGGGGGTGCAGAGCGTTACAGTGACAGAGGCATTATCCCAAGGACAC  370
            .|||||.||.|||||||||||.||||||||.||.||||||||.|||||||||||||||||.|||||||||||.|
Sbjct  297  GGGCAGTGGCAAGACATTCACCATCACAGGCGGGGCAGAGCGCTACAGTGACAGAGGCATCATCCCAAGGACCC  370

Query  371  TGTCATACATTTTTGAACAGTTACAAAAGGACAGCAGCAAAATATATACAACACACATTTCCTATTTGGAAATC  444
            ||||.|||||||||||.|||||.|||||||||||||||||.||.||.||.|||||||||||.||.|||||||||
Sbjct  371  TGTCGTACATTTTTGAGCAGTTGCAAAAGGACAGCAGCAAGATCTACACGACACACATTTCTTACTTGGAAATC  444

Query  445  TACAATGAATGTGGTTATGATCTTTTGGATCCAAGACATGAAGCCTCCAGTTTGGAAGATTTGCCGAAAGTGAC  518
            |||||.||||||||.|||||.||..|||||||.|||||.||||||||||...||||||||.|||||||||||||
Sbjct  445  TACAACGAATGTGGCTATGACCTGCTGGATCCCAGACACGAAGCCTCCAAACTGGAAGATCTGCCGAAAGTGAC  518

Query  519  AATACTGGAGGATCCTGATCAGAACATTCACCTGAAAAACTTGACTCTCCATCAGGCAACCACAGAGGAAGAAG  592
            ||||.|||||||.|||||||||||||||||||||||||||.||.||||.|||||||||||.||.|||||.||||
Sbjct  519  AATATTGGAGGACCCTGATCAGAACATTCACCTGAAAAACCTGTCTCTGCATCAGGCAACAACTGAGGAGGAAG  592

Query  593  CTCTGAATTTGCTTTTTTTAGGAGACACCAACCGAATGATTGCAGAGACTCCTATGAACCAAGCTTCAACCCGT  666
            |||||||..||||.||.||.||.|||||||||.|.|||||.||.||||||||||||||.||||||||||||||.
Sbjct  593  CTCTGAACCTGCTCTTCTTGGGGGACACCAACAGGATGATCGCTGAGACTCCTATGAATCAAGCTTCAACCCGG  666

Query  667  TCCCACTGCATTTTCACCATTCATTTGTCAAGCAAGGAACCAGGATCTGCAACTGTACGACATGCCAAACTCCA  740
            ||.|||||.||||||||..|.||.|||...||||||||.|||||.|||||.||.||.||||||||.||.|||||
Sbjct  667  TCACACTGTATTTTCACTGTGCACTTGAGCAGCAAGGAGCCAGGTTCTGCCACCGTCCGACATGCTAAGCTCCA  740

Query  741  TCTGGTTGACCTGGCTGGTTCAGAGCGAGTTGCAAAGACTGGAGTAGGGGGCCATCTTCTAACAGAGGCCAAGT  814
            |||||||||||||||.||.||||||||.||..|.|||||||||||.|||||||..|||||.|||||||||||.|
Sbjct  741  TCTGGTTGACCTGGCAGGGTCAGAGCGTGTCTCGAAGACTGGAGTCGGGGGCCTGCTTCTGACAGAGGCCAAAT  814

Query  815  ATATCAACTTGTCACTACATTACTTAGAACAGGTTATCATTGCCCTTTCAGAAAAGCACCGTTCGCACATTCCT  888
            |.|||||||||||.|||||.|||.|.||.|||||.||||||||||||||.|||||.||||||.|.|||||.|||
Sbjct  815  ACATCAACTTGTCCCTACACTACCTGGAGCAGGTCATCATTGCCCTTTCGGAAAAACACCGTACACACATCCCT  888

Query  889  TATAGAAACTCCATGATGACCAGTGTCCTAAGAGACAGTTTGGGAGGGAACTGCATGACAACTATGATTGCAAC  962
            ||.||.|||||||||||||||||.||.||.|||||||||.|||||||||||||||||||.||.|||||||||||
Sbjct  889  TACAGGAACTCCATGATGACCAGCGTGCTCAGAGACAGTCTGGGAGGGAACTGCATGACCACCATGATTGCAAC  962

Query  963  ACTCTCCTTGGAGAAAAGGAATCTTGATGAGTCTATATCAACCTGCAGATTTGCACAGCGAGTGGCACTCATAA  1036
            .||.||.||||||||.|||||..|||||||||||||.||.||||||||||||||.|||||||||||.||.||.|
Sbjct  963  CCTGTCTTTGGAGAAGAGGAACATTGATGAGTCTATCTCCACCTGCAGATTTGCTCAGCGAGTGGCCCTAATTA  1036

Query 1037  AGAATGAAGCTGTTCTTAATGAAGAAATTAACCCCAGATTAGTGATTAAACGCCTACAAAAGGAAATCCAGGAA  1110
            |.||.|||||..||||.||.|||||.|||.|.|||||..|..|||||...|||.|.||||||||.||..|.||.
Sbjct 1037  AAAACGAAGCCATTCTCAACGAAGAGATTGATCCCAGGCTGATGATTGTTCGCTTGCAAAAGGAGATTGAAGAC  1110

Query 1111  CTGAAGGATGAACTGGCCATGGTCACTGGGGAGCAGAGGACAGAGGCACTCACAGAAGCAGAGCTCCTTCAGCT  1184
            .||||||..||..|||||||||.|||.||.|||||||||||||||||.|||||.||||||||||||||||||.|
Sbjct 1111  TTGAAGGCAGAGTTGGCCATGGCCACAGGAGAGCAGAGGACAGAGGCCCTCACGGAAGCAGAGCTCCTTCAGTT  1184

Query 1185  GGAAAAACTAATAACATCCTTTTTGGAAGACCAGGATTCAGACAGTAGATTAGAGGTTGGCGCGGATATGCGTA  1258
            |||||||||||||.||||||.||||||||||||.|||.||||.|||.||.|.||.||||||||.||||||||||
Sbjct 1185  GGAAAAACTAATAGCATCCTATTTGGAAGACCAAGATCCAGAGAGTCGACTGGAAGTTGGCGCTGATATGCGTA  1258

Query 1259  AAGTTCATCACTGTTTTCATCATTTAAAGAAACTATTGAATGACAAGAAGATCCTTGAAAACAATACAGTCTCC  1332
            ||.|.||||||||||||||||||||.|||||.||.||||||||||||||||.|||   |.|.|||||.||||||
Sbjct 1259  AAATCCATCACTGTTTTCATCATTTTAAGAAGCTGTTGAATGACAAGAAGACCCT---AGAGAATACTGTCTCC  1329

Query 1333  TCTGAAAGCAAAGACCAAGATTGTCAAGAACCATTAAAAGAAGAAGAATATAGAAAGCTACGAGATATTCTGAA  1406
            ||||||||||.|...||||..||.|||||||||||.|.|||.||||||||||.||||||.|.||.|.||||.||
Sbjct 1330  TCTGAAAGCACACGGCAAGCATGCCAAGAACCATTGAGAGATGAAGAATATACAAAGCTCCTAGGTCTTCTCAA  1403

Query 1407  ACAGAGAGATAACGAAATCAGTATCCT-----TTCTG------AAGTG--ATGAAGAAA---------------  1452
            .|||||.||.|||||.||||.||||||     .|.||      ||| |  |.|||||||               
Sbjct 1404  GCAGAGGGACAACGAGATCAATATCCTGGTCAATATGTTAAAAAAG-GAAAAGAAGAAAACTCAGGATGCCCTC  1476

Query 1453  --------------------------------------------------CTTCCTC-----------------  1459
                                                              ||||.||                 
Sbjct 1477  CAGAATTCAAGCCTAGAGAAAAGCGATACCAGGCCACCTCAGAACTCGCCCTTCATCGCTGGGAGCCCAGCGGT  1550

Query 1460  --------------TATCCT-----------------------------------------------GGTTTG-  1471
                          |.||||                                               .|.||| 
Sbjct 1551  CCCAAGGACCCCATTCTCCTCAGCCCCGAGCCACACCCAGGACCTCAGCATCTGCAGGCACAGATCCAGCTTGC  1624

Query 1472  ---------AAAGGGGAATGAGAGAGGAAATGTCATTAGGATGCCAGGAGGCTTTTGAAATCTTCAAGAGGGAC  1536
                     |||..||.|||||||||||.||||||.|.|||.||||||||||||||||.||.||||||||||||
Sbjct 1625  TCCACAAAAAAACAGGGATGAGAGAGGAGATGTCACTGGGACGCCAGGAGGCTTTTGAGATTTTCAAGAGGGAC  1698

Query 1537  CACGCTGACAGCGTTACCATCGATGACAACAAACAGATTCTGAAACAGAGATTTTCTGAAGCCAAGGCCCTGGG  1610
            |||||||||||.||.||||||||.||||||||||||.|||||||.|||||||||||||||||.||.||.|||||
Sbjct 1699  CACGCTGACAGTGTCACCATCGAGGACAACAAACAGGTTCTGAAGCAGAGATTTTCTGAAGCAAAAGCTCTGGG  1772

Query 1611  AGAAAGTATAAATGAAGCAAGAAGTAAAATTGGTCACCTGAAGGAAGAAATCACCCAGCGGCATATACAGCAAG  1684
            ||||||||||||||||||||||||||||||||||||.|||||.||.|..||||.|||||||||..|||||||||
Sbjct 1773  AGAAAGTATAAATGAAGCAAGAAGTAAAATTGGTCAGCTGAAAGATGCCATCAACCAGCGGCACCTACAGCAAG  1846

Query 1685  TAGCCCTAGGAATCTCGGAAAACA-TGGCCGTGCCTCTGATGCCAGACCAGCAGGAGGAGAAGCTGCGATCACA  1757
            ||||.||.||||||||.||.|||| ||.||..||||| .|.|||.||||..|||||||||||.||||||.||||
Sbjct 1847  TAGCTCTTGGAATCTCAGAGAACACTGTCCCAGCCTC-CACGCCTGACCCCCAGGAGGAGAAACTGCGAGCACA  1919

Query 1758  ACTGGAGGAAGAAAAGAGAAGGTATAAAACAATGTTCACTCGCCTGAAAGCCCTGAAGGTGGAGATCGAGCACT  1831
            .||||||||.||.|||.|.|||||.|||||....||.|..|.||||||.|||||||||||||||||.||||||.
Sbjct 1920  GCTGGAGGAGGAGAAGGGCAGGTACAAAACGGCCTTTATGCACCTGAAGGCCCTGAAGGTGGAGATAGAGCACC  1993

Query 1832  TGCAGCTGCTCATGGACAAAGCCAAGGTGAAGCTACAGAAAGAGTTTGAAGTCTGGTGGGCAGAGGAGGCCACC  1905
            ||||||||||||||||||||||||||||.|||||.|||||||||||.||.|.||||||||||||||||||||||
Sbjct 1994  TGCAGCTGCTCATGGACAAAGCCAAGGTCAAGCTGCAGAAAGAGTTCGAGGCCTGGTGGGCAGAGGAGGCCACC  2067

Query 1906  AACCTGCAGGTAAATTCTCCAGCAGTGAATTCACTC---GATCACACGAAGCCATTTCTCCAGACATCTGACTC  1976
            |.||||||||||||.||.||.||...|||   .|||   |||.....||||||.||||               |
Sbjct 2068  AGCCTGCAGGTAAACTCCCCGGCCACGAA---CCTCCAGGATGCTGTGAAGCCGTTTC---------------C  2123

Query 1977  CCAGCATGAACGGTCCCAACTCCTCTCTAACAAAAGTTCTGGAGGCTGGGAAGTCCAAGATCAAGGCACTGGCA  2050
            ||||||.||.|.|.|.||.||.|||||.||.|||||                                      
Sbjct 2124  CCAGCAGGACCAGGCACAGCTTCTCTCCAAGAAAAG--------------------------------------  2159

Query 2051  GATTCGAT-GTCTGTGATGTGAATGCCAGGAAAATCCTGCCCTCGCCTTGCCCCAGTCCA-CACAGCCAGAAAC  2122
                |||| |          |||||||||.|.||||||.|||||.||.||||||| .||| ||.|||||     
Sbjct 2160  ----CGATAG----------GAATGCCAGAAGAATCCTTCCCTCCCCCTGCCCCA-ACCAGCAAAGCCA-----  2213

Query 2123  AGAGCAGCACCAGCACCCCACTGGAAGACAGCATCC----CCAAG--AGGCCAGTGTCGTCCATCCCTCTCACC  2190
            ||||            ||||.||| ...|||..|||    .||||  |||||..|.||.||||||||||||||.
Sbjct 2214  AGAG------------CCCAGTGG-CTCCAGGGTCCTGGTGCAAGATAGGCCCCTATCATCCATCCCTCTCACT  2274

Query 2191  GGAGACAGCCAGACGGACTCGGACATCATCGCCTTCATCAAGGCCAGACAGAGCATTCTGCAGAAGCAATGTTT  2264
            ||||||||||||||.|||||.||||||.|.||.||||||||||||||||||||||||||.||||||.||||..|
Sbjct 2275  GGAGACAGCCAGACAGACTCCGACATCCTAGCATTCATCAAGGCCAGACAGAGCATTCTACAGAAGAAATGCCT  2348

Query 2265  GGGAAGCAAT  2274
            |||||||||.
Sbjct 2349  GGGAAGCAAC  2358