Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13497
- Subject:
- NM_001368062.1
- Aligned Length:
- 6897
- Identities:
- 671
- Gaps:
- 6225
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGATACCTTGGAGTATATTCTTGCTTCATGTACTGCTGTTTTCATTACAAGAATATATTTGTGCATCGTCTAT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATTGATGGGAACATCAAAAAACGGGTTTAATGAAAATCGACAGAAAAGAGCTCTTTTAGCAGCACAGTTTGAAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTACTTCTCCGAGATACTTTTTCCATGATGCTATTAATTGGGGTGAGAGCAAAATAAAAGGTTCTTGTCCTTAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAATGCCTTAATGGAGCTTTCTGTTCTAAGACTGGAACATGTGACTGTCAAATATTTCAGGCTCTTGGGACAAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATGCCAGATCATCCCAAACATGGGCAACGGCAGAGATGGGATTTGTAAAACCTGGGGACAGTATCATTTTGAAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CATTCGATGGCATCTACTATTACTTCCCAGGAAACTGTTCTTACATTTTTGCAAAGGACTGTGGTGATTTGGAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCTCGGTACACTGTATGGGTTCATAACAGCCCTAAATGCCTTGGTTCGGTGTATTCTTGTTATCGGTCAATCAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTTGTTCTTTTCAAACCAAGAGGAAATTCGAATTTATGGTCATGAAATAAAAAAGAATGGAATCAGTTTAACAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGCCTCAGACAATTGGACAGATTTTCATTGAGAAACTAGCTGACTACATTCTTGTGAAAACAACCTTTGGCTTT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TCATTGGCTTGGGACGGGATATCTGGGATCTACCTCAAGCTGTCTGAGGACCATAAGGGGAAATCATGTGGCCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ATGTGGAAACTACAATGACATTCAATCTGATGATTTCATAATTCTGCAAGAGGACTATACAGAAGACATCGCTA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGTTTGCAAATAGTTGGTCGGTGCAAACTCCAGATGACACCAAATGTGTACTCACACCCTCAGATTTTCCAAAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCGTGCTCCAGTGGAATGCCAGCATTTGAGGCAATCTTCTTCAAGTGTCAGATACTGTTGCAGTTTCCTTTTCT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GAGCTGCCATGAGTATATCGATCCATACTTATATATTGCCAGCTGTGTTAATGATCTTTGCAAAACTGATGATG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATGAAACCTATTGCCGAGCAGCCACTGAGTATGCTAGAGCCTGCTCTCATGCTGGCTACCCTATTCAAGACTGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGAGATGACTTTCCAGCATGCACTGATAAATGTGATGATAGCTTTGTCCATCGGGACTGTATCAGTTGTTGTCC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACCAACCTGCACATTTGAGAAGCAATGTCTTGGGAGCAATCTCCATTGTCTTGATGGATGTTACTGCCCAGATG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GCCTCGTAATGGACAATGGGACTTGCATCTCCTTGGAAAATTGCCCATGCGGTTTTCATGGATTAGCTTATTCA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GTTGGTTCAAAAATTGAACAAGAATGTACTGAATGTGTGTGTGTTGGTGGAGTTTGGAACTGCACTGAGCAAGA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTGTCCAGTTCAATGCTCAGTTGTAGGTGATTCTCACTTTACAACTTTTGATGGTCGACATTATTCTTTTATTG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCATGTGCCAATACATCCTCGTGAAAGGAACTGGAAAAGATAAATTCACGATTACTTTACAGAAAGCTCCCTGT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GAGCAGAATCTTGGCTTGGTCTGCCTTCAGTCTATAACTCTGATTCTGGAGGATGATTTTAACAAACAAGTGAC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CCTTGGTAGGGGAGGACAAATTCTCACTAGTCCTAACCAAGGCTTCAACCTGAATGGTATTGTTGAAATTCAAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CTCTGTCATCCTTATTTATACTTCTAAAAACCACATTTGGTTTAAAGATTCTGTTTGCTATAGATGGGGAAAGA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ATTTATATTCAGCTTACTAGCGCATGGAAAAGAAGAACATTAGGTCTGTGTGGCACTTTTAATGGCAACATAAG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GGATGATTTTCTTTCTCCATCAGGCATGATAGAAGGTACACCACAACTTCACGCAAATGCGTGGAGAGTTTCTT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CTACCTGTTTTGCACCTGTTCATGTCCCAGTGGTGGACCCCTGTAACATCAATCAACAAAACATTGGGTATGCA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GCACACTGTGATGTCATCCACCAGGAGCTCTTTGCTCCTTGCCACATCTATATTAGCCCTGGGCTGTACTATCA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GCTATGCCGCCACGATGCATGCAAGTGTGGAAGCTCCTGCCTGTGCAATGCTCTTGCCCACTATGCCTACCTCT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GCGGCCAGCACGGTGTTCCCATTGATTTCAGAACTCAGATTTCTTTCTGTGCTGTGGTGTGCCAGAAGGGCATG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CTGTACCATCACTGTTCCTCGTTCTGCCTCCATTCCTGCATTTCTCTCTCTTCCCCGGAGCAGTGCAGTGATGA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CTGTGCTGAAGGCTGTAATTGTCCGGAAGGCAAATTCTATGAAGACACTCTTAACTTTTGTGTACCCATATTCC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ACTGCCGTTGTCATTATAGGGGCAGTGTTTATCAACCTGGAGAGCTCATCCCCACACCCTCGGGCTTATGCCAG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TGTTCAAATGGGACTGTGAAATGTGATGAATTAGCAACGCCCTCTGCTGTTCACATCTGCCCAGAGGGAAAAGA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GTATTTCGACTGCAGGTTTCCTGACCCTGAATTACCAGCTGGTGGTGTTAATTGTGAGACTACATGTGCAAACC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TAGCCATGAACTTCACCTGCACCCCATCCTCACCCTGTATAAGTGGCTGTGTTTGTGCTCCAGGAATGGCAGAG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CACAGAGGAAAGTGTTATGTTCCTGAAAGCTGCCCATGTATTTGGAAAGATTGGGAGTATCTCTCAGGAGAAGT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GATTGCTACACCGTGTTACACCTGCGTTTGTCGACGAGGAATGTTCAATTGCACATATTATCCATGCCCAGCAG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TGTGCACAATATACGGGGACCGACATTATTATTCTTTTGATGGACTAGAATATGACTATATCAGTGATTGCCAG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GTGTTTTTGATAAAGAAACAATCAGGTTTTTTTCTGGAAAACAAATCTACCTACCAGCTTTGGAAGGCTGGTTA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CTATATAGTAGTATACTTTCCAGAGAAAGATATCACTATTCTTTGGGATAGGAAGACAACTATTCATATCAAAG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TTGGGCCACAGTGGAAGAACAAGCTATCAGGATTGTGTGGAAACTTTGACAAATGCACTTCAAATGATATGACC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 ACATCTAATAACTTGGAAGTGAGAAATGCTCGGGTATTTGGAGATAGTTGGGCATTAGGACAGTGTGAAAGTCC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 AGATGAAACAATTAAACCCTGTGAGGCACATCAAAACAAATTTCCTTATGCCAAGAAAGAATGCTCCATTTTGT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 ACAGTGATATTTTTGCTTCTTGTCGCAATGTGATTGACGTTACTTCTTTTGCCAAAAATTGTCATGAAGATACA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TGTAACTGCAATCTTGGTGGCGACTGTGAGTGTTTGTGCACTAGTATAGCTGCATATGCATACAAGTGTTGTCA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 GGAAGGAATATCAATTCATTGGAGATCATCTACTGTTTGTTCACTTGATTGTGAATACTACAATGAAGGACTTG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 GAGAAGGACCATATATGCTGGCAAGCTATGGGCAGAGTGGCCTTGTTCTGGGGGCCAATATGACCAGCAGAAGC 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GTTTTCTGTTTGCCGAGAAGCAGTGTTCATACCAGTTTATTTTTTTATTTTATGATCACTCCAGGCCTTTTCAA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 AGAGAAGGTATCATCATTAGCACTTGTTTCCTTGGAATCTGCTGAAAGGCCAAACTACTTTCTCTATGTCCATG 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 ACAATGATACTCTTAGCTTGGAGCTGTGGGAGGCGAATTCAGCCTTTCATCGGAGAGCAACATTTTTCCACCAT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 CAGGGCCTCTGGATTCCTGGTTACAGTGCATTTGAGTTATACAGCAAGAAAGGCTTTTTCATCATATTCACAGA 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 TTCTAGTGTCAAAGCATCAAAATATGATGATTCTGAAGAATTTAAACATTCAAGTAGCTTCAGCATAGAAGAAA 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TCCAGGCAGCAGTGCCTTACAGGAAGATGTGTGAATGGAGATATGAACCTTGTGCTACACCCTGTTTTAAAACA 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 TGTAGTGACCCTGAAGCACTAGCATGTAAATTTCTTCCACCGGTTGAAGGATGCTTGCCCTACTGCCCTAAAAA 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 TATGATCCTTGATGAGGTCACCCTCAAGTGTGTTTATCCACGAGACTGTATACCTGTGATTCCCACAGAACCAA 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 CATTAATGCCACCAGCTAAGCCAACTGTGCCCATGTTTACAGTTTGGGAAATGATTACTCCATCAGACATCACT 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 GTGTTTGATATGCTAACACCAACTACAGGCTTGGAATGTGAGCCTCAGAAATTTGATCCTGTTTATGATTGTAG 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 CCAATACATATGCCTTAATATGGAATGGCAGTTATACAACTGGTCCCTTAATTGCCCAAAGGACGTGGAAATGC 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 CTGACTGTGGTTTCCGAGGAAGGCCAGTTCAAGTGAACAGTGATATCTGCTGCCCTGAGTGGGAATGTCCTTGT 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 CGGTGTTCCATGTTGTCAGAACTGAGCATTATTACATTTGATGGAAACAACGCAGCATTATATAGCATGGCTTC 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 TTATATCTTAGTAAGAATTCCTGGTGAAATTATAGTTGCTCATATCGAAAAATGTTCCATGAATCAGAATGGAA 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 ACTCCTTAAAAAAGCTAGCTCCCTCTGGAAGAATCTCTGGACTTTGTTTTAAGAAGTTAAATGTGACAACACCC 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 ATACATAAAATAATTGTCAATCGGTTGGCAAGAAAGGTAGAAGTGGATTCCATTGTTGTGCCTTTGCCCTTTTC 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 AAGTCAGGAACTGTCCATAGAGGATTCTGGTTCAATGTATGTAATTACTACTCCAGCTGGACTAATCATAAAGT 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 GGTCTCATCTTACAGGAATCATAGACATTCATTTTGGCTTCCGATTTAACTTGTCATCCTACACAGAAGGACTC 4884
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4885 TGTGGAATTTGCAATGAAGATCCGGATGATGATCTAAGGATGCAAAATGGCACAATTATTACAAATATGGAAGA 4958
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4959 CATAGGATTATTTATTGAGAGCTGGGAAATTGAGAAATCATTTGAAGTAACAATGAGAAGACCTGTTAGGAATT 5032
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5033 GTACTGAGCATGATTGCAGCCAGTGCATTGATTTATTAAATAGAAGAATTTTCATTCCATGTCATGATAAAGTT 5106
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5107 TCACCGGAAGACTTTTGTGAAAAGATGTGGATCAATTATACCTATTTTTGGAACTATGAATGTGATGCACTTTC 5180
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5181 TGCATATGTGGCTCTGTGCAACAAGTTTGATATCTGTATTCAGTGGAGAACACCTGATTACTGCTCCCTGAGTT 5254
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5255 GCCCAGAGGGGAAGGAATATCAACCCTGTGTGCGACCTTGTGAAGCAAGAACATGCCTGAACCAATGGTTCTAT 5328
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5329 GGACACACTTCCTGTTTGAATCTAAGAGAAGACTGTGTGTGCAAAGTTGGAACTATTCTTCACAGGCCACATTC 5402
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5403 AGCCCAGTGCATTCCAGAGAAAGAGTGTGCATGCACTGATAGTGAAGACCAACCCCGCACTGCTGGGGAGATTT 5476
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5477 GGAATGGGGGCATTGATGAATGCACTCTATACAAATGTTTGGAGAATGGAAGCATTATCCCTATAGAACCTGAC 5550
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5551 TGTGATGAAGAGCCCACGCCAGTTTGTGAACGAGAAGCTGAAGTTGTCATGGGCATCATTGATAAATGGACCTG 5624
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5625 CTGTTCAAAGGAAGTTTGTGGATGTGACACGACTTTGTGTGAAACTAGCATTCCAACATGTACAAATAGTCAAA 5698
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5699 AATTGATTGTTGGCCACAGTCCTCTTTCTTGCTGTCCACAGTACAAATGTGAATGTGACCCATTGAAATGCCCC 5772
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5773 AGTATTTCAACACCAGAATGCAGAGAAGATCAATTCATGATTCAAGTTCGACAGGAAGAACCTTGTTGTTTTTC 5846
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5847 CCCTTTTTGTGTTTGTGAATCTTGCACCAAACCTGTTCCACTATGTCATGATGGGGAATTTCTCACAGTAGATC 5920
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5921 TTAATAGCACACACTTCTGTTGTCCTCAGTATTACTGTGTATGTGAACCAAACCTTTGTCCTATGCCATTACTC 5994
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5995 AACTGTGCAGAAGATATGAATCTTGTGAAAGAAAATGTATCTGGTCAATGTTGCCCAACATGGCACTGTGAATG 6068
Query 1 -------------------------------------------------------------------------- 0
Sbjct 6069 TAACTGTGAAAACCTTATTATGCCAACTTGTGAAGTGGGAGAATTTACTGCAATAGACCATAACTTCCAGAGTG 6142
Query 1 -------------------------------------------------------------------------- 0
Sbjct 6143 ATTGTGGATGCATACAGTATCTCTGTGAAAAGGATGATGTGTGTGTATTTCAAGAAGTATCAGTATTGAATCCT 6216
Query 1 ---------ATGATAAAGTATTTGGAAGAAGACTTTTGTTATGCTATAGAGTGTCTGGAAGAAAAAGATAACCA 65
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6217 GGACAATCCATGATAAAGTATTTGGAAGAAGACTTTTGTTATGCTATAGAGTGTCTGGAAGAAAAAGATAACCA 6290
Query 66 TACAGGCTTTCACACTCTGAATTTTACACTGGTGAATTGTTCAAAAAAATGTGATGTTCACCAGGTATATACTC 139
|||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6291 TACGGGCTTTCACACTCTGAATTTTACACTGGTGAATTGTTCAAAAAAATGTGATGTTCACCAGGTATATACTC 6364
Query 140 CATCCCCAAGTGATTATGGTTGTTGTGGTACCTGCAAAAATGTATCCTGCAAATTTCACATGGAAAATGGAACA 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6365 CATCCCCAAGTGATTATGGTTGTTGTGGTACCTGCAAAAATGTATCCTGCAAATTTCACATGGAAAATGGAACA 6438
Query 214 TCAGTTGTATACGCGGTAGGGAGTACCTGGCACTACAATTGCACCACATATGAATGTGTTAAAACTGATGAAGG 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6439 TCAGTTGTATACGCGGTAGGGAGTACCTGGCACTACAATTGCACCACATATGAATGTGTTAAAACTGATGAAGG 6512
Query 288 AGCAATAATTCTGAACTACACAATGGTCTGTCCCCCTTTTAATGAGACTGAATGCAAAATGAATGAAGGGATTG 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6513 AGCAATAATTCTGAACTACACAATGGTCTGTCCCCCTTTTAATGAGACTGAATGCAAAATGAATGAAGGGATTG 6586
Query 362 TGAAGCTTTATAATGAAGGCTGTTGCAAGATCTGCAAACGAGAAGAAAGAATATGCCAGAAAGTGATCATTAAA 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6587 TGAAGCTTTATAATGAAGGCTGTTGCAAGATCTGCAAACGAGAAGAAAGAATATGCCAGAAAGTGATCATTAAA 6660
Query 436 TCGGTCATAAGGAAACAGGACTGTATGAGCCAAAGCCCTATAAATGTTGCATCTTGTGACGGCAAATGCCCATC 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6661 TCGGTCATAAGGAAACAGGACTGTATGAGCCAAAGCCCTATAAATGTTGCATCTTGTGACGGCAAATGCCCATC 6734
Query 510 AGCTACCATATATAACATCAATATTGAAAGTCACCTAAGATTCTGCAAGTGTTGTCGTGAAAATGGAGTACGAA 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6735 AGCTACCATATATAACATCAATATTGAAAGTCACCTAAGATTCTGCAAGTGTTGTCGTGAAAATGGAGTACGAA 6808
Query 584 ACTTGTCTGTGCCTCTGTATTGCTCAGGAAATGGCACTGAAATTATGTACACTCTCCAGGAACCCATAGACTGT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6809 ACTTGTCTGTGCCTCTGTATTGCTCAGGAAATGGCACTGAAATTATGTACACTCTCCAGGAACCCATAGACTGT 6882
Query 658 ACGTGCCAGTGGAAT 672
|||||||||||||||
Sbjct 6883 ACGTGCCAGTGGAAT 6897
