Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13547
Subject:
XM_017006237.2
Aligned Length:
2871
Identities:
1929
Gaps:
930

Alignment

Query    1  ATGAACTTGGGAGATGGTTTAAAGCTTGAAACTGAATTACTGGATGGAAAAACCAAGCTAATATTGTCTCCATA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TGAACATAAATCAAAAATTTCTGTGAAGATGGGAAATAAGGCCAAGATTGCAAAATGTCCTTTAAGAACAAAAA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CTGGGCACATTCTAAAATCAACACAAGATACTTGTATTGGGAGTGAAAAACTTTTGCAAAAGAAGCCAGTTGGT  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TCAGAAACATCACAGGCAAAAGGTGAAAAAAATGGAATGACTTTTTCATCCACTAAGGATTTATGTAAACAATG  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  TATAGATAAAGACTGTCTTCATATCCAGAAAGAGATTTCACCTGCAACTCCTAATATGCAGAAGACTAGAAACA  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  CCGTAAATACATCTCTAGTAGGTAAACAGAAGCCTCACAAAAAACACATCACAGCTGAAAACATGAAGAGCAGT  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  TTGGTGTGTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCT  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  GACTGAGAATGGAAAGGAGGCAAAAAGTCAATATAGTCTATATTTAAACAGTATTTCTAATCAGCCAAAGGATG  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  AGAACATTATGGGATTATTCAAAAAAACTGAAATGGTTTCATCTGTCCCAGCTGAAAATAAATCTGTCTTAAAT  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  GAACATCAGGAGACATCTAAACAGTGTGAGCAAAAAATTGCCATAGAGAATGAATGGAAACCAGCTGATATATT  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  CAGTACTCTGGGGGAAAGGGAATGTGATAGAAGTTCGTTGGAAGCAAAAAAAGCCCAGTGGAGGAAAGAGCTAG  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  ATGAACAGGTTGCTTTAAAGAAGAAAGAAAAAGAAGTTTCTGAAAAATGGAATGATCCTTGGAAAAAATCTGAA  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  AGTGATAAAATAATATGGGAAAAACATCAAATT----CTTGAC-CAATCTAG-GGAAACAGTACTGCTGGAGCA  956
                          |||||..|..|| |||.||    ||.|.| .|.|.||| |||||||||||||||||||||
Sbjct    1  --------------ATGGGGCATTCA-CAACTTAGAGCTAGTCAGACTTTAGAGGAAACAGTACTGCTGGAGCA  59

Query  957  CCCTTTCAGTGCTGTGAAACAAGAACTGCAGAGAAAATGGATTGAAGAGTTGAATAAGCAAATAGAAGATGACC  1030
            ||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct   60  CCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAAATGGATTGAAGAGTTGAATAAGCAAATAGAAGATGACC  133

Query 1031  GTCAAAGAAAAATAGAGGAAAAAATTATATATTCAAAGGGTGAGGAACATGACAGATGGGCAATGCACTTTGAT  1104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  134  GTCAAAGAAAAATAGAGGAAAAAATTATATATTCAAAGGGTGAGGAACATGACAGATGGGCAATGCACTTTGAT  207

Query 1105  TCATTAAAGAGTTATCCTGGTTCTCAATCTCAGCTGTTCTCTCGGTCAACACACAAACAACCTGAGTACTTCTG  1178
            |||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct  208  TCATTAAAGAGTTATCCTGGTTCTCAATCTCAGCTGTTCTCTCAGTCAACACACAAACAACCTGAGTACTTCTG  281

Query 1179  TGTCTCTCCTGACACTCAGGAGCTGGCTGATGTCAGCAGTGTTTGTACACCTACAACCGGAAGCCAGGTTGAAC  1252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  282  TGTCTCTCCTGACACTCAGGAGCTGGCTGATGTCAGCAGTGTTTGTACACCTACAACCGGAAGCCAGGTTGAAC  355

Query 1253  CTTCAGAGGAGGAGCATATAGCAAAACCTATTAAGGATGTGGTTATGGCAAACAGTAAGAAAACAAACTTTCTC  1326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  356  CTTCAGAGGAGGAGCATATAGCAAAACCTATTAAGGATGTGGTTATGGCAAACAGTAAGAAAACAAACTTTCTC  429

Query 1327  CGTTCTATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACAGACGACGACAAAAACAATTAGAGCA  1400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  430  CGTTCTATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACAGACGACGACAAAAACAATTAGAGCA  503

Query 1401  TCAGAAAGCCATCACTGCCCAGGTAGAAGAGAAGCGCAGGAAGAAACAACTGGAGGAAGAGCAAAGAAAGAAGG  1474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  504  TCAGAAAGCCATCACTGCCCAGGTAGAAGAGAAGCGCAGGAAGAAACAACTGGAGGAAGAGCAAAGAAAGAAGG  577

Query 1475  AAGAACAAGAAGAGGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACAGTATGAAGAAGACATACTT  1548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  578  AAGAACAAGAAGAGGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACAGTATGAAGAAGACATACTT  651

Query 1549  AAGCAAAAACAAAAGGAAGAAATCATGACTCTCAAGACAAATGAGCTATTCCAGACAATGCAGCGAGCACAGGA  1622
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  652  AAGCAAAAACAAAAGGAAGAAATCATGACTCTCAAGACAAATGAGCTATTCCAGACAATGCAGCGAGCACAGGA  725

Query 1623  ACTGGCACAGAGACTAAAACAAGAACAAAGAATCCGAGAATTGGCGCAAAAGGGACATGACACTTCTAGACTGA  1696
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  726  ACTGGCACAGAGACTAAAACAAGAACAAAGAATCCGAGAATTGGCGCAAAAGGGACATGACACTTCTAGACTGA  799

Query 1697  TTAAAAATCTTGGT------------------GTTGATACAATACAAATGGAATATAATGCATCTAACATTTCA  1752
            ||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||
Sbjct  800  TTAAAAATCTTGGTGGTGATTTCTCTTTGCCAGTTGATACAATACAAATGGAATATAATGCATCTAACATTTCA  873

Query 1753  AATTCAAGACATGATTCTGATGAAATCAGTGGTAAAATGAATACATATATGAATTCTACGACTTCTTCTAAGAA  1826
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct  874  AATTCAAGACATGATTCTGATGAAATCAGTGGTAAAATGAATACATATATGAATTCTACGA---CTTCTAAGAA  944

Query 1827  GGATACTGGTGTGCAAACAGATGACTTAAATATAGGAATATTCACCAATGCAGAATCACATTGTGGATCATTAA  1900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  945  GGATACTGGTGTGCAAACAGATGACTTAAATATAGGAATATTCACCAATGCAGAATCACATTGTGGATCATTAA  1018

Query 1901  TGGAGAGGGACATCACAAATTGTTCATCTCCTGAGATTTCGGCAGAACTTATTGGACAGTTTAGCACCAAGAAA  1974
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019  TGGAGAGGGACATCACAAATTGTTCATCTCCTGAGATTTCGGCAGAACTTATTGGACAGTTTAGCACCAAGAAA  1092

Query 1975  AACAAGCAAGAACTAACTCAGGATAAAGGAGCCAGCTTAGAAAAAGAAAACAATCGGTGTAATGACCAGTGTAA  2048
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093  AACAAGCAAGAACTAACTCAGGATAAAGGAGCCAGCTTAGAAAAAGAAAACAATCGGTGTAATGACCAGTGTAA  1166

Query 2049  TCAGTTCACAAGAATAGAGAAACAAACAAAACACATGAAGAAATATCCTAAAAGGCCTGATTGGAATATAAATA  2122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167  TCAGTTCACAAGAATAGAGAAACAAACAAAACACATGAAGAAATATCCTAAAAGGCCTGATTGGAATATAAATA  1240

Query 2123  AGCCACCTAAAAGGTATATTCCAGCATCAGAAAAGTACCCTAAACAGCTTCAAAAGCAGAGAGAAGAAAAAAAA  2196
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241  AGCCACCTAAAAGGTATATTCCAGCATCAGAAAAGTACCCTAAACAGCTTCAAAAGCAGAGAGAAGAAAAAAAA  1314

Query 2197  GTAAGGAGGCAGATGGAATTGCTTCATTTGGTAGAAAAAAATAATCCTGGGCACCTCTCTCAAAACAGAGGCAT  2270
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315  GTAAGGAGGCAGATGGAATTGCTTCATTTGGTAGAAAAAAATAATCCTGGGCACCTCTCTCAAAACAGAGGCAT  1388

Query 2271  TTCACCAGAAATTTTTCATTCATCTCATCAAGAAACGGAGTCAAAGTTGAGGTGGCATCTAGTCAAAAAGGAAG  2344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389  TTCACCAGAAATTTTTCATTCATCTCATCAAGAAACGGAGTCAAAGTTGAGGTGGCATCTAGTCAAAAAGGAAG  1462

Query 2345  AAGAGCCTCTGAATATTCATTCATTCAGCAAGGAAAGGTCTCCATCATCACCAGTTCCAGTAGTGAAAAACAGA  2418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1463  AAGAGCCTCTGAATATTCATTCATTCAGCAAGGAAAGGTCTCCATCATCACCAGTTCCAGTAGTGAAAAACAGA  1536

Query 2419  ACCCAACAAACTCAAAATACATTACATTTACCACTAAAAAACAGTAGCTATGAGAGAGAGAATTTGATCTCAGG  2492
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1537  ACCCAACAAACTCAAAATACATTACATTTACCACTAAAAAACAGTAGCTATGAGAGAGAGAATTTGATCTCAGG  1610

Query 2493  AAGTAATCAAACAGAATTATCATCTGGGATTTCTGAATCATCCCATTTTATTCCGTATGTTCGAACAAATGAGA  2566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611  AAGTAATCAAACAGAATTATCATCTGGGATTTCTGAATCATCCCATTTTATTCCGTATGTTCGAACAAATGAGA  1684

Query 2567  TCTATTACCTTGATCCCGATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATTCACAAGAC  2640
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1685  TCTATTACCTTGATCCCGATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATTCACAAGAC  1758

Query 2641  TGTGGCCAAAAACGACAGCTATTTGATTCTGACTGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAA  2714
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1759  TGTGGCCAAAAACGACAGCTATTTGATTCTGACTGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAA  1832

Query 2715  TAGGGATCGACAGCAAGCAATCCTTAAGGGACTTTCAGAACTGAGACAGGGCCTTCTCCAGAAGCAAAAGGAGT  2788
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1833  TAGGGATCGACAGCAAGCAATCCTTAAGGGACTTTCAGAACTGAGACAGGGCCTTCTCCAGAAGCAAAAGGAGT  1906

Query 2789  TGGAAAGTAGTCTCCTGCCTTTAGCTGAAAATCAAGAAGAGAGTTTTGGTTCTTCATTT  2847
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907  TGGAAAGTAGTCTCCTGCCTTTAGCTGAAAATCAAGAAGAGAGTTTTGGTTCTTCATTT  1965

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.