Construct: ORF ccsbBroad304_13547
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016999.1_s304c1, BRDN0000408331
- Derived from:
- ccsbBroadEn_13547
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC66 (285331)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_13547
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 285331 | CCDC66 | coiled-coil domain containi... | NM_001141947.3 | 99.7% | 99.7% | (many diffs) |
2 | human | 285331 | CCDC66 | coiled-coil domain containi... | NM_001353147.1 | 99.1% | 99.1% | (many diffs) |
3 | human | 285331 | CCDC66 | coiled-coil domain containi... | NM_001353148.1 | 99.1% | 99.1% | (many diffs) |
4 | human | 285331 | CCDC66 | coiled-coil domain containi... | NM_001353149.1 | 99% | 99% | (many diffs) |
5 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_005265082.4 | 98.4% | 98.4% | (many diffs) |
6 | human | 285331 | CCDC66 | coiled-coil domain containi... | NM_001353150.1 | 97.3% | 97.3% | (many diffs) |
7 | human | 285331 | CCDC66 | coiled-coil domain containi... | NM_001353151.1 | 96.2% | 96.2% | (many diffs) |
8 | human | 285331 | CCDC66 | coiled-coil domain containi... | NM_001012506.5 | 96.2% | 96.2% | (many diffs) |
9 | human | 285331 | CCDC66 | coiled-coil domain containi... | NM_001353152.1 | 96.2% | 96.2% | (many diffs) |
10 | human | 285331 | CCDC66 | coiled-coil domain containi... | NM_001353153.1 | 96.2% | 96.2% | (many diffs) |
11 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_011533614.2 | 95.6% | 95.6% | (many diffs) |
12 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_011533615.2 | 95.6% | 95.6% | (many diffs) |
13 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_017006230.2 | 95.6% | 95.6% | (many diffs) |
14 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_011533616.3 | 95.6% | 95.6% | (many diffs) |
15 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_011533617.2 | 95.6% | 95.6% | (many diffs) |
16 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_024453462.1 | 95.6% | 95.6% | (many diffs) |
17 | human | 285331 | CCDC66 | coiled-coil domain containi... | NM_001353154.1 | 95.2% | 95.3% | (many diffs) |
18 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_024453463.1 | 94.8% | 94.8% | (many diffs) |
19 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_005265083.4 | 94.6% | 94.7% | (many diffs) |
20 | human | 285331 | CCDC66 | coiled-coil domain containi... | NM_001353155.1 | 94.5% | 94.6% | (many diffs) |
21 | human | 285331 | CCDC66 | coiled-coil domain containi... | NR_148370.1 | 90% | (many diffs) | |
22 | human | 285331 | CCDC66 | coiled-coil domain containi... | NR_024460.2 | 89.1% | (many diffs) | |
23 | human | 285331 | CCDC66 | coiled-coil domain containi... | NR_148369.1 | 88.9% | (many diffs) | |
24 | human | 285331 | CCDC66 | coiled-coil domain containi... | NR_148368.1 | 88.8% | (many diffs) | |
25 | human | 285331 | CCDC66 | coiled-coil domain containi... | NR_148377.1 | 88.2% | (many diffs) | |
26 | human | 285331 | CCDC66 | coiled-coil domain containi... | NR_148366.1 | 86.6% | (many diffs) | |
27 | human | 285331 | CCDC66 | coiled-coil domain containi... | NR_148367.1 | 86.5% | (many diffs) | |
28 | human | 285331 | CCDC66 | coiled-coil domain containi... | XR_001740115.2 | 86.5% | (many diffs) | |
29 | human | 285331 | CCDC66 | coiled-coil domain containi... | NR_148378.1 | 85.7% | (many diffs) | |
30 | human | 285331 | CCDC66 | coiled-coil domain containi... | NR_148375.1 | 85.6% | (many diffs) | |
31 | human | 285331 | CCDC66 | coiled-coil domain containi... | NR_148376.1 | 85.2% | (many diffs) | |
32 | human | 285331 | CCDC66 | coiled-coil domain containi... | NR_148371.1 | 84.5% | (many diffs) | |
33 | human | 285331 | CCDC66 | coiled-coil domain containi... | NR_148372.1 | 84.1% | (many diffs) | |
34 | human | 285331 | CCDC66 | coiled-coil domain containi... | NR_148374.1 | 83.7% | (many diffs) | |
35 | human | 285331 | CCDC66 | coiled-coil domain containi... | NR_148373.1 | 83.6% | (many diffs) | |
36 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_011533619.2 | 78.2% | 78.2% | (many diffs) |
37 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_024453464.1 | 78.2% | 78.2% | (many diffs) |
38 | human | 285331 | CCDC66 | coiled-coil domain containi... | XR_001740111.2 | 74.3% | (many diffs) | |
39 | human | 285331 | CCDC66 | coiled-coil domain containi... | NM_001353156.1 | 67.6% | 67% | (many diffs) |
40 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_024453468.1 | 67.6% | 67% | (many diffs) |
41 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_017006236.1 | 67.1% | 66.5% | (many diffs) |
42 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_017006237.2 | 67.1% | 66.5% | (many diffs) |
43 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_017006238.1 | 67.1% | 66.5% | (many diffs) |
44 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_017006239.1 | 67.1% | 66.5% | (many diffs) |
45 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_024453465.1 | 67.1% | 66.5% | (many diffs) |
46 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_024453466.1 | 67.1% | 66.5% | (many diffs) |
47 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_024453467.1 | 67.1% | 66.5% | (many diffs) |
48 | human | 285331 | CCDC66 | coiled-coil domain containi... | NM_001353158.1 | 63.1% | 62.6% | (many diffs) |
49 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_017006242.2 | 63.1% | 62.6% | (many diffs) |
50 | human | 285331 | CCDC66 | coiled-coil domain containi... | NM_001353160.1 | 61.5% | 61.4% | 0_1ins1092;56A>G;721_722insCTT |
51 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_017006243.2 | 61.5% | 61.4% | 0_1ins1092;56A>G;721_722insCTT |
52 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_024453469.1 | 61.1% | 61% | (many diffs) |
53 | human | 285331 | CCDC66 | coiled-coil domain containi... | XM_024453470.1 | 61.1% | 61% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2916
- ORF length:
- 2847
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gaacttggga gatggtttaa agcttgaaac tgaattactg gatggaaaaa 121 ccaagctaat attgtctcca tatgaacata aatcaaaaat ttctgtgaag atgggaaata 181 aggccaagat tgcaaaatgt cctttaagaa caaaaactgg gcacattcta aaatcaacac 241 aagatacttg tattgggagt gaaaaacttt tgcaaaagaa gccagttggt tcagaaacat 301 cacaggcaaa aggtgaaaaa aatggaatga ctttttcatc cactaaggat ttatgtaaac 361 aatgtataga taaagactgt cttcatatcc agaaagagat ttcacctgca actcctaata 421 tgcagaagac tagaaacacc gtaaatacat ctctagtagg taaacagaag cctcacaaaa 481 aacacatcac agctgaaaac atgaagagca gtttggtgtg tctaacacaa gaccaactac 541 aacagatttt gatgactgta aaccaaggaa atagatctct ttccctgact gagaatggaa 601 aggaggcaaa aagtcaatat agtctatatt taaacagtat ttctaatcag ccaaaggatg 661 agaacattat gggattattc aaaaaaactg aaatggtttc atctgtccca gctgaaaata 721 aatctgtctt aaatgaacat caggagacat ctaaacagtg tgagcaaaaa attgccatag 781 agaatgaatg gaaaccagct gatatattca gtactctggg ggaaagggaa tgtgatagaa 841 gttcgttgga agcaaaaaaa gcccagtgga ggaaagagct agatgaacag gttgctttaa 901 agaagaaaga aaaagaagtt tctgaaaaat ggaatgatcc ttggaaaaaa tctgaaagtg 961 ataaaataat atgggaaaaa catcaaattc ttgaccaatc tagggaaaca gtactgctgg 1021 agcacccttt cagtgctgtg aaacaagaac tgcagagaaa atggattgaa gagttgaata 1081 agcaaataga agatgaccgt caaagaaaaa tagaggaaaa aattatatat tcaaagggtg 1141 aggaacatga cagatgggca atgcactttg attcattaaa gagttatcct ggttctcaat 1201 ctcagctgtt ctctcggtca acacacaaac aacctgagta cttctgtgtc tctcctgaca 1261 ctcaggagct ggctgatgtc agcagtgttt gtacacctac aaccggaagc caggttgaac 1321 cttcagagga ggagcatata gcaaaaccta ttaaggatgt ggttatggca aacagtaaga 1381 aaacaaactt tctccgttct atgactgctc tcttggaccc agctcagatt gaggaacgag 1441 acagacgacg acaaaaacaa ttagagcatc agaaagccat cactgcccag gtagaagaga 1501 agcgcaggaa gaaacaactg gaggaagagc aaagaaagaa ggaagaacaa gaagaggagc 1561 ttcgcttagc acaggaacgt gaagagatgc agaaacagta tgaagaagac atacttaagc 1621 aaaaacaaaa ggaagaaatc atgactctca agacaaatga gctattccag acaatgcagc 1681 gagcacagga actggcacag agactaaaac aagaacaaag aatccgagaa ttggcgcaaa 1741 agggacatga cacttctaga ctgattaaaa atcttggtgt tgatacaata caaatggaat 1801 ataatgcatc taacatttca aattcaagac atgattctga tgaaatcagt ggtaaaatga 1861 atacatatat gaattctacg acttcttcta agaaggatac tggtgtgcaa acagatgact 1921 taaatatagg aatattcacc aatgcagaat cacattgtgg atcattaatg gagagggaca 1981 tcacaaattg ttcatctcct gagatttcgg cagaacttat tggacagttt agcaccaaga 2041 aaaacaagca agaactaact caggataaag gagccagctt agaaaaagaa aacaatcggt 2101 gtaatgacca gtgtaatcag ttcacaagaa tagagaaaca aacaaaacac atgaagaaat 2161 atcctaaaag gcctgattgg aatataaata agccacctaa aaggtatatt ccagcatcag 2221 aaaagtaccc taaacagctt caaaagcaga gagaagaaaa aaaagtaagg aggcagatgg 2281 aattgcttca tttggtagaa aaaaataatc ctgggcacct ctctcaaaac agaggcattt 2341 caccagaaat ttttcattca tctcatcaag aaacggagtc aaagttgagg tggcatctag 2401 tcaaaaagga agaagagcct ctgaatattc attcattcag caaggaaagg tctccatcat 2461 caccagttcc agtagtgaaa aacagaaccc aacaaactca aaatacatta catttaccac 2521 taaaaaacag tagctatgag agagagaatt tgatctcagg aagtaatcaa acagaattat 2581 catctgggat ttctgaatca tcccatttta ttccgtatgt tcgaacaaat gagatctatt 2641 accttgatcc cgatgcacca ttgtctgggc cttcaaccca ggaccctcag taccaaaatt 2701 cacaagactg tggccaaaaa cgacagctat ttgattctga ctgtgtcagg gatccacttc 2761 ttaatcctaa catggtgaaa aatagggatc gacagcaagc aatccttaag ggactttcag 2821 aactgagaca gggccttctc cagaagcaaa aggagttgga aagtagtctc ctgcctttag 2881 ctgaaaatca agaagagagt tttggttctt catttttgcc aactttcttg tacaaagtgg 2941 ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg 3001 ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta