Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13548
Subject:
NR_148373.1
Aligned Length:
3367
Identities:
2469
Gaps:
895

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AATTGGCGTAGCGCTTGCTGAGCGGCGGCGGCAACCGACGTACACAAGGGGCTTGAGCGTTCTGTGGAGAGAGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCGAGGTCAGGCCATGAACTTGGGAGATGGTTTAAAGCTTGAAACTGAATTACTGGATGGAAAAACCAAGCTAA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TATTGTCTCCATATGAACATAAATCAAAAATTTCTGTGAAGATGGGAAATAAGGCCAAGATTGCAAAATGTCCT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TTAAGAACAAAAACTGGGCACATTCTAAAATCAACACAAGATACTTGTATTGGGAGTGAAAAACTTTTGCAAAA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GAAGCCAGTTGGTTCAGAAACATCACAGGCAAAAGGTGAAAAAAATGGAATGACTTTTTCATCCACTAAGGATT  370

Query    1  --------------------------------------------------------------------ATGCAG  6
                                                                                ||||||
Sbjct  371  TATGTAAACAATGTATAGATAAAGACTGTCTTCATATCCAGAAAGAGATTTCACCTGCAACCCCTAATATGCAG  444

Query    7  AAGACTAGAAACACCGTAAATACATCTCTAGTAGGTAAACAGAAGCCTCACAAAAAACACATCACAGCTGAAAA  80
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AAGACTAGAAACACCGTAAATACATCTCTAGTAGGTAAACAGAAGCCTCACAAAAAACACATCACAGCTGAAAA  518

Query   81  CATGAAGAGCAGTTTGGTGTGTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATA  154
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CATGAAGAGCAGTTTGGTGTGTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATA  592

Query  155  GATCTCTTTCCCTGACTGAGAATGGAAAGGAGGCAAAAAGTCAATATAGTCTATATTTAAACAGTATTTCTAAT  228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GATCTCTTTCCCTGACTGAGAATGGAAAGGAGGCAAAAAGTCAATATAGTCTATATTTAAACAGTATTTCTAAT  666

Query  229  CAGCCAAAGGATGAGAACATTATGGGATTATTCAAAAAAACTGAAATGGTTTCATCTGTCCCAGCTGAAAATAA  302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CAGCCAAAGGATGAGAACATTATGGGATTATTCAAAAAAACTGAAATGGTTTCATCTGTCCCAGCTGAAAATAA  740

Query  303  ATCTGTCTTAAATGAACATCAGGAGACATCTAAACAGTGTGAGCAAAAAATTGCCATAGAGAATGAATGGAAAC  376
            ||||||||||||||||||||||||||||||||||||                     |||||||||||||||||
Sbjct  741  ATCTGTCTTAAATGAACATCAGGAGACATCTAAACA---------------------AGAGAATGAATGGAAAC  793

Query  377  CAGCTGATATATTCAGTACTCTGGGGGAAAGGGAATGTGATAGAAGTTCGTTGGAAGCAAAAAAAGCCCAGTGG  450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  794  CAGCTGATATATTCAGTACTCTGGGGGAAAGGGAATGTGATAGAAGTTCGTTGGAAGCAAAAAAAGCCCAGTGG  867

Query  451  AGGAAAGAGCTAGATGAACAGGTTGCTTTAAAGAAGAAAGAAAAAGAAGTTTCTGAAAAATGGAATGATCCTTG  524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  868  AGGAAAGAGCTAGATGAACAGGTTGCTTTAAAGAAGAAAGAAAAAGAAGTTTCTGAAAAATGGAATGATCCTTG  941

Query  525  GAAAAAATCTGAAAGTGATAAAATAATATGGGAAAAACATCAAATTCTTGACCAATCTAG--------------  584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
Sbjct  942  GAAAAAATCTGAAAGTGATAAAATAATATGGGAAAAACATCAAATTCTTGACCAATCTAGGCTCTTCAAGCATT  1015

Query  585  --------------------------------------------------------------------------  584
                                                                                      
Sbjct 1016  CTATCACAGTCTCGTAGCCAGGTTATGGTGGTCCAAGCTGATGGGGCATTCACAACTTAGAGCTAGTCAGACTT  1089

Query  585  ----GGAAACAGTACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAGAACTGCAGAGAAAATGGATTGAAGAG  654
                |||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 1090  TAGAGGAAACAGTACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAAATGGATTGAAGAG  1163

Query  655  TTGAATAAGCAAATAGAAGATGACCGTCAAAGAAAAATAGAGGAAAAAATTATATATTCAAAGGGTGAGGAACA  728
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164  TTGAATAAGCAAATAGAAGATGACCGTCAAAGAAAAATAGAGGAAAAAATTATATATTCAAAGGGTGAGGAACA  1237

Query  729  TGACAGATGGGCAATGCACTTTGATTCATTAAAGAGTTATCCTGGTTCTCAATCTCAGCTGTTCTCTCGGTCAA  802
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 1238  TGACAGATGGGCAATGCACTTTGATTCATTAAAGAGTTATCCTGGTTCTCAATCTCAGCTGTTCTCTCAGTCAA  1311

Query  803  CACACAAACAACCTGAGTACTTCTGTGTCTCTCCTGACACTCAGGAGCTGGCTGATGTCAGCAGTGTTTGTACA  876
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312  CACACAAACAACCTGAGTACTTCTGTGTCTCTCCTGACACTCAGGAGCTGGCTGATGTCAGCAGTGTTTGTACA  1385

Query  877  CCTACAACCGGAAGCCAGGTTGAACCTTCAGAGGAGGAGCATATAGCAAAACCTATTAAGGATGTGGTTATGGC  950
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386  CCTACAACCGGAAGCCAGGTTGAACCTTCAGAGGAGGAGCATATAGCAAAACCTATTAAGGATGTGGTTATGGC  1459

Query  951  AAACAGTAAGAAAACAAACTTTCTCCGTTCTATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACA  1024
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460  AAACAGTAAGAAAACAAACTTTCTCCGTTCTATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACA  1533

Query 1025  GACAACGACAAAAACAATTAGAGCAT------------------------------------------------  1050
            |||.||||||||||||||||||||||                                                
Sbjct 1534  GACGACGACAAAAACAATTAGAGCATCAGCTCTGTCACCTAGGCTGGACTTCAGTGGCACAATGTTGGATCACT  1607

Query 1051  ---------------------------------------------------------------CAGAAAGCCAT  1061
                                                                           |||||||||||
Sbjct 1608  ACAACCTCCACCTTCTGGGTTCAAGCAATTCCCATGCCTCAGCCACCCAAGTAGCTGGAATTACAGAAAGCCAT  1681

Query 1062  CACTGCCCAGGTAGAAGAGAAGCGCAGGAAGAAACAACTGGAGGAAGAGCAAAGAAAGAAGGAAGAACAAGAAG  1135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682  CACTGCCCAGGTAGAAGAGAAGCGCAGGAAGAAACAACTGGAGGAAGAGCAAAGAAAGAAGGAAGAACAAGAAG  1755

Query 1136  AGGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACAGTATGAAGAAGACATACTTAAGCAAAAACAA  1209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1756  AGGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACAGTATGAAGAAGACATACTTAAGCAAAAACAA  1829

Query 1210  AAGGAAGAAATCATGACTCTCAAGACAAATGAGCTATTCCAGACAATGCAGCGAGCACAGGAACTGGCACAGAG  1283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1830  AAGGAAGAAATCATGACTCTCAAGACAAATGAGCTATTCCAGACAATGCAGCGAGCACAGGAACTGGCACAGAG  1903

Query 1284  ACTAAAACAAGAACAAAGAATCCGAGAATTGGCGCAAAAGGGACATGACACTTCTAGACTGATTAAAAATCTTG  1357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1904  ACTAAAACAAGAACAAAGAATCCGAGAATTGGCGCAAAAGGGACATGACACTTCTAGACTGATTAAAAATCTTG  1977

Query 1358  GTGTTGATACAATACAAATGGAATATAATGCATCTAACATTTCAAATTCAAGACATGATTCTGATGAAATCAGT  1431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978  GTGTTGATACAATACAAATGGAATATAATGCATCTAACATTTCAAATTCAAGACATGATTCTGATGAAATCAGT  2051

Query 1432  GGTAAAATGAATACATATATGAATTCTACGACTTCTAAGAAGGATACTGGTGTGCAAACAGATGACTTAAATAT  1505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2052  GGTAAAATGAATACATATATGAATTCTACGACTTCTAAGAAGGATACTGGTGTGCAAACAGATGACTTAAATAT  2125

Query 1506  AGGAATATTCACCAATGCAGAATCACATTGTGGATCATTAATGGAGAGGGACATCACAAATTGTTCATCTCCTG  1579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2126  AGGAATATTCACCAATGCAGAATCACATTGTGGATCATTAATGGAGAGGGACATCACAAATTGTTCATCTCCTG  2199

Query 1580  AGATTTCGGCAGAACTTATTGGACAGTTTAGCACCAAGAAAAACAAGCAAGAACTAACTCAGGATAAAGGAGCC  1653
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2200  AGATTTCGGCAGAACTTATTGGACAGTTTAGCACCAAGAAAAACAAGCAAGAACTAACTCAGGATAAAGGAGCC  2273

Query 1654  AGCTTAGAAAAAGAAAACAATCGGTGTAATGACCAGTGTAATCAGTTCACAAGAATAGAGAAACAAACAAAACA  1727
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2274  AGCTTAGAAAAAGAAAACAATCGGTGTAATGACCAGTGTAATCAGTTCACAAGAATAGAGAAACAAACAAAACA  2347

Query 1728  CATGAAGAAATATCCTAAAAGGCCTGATTGGAATATAAATAAGCCACCTAAAAGGTATATTCCAGCATCAGAAA  1801
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2348  CATGAAGAAATATCCTAAAAGGCCTGATTGGAATATAAATAAGCCACCTAAAAGGTATATTCCAGCATCAGAAA  2421

Query 1802  AGTACCCTAAACAGCTTCAAAAGCAGAGAGAAGAAAAAAAAGTAAGGAGGCAGATGGAATTGCTTCATTTGGTA  1875
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2422  AGTACCCTAAACAGCTTCAAAAGCAGAGAGAAGAAAAAAAAGTAAGGAGGCAGATGGAATTGCTTCATTTGGTA  2495

Query 1876  GAAAAAAATAATCCTGGGCACCTCTCTCAAAACAGAGGCATTTCACCAGAAATTTTTCATTCATCTCATCAAGA  1949
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2496  GAAAAAAATAATCCTGGGCACCTCTCTCAAAACAGAGGCATTTCACCAGAAATTTTTCATTCATCTCATCAAGA  2569

Query 1950  AACGGAGTCAAAGTTGAGGTGGCATCTAGTCAAAAAGGAAGAAGAGCCTCTGAATATTCATTCATTCAGCAAGG  2023
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2570  AACGGAGTCAAAGTTGAGGTGGCATCTAGTCAAAAAGGAAGAAGAGCCTCTGAATATTCATTCATTCAGCAAGG  2643

Query 2024  AAAGGTCTCCATCATCACCAGTTCCAGTAGTGAAAAACAGAACCCAACAAACTCAAAATACATTACATTTACCA  2097
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2644  AAAGGTCTCCATCATCACCAGTTCCAGTAGTGAAAAACAGAACCCAACAAACTCAAAATACATTACATTTACCA  2717

Query 2098  CTAAAAAACAGTAGCTATGAGAGAGAGAATTTGATCTCAGGAAGTAATCAAACAGAATTATCATCTGGGATTTC  2171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2718  CTAAAAAACAGTAGCTATGAGAGAGAGAATTTGATCTCAGGAAGTAATCAAACAGAATTATCATCTGGGATTTC  2791

Query 2172  TGAATCATCCCATTTTATTCCGTATGTTCGAACAAATGAGATCTATTACCTTGATCCCGATGCACCATTGTCTG  2245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2792  TGAATCATCCCATTTTATTCCGTATGTTCGAACAAATGAGATCTATTACCTTGATCCCGATGCACCATTGTCTG  2865

Query 2246  GGCCTTCAACCCAGGACCCTCAGTACCAAAATTCACAAGACTGTGGCCAAAAACGACAGCTATTTGATTCTGAC  2319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2866  GGCCTTCAACCCAGGACCCTCAGTACCAAAATTCACAAGACTGTGGCCAAAAACGACAGCTATTTGATTCTGAC  2939

Query 2320  TGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAATAGGGATCGACAGCAAGCAATCCTTAAGGGACT  2393
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2940  TGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAATAGGGATCGACAGCAAGCAATCCTTAAGGGACT  3013

Query 2394  TTCAGAACTGAGACAGGGCCTTCTCCAGAAGCAAAAGGAGTTGGAAAGTAGTCTCCTGCCTTTAGCTGAAAATC  2467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3014  TTCAGAACTGAGACAGGGCCTTCTCCAGAAGCAAAAGGAGTTGGAAAGTAGTCTCCTGCCTTTAGCTGAAAATC  3087

Query 2468  AAGAAGAGAGTTTTGGTTCTTCATTT------------------------------------------------  2493
            ||||||||||||||||||||||||||                                                
Sbjct 3088  AAGAAGAGAGTTTTGGTTCTTCATTTTAAATGTAGAAAATCAAATCCTTCACATTTGATTTGTGTCTTCCAAAT  3161

Query 2494  --------------------------------------------------------------------------  2493
                                                                                      
Sbjct 3162  TATAAAATGTGCTCACTGGCTCAACTGTATTTTTCAAATAGCCTAGATTTACTTATTTTTTTAAATGCTCATTA  3235

Query 2494  --------------------------------------------------------------------------  2493
                                                                                      
Sbjct 3236  AAAACTTGTATACTATGTAGTAAAATGCTGTACTTGTTCTATACAATAAAACAGATACTTCTTTTGTAAAAGCT  3309

Query 2494  -------------------------------------  2493
                                                 
Sbjct 3310  TAGTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  3346

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.