Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13686
- Subject:
- XR_001747881.1
- Aligned Length:
- 3845
- Identities:
- 576
- Gaps:
- 3269
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTTAGCCTGTGGTGGGCGCTGCGGGTGTTTGCAGGAGGTTGCAGTACTCGCTGGGCTGAGGTCGTCTCGGGTGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGAGGTCGCGCCGGAAGTGGCTCTAGCCGTGGCGCTTCGGCGTAGTAAGGAGCCTGCAACAGAGTTTTGTTGTT 148
Query 1 --------------------------------------------ATGGCGAAAGGCAGAGTCGCCGAACGATCG 30
||||||||||||||||||||||||||||||
Sbjct 149 TAGGGGGCGCGGCACCGCACCGCTCCCTTCACCTTGCAGCAGCCATGGCGAAAGGCAGAGTCGCCGAACGATCG 222
Query 31 CAGTTGGGCGCTCACCACACGACCCCCGTGGGGGACGGGGCAGCGGGGACGCGGGGTCTCGCGGCGCCTGGCAG 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CAGTTGGGCGCTCACCACACGACCCCCGTGGGGGACGGGGCAGCGGGGACGCGGGGTCTCGCGGCGCCTGGCAG 296
Query 105 CAGAGACCACCAGAAGGAAAAATCCTGGGTAGAAGCTGGATCAGCAAGAATGTCACTCCTTATATTGGTGTCCA 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CAGAGACCACCAGAAGGAAAAATCCTGGGTAGAAGCTGGATCAGCAAGAATGTCACTCCTTATATTGGTGTCCA 370
Query 179 TTTTCTTATCTGCAGCTTTTGTTATGTTTTTGGTATATAAAAATTTTCCTCAGCTTAGTGAAGAAGAAAGAGTG 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TTTTCTTATCTGCAGCTTTTGTTATGTTTTTGGTATATAAAAATTTTCCTCAGCTTAGTGAAGAAGAAAGAGTG 444
Query 253 AATATGAAGGTTCCCAGAGATATGGATGATGCCAAGGCTCTAGGAAAAGTTTTATCCAAATACAAGGACACCTT 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AATATGAAGGTTCCCAGAGATATGGATGATGCCAAGGCTCTAGGAAAAGTTTTATCCAAATACAAGGACACCTT 518
Query 327 TTATGTTCAAGTACTTGTAGCTTATTTTGCTACATATATTTTTTACCAGCTTGCAAACATTTGCTATTCCAGGC 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TTATGTTCAAGTACTTGTAGCTTATTTTGCTACATATATTTTTTACCAGCTTGCAAACATTTGCTATTCCAGGC 592
Query 401 TCTATATTTCTCAGTATACTCTCAGGGTTTCTTTATCCCTTTCCACTAGCCTTATTTCTTGTTTGTTTGTGTTC 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TCTATATTTCTCAGTATACTCTCAGGGTTTCTTTATCCCTTTCCACTAGCCTTATTTCTTGTTTGTTTGTGTTC 666
Query 475 TGGACTTGGTGCCTCTTTCTGTTATATGCTTTCCTATTTAGTTGGGAGACCAGTTGTATACAAATACCTAACAG 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TGGACTTGGTGCCTCTTTCTGTTATATGCTTTCCTATTTAGTTGGGAGACCAGTTGTATACAAATACCTAACAG 740
Query 549 AGAAAGCAGTAAAATGGTCACAGCAGGT---------------------------------------------- 576
||||||||||||||||||||||||||||
Sbjct 741 AGAAAGCAGTAAAATGGTCACAGCAGGTTGAACGTCATAGAGAACATCTCATTAACTACATTATATTTTTGAGA 814
Query 577 -------------------------------------------------------------------------- 576
Sbjct 815 ATAACACCATTTCTGCCTAATTGGTTTATTAATATCACATCTCCTGTGATAAACGTGCCATTGAAAGTTTTTTT 888
Query 577 -------------------------------------------------------------------------- 576
Sbjct 889 TATTGGTACTTTTCTAGGTGTCGCACCTCCTTCTTTTGTAGCCATTAAGGCAGGAACAACACTGTATCAACTTA 962
Query 577 -------------------------------------------------------------------------- 576
Sbjct 963 CAACAGCAGGAGAAGCTGTTTCCTGGAACTCAATATTTATTCTGATGATCTTGGCTGTTCTTTCTATTCTGCCA 1036
Query 577 -------------------------------------------------------------------------- 576
Sbjct 1037 GCCATCTTCCAAAAAAAACTAAAGCAGAAATTTGAGTAAAAATAATCATCTGATTTTTAGTTTTGCTGTCATCA 1110
Query 577 -------------------------------------------------------------------------- 576
Sbjct 1111 CCATCTCAGGATTAACAGGTGCATCCATTTATGTTTTAAAATCACCTCTTCAGTAATTAAACAAGGAATTTGTA 1184
Query 577 -------------------------------------------------------------------------- 576
Sbjct 1185 AAATAAAATTTCCTATCAGATAGTTAAAGTAATACATTTAAGTGACAAGGGGAGAAGAAAGTAAAAATGGAAAT 1258
Query 577 -------------------------------------------------------------------------- 576
Sbjct 1259 TGGTATACTGTGAAAAGTGCTATCAATAGTTAAGGTAGACATCTTAGACATCTTATAAATTATTATACCAAGGG 1332
Query 577 -------------------------------------------------------------------------- 576
Sbjct 1333 TAGCTGTAGATAATAGTAGTGTGGTAGGAAATTGTTGATCCAGCTAATTCATTCAATTTAATTGAATATTTTTT 1406
Query 577 -------------------------------------------------------------------------- 576
Sbjct 1407 ATCTTTAATAACTAAAATAGATATTTTTAAATTCTAGATTTTTTAAAGTAGTGTTGCAGGTTTTGTTAATGTTA 1480
Query 577 -------------------------------------------------------------------------- 576
Sbjct 1481 GGCTTTTTTCAGAGCATAAACTGGAAAACTTAAAAAGAGATTTACATTTTCTTCCTCTTTTTTTTTTTTTTTTT 1554
Query 577 -------------------------------------------------------------------------- 576
Sbjct 1555 TTTTCTGTTTTGAGACGGAGTCTAGCTCTGCCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCCACTCACTGCAA 1628
Query 577 -------------------------------------------------------------------------- 576
Sbjct 1629 GCTCCACCTCCTGGGTTCACGCCATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCGCCACC 1702
Query 577 -------------------------------------------------------------------------- 576
Sbjct 1703 ATGCCCAGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCC 1776
Query 577 -------------------------------------------------------------------------- 576
Sbjct 1777 TGACCTCGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCCCAT 1850
Query 577 -------------------------------------------------------------------------- 576
Sbjct 1851 TTTCTTCCTCTTTTGAGGTAATGGATTTGTTTGGAGATGGCATGTTAGTAGACGACTGAATATGGAAAGGATAT 1924
Query 577 -------------------------------------------------------------------------- 576
Sbjct 1925 CAAGTTATCTATTTTGTTAATTTTATTTTTGTTTTTTATCATCTAGATTTTTATCATGGATTAGTCTGAAATTT 1998
Query 577 -------------------------------------------------------------------------- 576
Sbjct 1999 AAAGTTCTGGCCAGTCGGTTTTCTTTCATCTTGTAGTTTTTACAGTATTTCCACTGTGCATATGCAAAATGGGT 2072
Query 577 -------------------------------------------------------------------------- 576
Sbjct 2073 ATTACATAACTGTATCATATTTGGTATTGATAATTTTTTTTTTTTTTGAGACGGAGTCTTGCTGTTGCCCAGGC 2146
Query 577 -------------------------------------------------------------------------- 576
Sbjct 2147 TGGAGTGGAGTGCGTGGTGTGATCTCGGCTCACTGCAAACTCCGCCTCCTGGGTTCAAGCGATTCTCCTGGCCC 2220
Query 577 -------------------------------------------------------------------------- 576
Sbjct 2221 AGCCTCCTGAGTAGCTGGGATTACAGGTGTGTGCCACCGTGCCCAGCTAATTTTTGTGTTTTTAGTAGAGACGG 2294
Query 577 -------------------------------------------------------------------------- 576
Sbjct 2295 GGTTTCACCATGTTGGCCGGGCTGGTCTTGAACTCCTGACCTCAGGCTATATGCCCACTTCCACCTCCCAAAGT 2368
Query 577 -------------------------------------------------------------------------- 576
Sbjct 2369 GCTGGGATTACAGGCATGAGCCACTGTGCCCAGCCTGGTATTGATAATTTATATTCAGATAATTTGTTATGGCT 2442
Query 577 -------------------------------------------------------------------------- 576
Sbjct 2443 CTTTAATATCCCACAAGGGGCTCTAAAAAGCAAACATTCAAGAGTATGTAGTTTTTAGACATTAAGTTAATTAT 2516
Query 577 -------------------------------------------------------------------------- 576
Sbjct 2517 TTTAAACAGTGACAGCAAAACACAAGTGATTAAATATAGTTTATTTGTTCCAATGACTAAATTTTACCTCATTT 2590
Query 577 -------------------------------------------------------------------------- 576
Sbjct 2591 ATTAATCTGGTCATTAAGGAATATATTTAATAATATTATGTAATTATTCTTTTTATGCATGATACACCTAGAAA 2664
Query 577 -------------------------------------------------------------------------- 576
Sbjct 2665 AATGCCTTTTGTTTCTATTGATGGCTTTGTTGTTTGGAGCTACTTTTGATTACTTATTGCAGTTTCCCAATTTA 2738
Query 577 -------------------------------------------------------------------------- 576
Sbjct 2739 GTCTTTACTTTATCTAACTCACAAAGTAAAATTAACTGATCACATGGCAACTACTGTATTTAAATAGTTCTGGA 2812
Query 577 -------------------------------------------------------------------------- 576
Sbjct 2813 AAAATGAAAGTGCTTTTTGCTGCTTGGTAAATGGGTAATGCCCTTGATTCCTTGACTGTAGGACATAGCTGATC 2886
Query 577 -------------------------------------------------------------------------- 576
Sbjct 2887 TAAAGTACTCTGTCAGTTTTACCTTCACCCATGACTGTTATTAGTTGTCAAAGTTGAAAAGTACTTTAGCTGTG 2960
Query 577 -------------------------------------------------------------------------- 576
Sbjct 2961 AGAAATCCTTGTATGTTTTTATTATAAGAGGTATAATCATCCTCAAAGCCTGTTTTTATTACATGATGTGGACT 3034
Query 577 -------------------------------------------------------------------------- 576
Sbjct 3035 GATTATTTTTTCTATCACAGTGTTAACAGATGGATTTTATTGTAAATACAAAGAAAACATATTGATTATTGTAG 3108
Query 577 -------------------------------------------------------------------------- 576
Sbjct 3109 TATTCTTATGTCACCTGGCCTTTTGCGTGAGATTATTTATTATTTCTAGCAAGGCTTTCTTCCTTTCTTATTGC 3182
Query 577 -------------------------------------------------------------------------- 576
Sbjct 3183 CCAGAGACTGACTGATACATCTTTTGTTATTTTTACACATAAATTAAACATAGCCTTTTTGGACAAATTCACTA 3256
Query 577 -------------------------------------------------------------------------- 576
Sbjct 3257 AATATTAATGTATAAAATGTAATTGAGTAAATTTTTATCAGAATTTTAAAAATAAAAGAGCTTAGACTCAGTAG 3330
Query 577 -------------------------------------------------------------------------- 576
Sbjct 3331 AACTCAGTAGAAGCTTCACTATTTACTCCAGCGTGTGTAAATTGTACTTACTCTATTCTCAGAGTATATTTACT 3404
Query 577 -------------------------------------------------------------------------- 576
Sbjct 3405 GTCCTTACCATTGATTCTTTCCCTTTGCTAATTTTTTTTTTTGTTAATGGTAGCTGCGACTTTAGGTGGGGTAT 3478
Query 577 -------------------------------------------------------------------------- 576
Sbjct 3479 ATTTTCTTCTCCTAAGAGAATAGACAGTTTTTCCAGATTCATCATCATTGACTGTCAAGAAAGGACCCTTCAGC 3552
Query 577 -------------------------------------------------------------------------- 576
Sbjct 3553 AAGGCTGTACCCTCAATGCAGTTGATGGCCTGTCTTCACGGATTTACAGACTTGGCCTGATGCCCATGTAAATT 3626
Query 577 -------------------------------------------------------------------------- 576
Sbjct 3627 CAAGCTTTGGCTTGTGGTAACAACCACAAGAAGACAAGCATCTGTGGTGCGGAGGCAAGCAGGCTAACTAGGAG 3700
Query 577 -------------------------------------------------------------------------- 576
Sbjct 3701 TTGACAAGCTAAGAAAGTGAAACTGTTCTTTCTTAGTTAACTGTCTTTCTCTGGAGCTCTGTTATTTTGAGTAT 3774
Query 577 ----------------------------------------------------------------------- 576
Sbjct 3775 AATATTTCCATGACACTTAGTAAATGCAAGCTAAAATGTAATAATAATAAATTGTATTGGAGAAACCTAAA 3845
