Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13729
Subject:
NR_003572.2
Aligned Length:
5812
Identities:
210
Gaps:
5570

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AAAGGCGGGGCCGGGCCGGGGCGGGGTCTCGGGCAGGGGCGGGGAGCTTACCGACCTCCCGCCCCCGCTGCGCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGTTTCTGGCCCTGCCAGTGTCTCCGCCGGTTGAAAGCGCGTGTCTGCGTCGGGTTCTGTTGGAGTGCGTTCGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TGTGCCGTGGGTCCGCGCTGCTTCCACCCAACTTCCTGTTAGAGTTTCTCTCCTGTCACAATGGCATGGTCTCG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCTCACTGCGACCTCTGCTTCCTGGGTTCAAGGATTCTCCTGCCTCAGTCTCCCAAGTAGCTGGGATTACAGGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCCACCCGAGGACGGGTCACCATGGCTTTGGAGCACCTGGTAGTGTGGCATGTCCACAGTGAAGACCAGAGTTT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CGTTGTCCTTAAGACTGACCTGGGGAGACGTGGCTGCAGGCCATTGAGGAAGACGGCACCGAAAGCGAAGGAAG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTCCTGCTCCTCCTAAAGCCGAAGCCAAAGTGAAGGCTTTAAAGGCCAAGAAGGCAGTGTTGAAAGGTGTCCGC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AGCCACACGCAAAAAAGAAGATCCGCATGTCACTCACCTTCAGGCGGCCCAAGACACTGCGACTTCGGAGGCAG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCCAGATATCCTCGGAAGAGCACCCCCAGGAGAAACAAGCTTGGCCACTATGCTATCAAGTTTCCGCTGACCAC  666

Query    1  ---------ATGAAGAAGACAGAAGACAACAACGCACTTGTGTTCACTGTGAATGTTAAAGCCAACAAGCACCA  65
                     ..||||||||.||||||.|.||||...|||||||||...|||.||||||||||||||||||||||
Sbjct  667  TGAGTGGGCCGGAAGAAGATAGAAGAAAGCAACATGCTTGTGTTCTTCGTGGATGTTAAAGCCAACAAGCACCA  740

Query   66  ---------------GAAGAAGCTCTATGACACTGATGTGGCCAAGGTCAACACCCTGATTCGGCCTGATGGAG  124
                           |||||||.|||||||||.|||||||||||||||||.||||||||||...||||||..||
Sbjct  741  GATCAGACAGGCTGTGAAGAAGGTCTATGACAGTGATGTGGCCAAGGTCACCACCCTGATTTTTCCTGATAAAG  814

Query  125  AGAAGGA-----ACATGTTCGACTGGCTCCTGATTACAATGCTTTGGATGTTGCCAACAAAATAGGGATCATCT  193
            ||||..|     |.||||||||||||||||||||||..|.||||||||||||| |||||||||.||||||||||
Sbjct  815  AGAACAAGGCATATATGTTCGACTGGCTCCTGATTATGAAGCTTTGGATGTTG-CAACAAAATTGGGATCATCT  887

Query  194  CAACTGAGTCCAGTTGGCTAATTCTAAATATATGTATATCTTTTCACCAT------------------------  243
            .||||||||||||.|||||||.||||||||.||||.||||||||||||||                        
Sbjct  888  AAACTGAGTCCAGCTGGCTAACTCTAAATACATGTGTATCTTTTCACCATAAAAGAATAATGTTTTTCATAAGA  961

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct  962  GTGACAACTTAATTAGAATCAAATCTATAAGCTTTAAGATTTTACATTTCTGTAAGTATAATATTAGCTTATTT  1035

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 1036  GACTAGAACTCAAGCAGAATAGGAATTTATGTTTGTTTTATATTCAAGTGATAACTTTGAAGACATAGTTTTAT  1109

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 1110  TACACCAAAAATTTTATATTAATCTCATTTAAGTAAGTTTTATCCAAATCATGTTAACTTAAAAAACATTTGAT  1183

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 1184  CAGTTCCTATATTTCTAGGAGTTTGGTGAATATTTATTTATAAATGGTTATTTTTTTCCAAGCCAAGTTAGAAT  1257

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 1258  AGAGCACTTTTATAGGATTTTATAAATGAATTTTGCAGTGCTATCCGGAGTTAAGAAAATATCACATATACATT  1331

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 1332  ACATACAGTAATAGATATACAAACACAAATAGAGATTTCATAGCTTTCATCCTGAAATTTCAGCCATGAATCAG  1405

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 1406  GCATAAATATTCTGATGGTTAATTTTAGACATCTACTTGATTGGATTAAGAAACATACATAGCTGGTCAAACAA  1479

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 1480  TTTCAGCCATGAAACAGGCATAAATATTCTGATGGTTAATTTTAGACATCTACTTGACTGGATTGAGAGACACA  1553

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 1554  CGTAGCTGGTGAAACACAATTTCTGGGCATATCTGTGAAGGTGTTTCTGGAAGACACTGAGATAACCCTGACCC  1627

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 1628  AGTGTGGATGGGCACTGATATGGTTTGCCTGTGTCCCCACCCAGATCTCATCTTGAATTGTAGTTCCTATAATC  1701

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 1702  CGTACATGTCGTGGGAGGGACCCAGTGGGAGGTGATTGAATCATGGTGGTTGTTACTGCCATTCTGTTTTCATG  1775

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 1776  GCAGTGAGTGAGTTCTCATGATCCAATGGTTTCATAAGGGGCTGTTCCCCTTTGGCTCAGCACTTCTTCTTGTT  1849

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 1850  GCTGCCATGTGAAGAAGGACGTCTTTGTTTCCCCTTCTGCCATGATTGTGAGGCCTCTGCAGCCACGTGGAACT  1923

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 1924  GTCAGCCCATTTAACCTCTTTGTTCTTTATAAATTGCTCAGACTCAGGTATTTCTTCACAGCTGTATAAAAATG  1997

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 1998  GATGAATACAGGCACCATCCAATTGGTTGAGAGCCCAGATAGAATAACAAGGAAGAGGAAAGGTGAATTATCTC  2071

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 2072  CTGAAATTGAAACATCCTTCTTCTCCTGCCCTTGACATCAGAATCAGTGTCTCAGAGCTTTGGCCTCAGAATCA  2145

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 2146  GAGTTACACCATTGGCTTCCCTGATTCTGAGTCCTTTATATCTGGAGTGAGTCATGCTGCCAGCTTTCCTGGTT  2219

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 2220  CTCCAACTTGGAGACAGGCTATTGTGTAACTTCTCAGCCTCCATAATTATGTGAACCAATTCCCCTAATGAGTC  2293

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 2294  TTCTCTCATCTATCTACATATATCCTATTGATTCTGCCTTTCTGGAGAACCCTGACTAATGTTATTACAATAAT  2367

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 2368  ACAAAATTCACTAGTTTATATAGAAGACTTGGTTTTTGTCTTTGCCCCATTTTGTATTTGTATTATAACTGTGT  2441

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 2442  ATCTGGAAAATGGAACAAGTTTTTATCTTCTTCATATGAGGGCCAAAGCTTTTTTCTCACCAATATTTTTGGAG  2515

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 2516  ATTTTTAAGATTTTCTTTTGTTTGGACATACAATCTTATGGAGGCTGAGAAATAAAATTTTTTCTATTTTATTT  2589

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 2590  TTCAGCCCCAGATGTTTGCTTTTGCAGATTCTTGAGCACATTGAGAGCATGGAGAGCACTCCAAGGCATGGAGT  2663

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 2664  GGGGTGCCTAAAGTTTCAGTGATTACAGGGAGTTGAGAGACTCAACTGGGAAAGGAAAAGTCTAAAAGGAGGCA  2737

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 2738  ATTTGGAAGATAAAAATTTTCTCAAAGGAGCGATTAAATTTCTAAATAATTCTTAGTAAAATCATGTAAACAGG  2811

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 2812  AAAGGAAATAGAATTAGTTCCATATTGGTGGAACACATAGCAGAGGTTTGAGAAGGGAGAATTTAGTCAACTGA  2885

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 2886  GAAGTTCTCATGAAAGGAGCAAGTTCAAGATCACAGAGACACCTTGAAACAAAAAGCCAGGAATAACTTCCAAC  2959

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 2960  CCAAGAGGAGAACAGAGAGGCCTCAAAACCAAAGCTAGGATAAGAAACTTGTAGCCCAAGAGTTATCTTCCAGA  3033

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 3034  CAAAGAAGCCTGAGATTCCAACGCAGCTTCAGAGAGTGCTCACTCAAAATGTTACTGAAACTGAAGGCTTTTTA  3107

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 3108  ATGACTTAGCCATGCCTGCAAAAGGCATTCCCTAAGGTGGCACAGAAGACGGAGCCCCCATATCCAAAGATAGC  3181

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 3182  CAAGGAGAAAGAAAGACCCCTGTTGCCAGAGCCAGTGGGCAAAGGCAACAGAAAAGGAGACAAGGGTCCTAATG  3255

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 3256  GGATGAGATCCTTTCGGATTTAGGCTTTTATACAAACTCCTGAGAACTGGCGGGTTGACAGCCATAAATGGGGT  3329

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 3330  ACCAAACTTTCTACTCATTGGATTACAAGTTCTCAGGCATCCAGAATGATGAACAAAATGACAATTTCTAGGGC  3403

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 3404  TTCTGTGGGAGAGTATGGAAAGGTCTTTTTGAACCTTTTAATGCTGTCAACGGAAGAATGATGAGGTTCATAAA  3477

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 3478  TTTGGAAAGGAGACATTTCTTCATTTTTATGTTTATTTTTATTTTTTTTGAGACAGAGTTTCACTCTTGTTGCC  3551

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 3552  CAGGCTGGAGTGCAATGGCGTGATCTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCT  3625

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 3626  CAGCCTCCTGATTAGCTGGGATTACAGATGCCCACCACCACACCTGGCTAATTTTTTGCAGTTTTAGTAGAGAC  3699

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 3700  AGGGTTTCATCATGTTGGCCAGGCTGGTCTGAAACTCATGAGCTCAGGTGATCCACTTGCCTTAGCCTCCCAAA  3773

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 3774  GTGCTGGGATTGCAGGCATGAGCCACCCAACCAGTGAGAGATTTATTTCCTATAAAGGGTTGTAGCCTGCAGGG  3847

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 3848  TTGTCCTTCTGACAGGCTGGGAAGCATAGCCTCCAGCCAGAAGCCAGAAACAGACTCTTCAAGGAGGAGGTAAA  3921

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 3922  GGAAATAGCAATTTATGCTGACTGGAATGGCCAAATACATTTATTTAATAAGCTCCAGGAGGAGTCATGAATAT  3995

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 3996  TTATGGAAGGAGAAATGCATGCATGCACAATTGAGTTTCTGGCTTCTTCATGGGTCCCATGTACAAAAAATGGC  4069

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 4070  AGTGTTAGCATGATCCCAGGGTGGAGTTTTCAGCCCTCTGACATTAAAAGGTGAAGCAGAGGACATGAAAACTC  4143

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 4144  GCTCTGTGCATCCTCTGTACGCTGGCCAGAACCTCTCTGTTGTGGGTGGTCTCTTATCAGGCAAGAAAGGAGAG  4217

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 4218  GTTGATATCGGTAGTGGAGGCTTTGAAAGGGCTGGTTTCTGTTAAATCCTTAGGGAAGAAAGCCTCATCATGGT  4291

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 4292  TAGCAAAGGAGTGGGTTTAACGATGTGTATGTTAACCCCATCATCCCATCCTAGCAAAGCTGAGAACTCAGTTT  4365

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 4366  TGAAAGTTACTCTGTGGTCCCCTCAGCCAAGAGTGGTTCTGTTCAGTCAGTTGGGAGCTTATAATTTAATTTTT  4439

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 4440  GTTTATCAATGCTAATGCGAAAGAGTACGCTGTCTTCATGGCAGCTGAATTTGCAAGAAACTCCTTGGATGGGG  4513

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 4514  TTAATGGCAGCTGTATTTTTCTGGGAGCTCTGCTTTAATTGGACAAAGTAAGTTGTGGTAAGATTTCTTCTTTT  4587

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 4588  ATCTTCAGTATCTCAAATGTTTTCATTTAAATAATCTTTATAACAACTTTTGATGTCTGAGTGGATTCCCATAC  4661

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 4662  AGTCATCTATTGTAAGACTTTCTGATTCCGTTTTTTTCCTTTGGTCATTATGAATAGGGCTTATGTAAATAATT  4735

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 4736  GCATGGTAGCTTTTGATTGGAAATAACATCAAAGTAGTTGTCAAAATACTTAGGAATGTTATTTTTGGATTGTA  4809

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 4810  AGGTGAGACTTGTTTAGCTTTGGAAAAAAATGCCCAACTTGTAATAGGGGAGGAAAAATAATTTTCTGTTTTCG  4883

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 4884  GAATTCTTAGATGGGATGCTCTGTAAAAACTGACAGATTAAAATGAGAAAAACAGAAAAGTTGAAAAACACGTA  4957

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 4958  TACCTTATGGTTACATGGGAGATATTCAGGGAAAAATGAGTAAATCTCCAACAGGTGGCTTTCAATTCAAGCAT  5031

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 5032  AAATACTGTCTTCAACTTAAAGAAAGAAGATTTGAGGTGCAGTATTGGGGAGTTAACCAGCAAAAGCACATTAG  5105

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 5106  ACAAGGGTAAGGTTCATTATACAGACTTAAGTCCATGCATTCTCCATTGATAAGACTCTTTAGTGATTTAGTTA  5179

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 5180  TCCTTCTCTTCTTGGTGTCGAGAGAGGTAGCTTTTAAATGGTGATTTCCTTTATAGATGTAAATTTTCCTTACA  5253

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 5254  CAAGTGTAACTTCTCTGTTTTCACAACTTCCTTTGTTAGCATTTTTTTTTTTCAAAATAATTAGCTTGGAATAA  5327

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 5328  TTCTTAAGCCAAAGGGACATATTTTGGGGTTGCATATTCTGGTTTCCTACCATTATATTTTGGGGTGGCATATT  5401

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 5402  TTGGTCTTATACACTGTGTTCCACCGGCAATGAAAAGAGTTCTTGTTTTTCCTCCAGCAATTTGTCATTTGTTA  5475

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 5476  AAGAGTTTAGCAGTTCTAAGAGATATAGACCAGCTGTGCTATCTTTTTGTGGTTTTCAGTTCTCTAGTATGTTG  5549

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 5550  AGCATCTTTTTGTAAGTGTACTTGCCATCTGTAGATCTTCTTTGGTGAGGCGTCTGTTCAGATCTGTGTGCATT  5623

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 5624  TTTAATTGGGCTGTTTAACTTATTGTTTAGTTTTAACAATTTTTTATGTATTTTGAATACAAATTCTCAGATCT  5697

Query  244  --------------------------------------------------------------------------  243
                                                                                      
Sbjct 5698  GTATTTTGCAAATATTTTCTTCAATATGTGGCTTGTCTTTTGGTTCTCTTAACAAGGTCTCTTCCAGAGTATAA  5771

Query  244  ----------------------------------------  243
                                                    
Sbjct 5772  ACTGTAAATATTAAGAAAAAAAAAAAAAAAAAAAAAAAAA  5811

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