Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13781
- Subject:
- NR_028456.2
- Aligned Length:
- 6687
- Identities:
- 245
- Gaps:
- 6405
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGGGGGCCGTTGGCTCCAGACAAATAAACATGGAGTCCATCTTCCACGAGAAACAGCCTTCTGGAAATATGGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGACAGTGGTTTTTTCTCTATTCAGAAATGAAAGATCATTTATATGCAATTATAAGGAACACTGGTTTACAGTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGAAAATTAGGAAAACAGTGGTTTAACTTGAATTCTCTCTTGACGGGTCCAGAATTAATATCAGATACATATCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGCACTTTTCTTGGCTCAATTACAACAGGAAGGTTATTCTATATTTGTCGTTAAGGGTGATCTGCCAGATTGCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAGCTGACCAACTCCTGCAGATGATTAGGGTCCAACAGATGCATCGACCAAAACTTATTGGAGAAGAATTAGCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CAACTAAAAGAGCAAAGAGTCCATAAAACAGACCTGGAACGAGTGTTAGAAGCAAATGATGGCTCAGGAATGTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGACGAAGATGAGGAGGATTTGCAGAGGGCTCTGGCACTAAGTCGCCAAGAAATTGACATGGAAGATGAGGAAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CAGATCTCCGCAGGGCTATTCAGCTAAGTATGCAAGGTAGTTCCAGAAACATATCTCAAGATATGACACAGACA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TCAGGTACAAATCTTACTTCAGAAGAGCTTCGGAAGAGACGAGAAGCCTACTTTGAAAATCACAACTCAGAAGT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGATGAAGGAAAATTCTGATCAGCTGACATCCTCTTAATACAGCAGCAAAAGCAGCAACAGCAGCAGCAGCAGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGCAGCAGGGGGACCTATCAGGACAGAGTTCACATCCATGTGAAAGGCCAGCCACCAGTTCAGGAGCACTTGGG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGTGATCTAGGTGATGCTATGAGTGAAGAAGACATGCTTCAGGCAGCTGTGACCATGTCTTTAGAAACTGTCAG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AAATGATTTGAAAACAGAAGGAAAAAAATAATACCTTTAAAAAATAATTTAGATATTCATACTTTCCAACATTA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCCTGTGTGATTACAGCATAGGGTCCACTTTGGTAATGTGTCAAAGAGATGAGGAAATAAGACTTTTAGCGGTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGCAAACAAAATGATGGGAAAGTGGAACAATGCGTCGGTTGTAGGACTAAATAATGATCTTCCAAATATTAGCC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AAAGAGGCATTCAGCAATTAAAGACATTTAAAATAGTTTTCTAAATGTTTCTTTTTCTTTTTTGAGTGTGCAAT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ATGTAACATGTCTAAAGTTAGGGCATTTTTCTTGGATCTTTTTGCAGACTAGCTAATTAGCTCTCGCCTCAGGC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTTTTCCATATAGTTTGTTTTCTTTTTCTGTCTTGTAGGTAAGTTGGCTCACATCATGTAATAGTGGCTTTCAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTCTTATTAACCAAATTAACCTTTCAGGAAAGTATCTCTACTTTCCTGATGTTGATAATAGTAATGGTTCTAGA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGGATGAACAGTTCTCCCTTCAACTGTATACCGTGTGCTCCAGTGTTTTCTTGTGTTGTTTTCTCTGATCACAA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CTTTTCTGCTACCTGGTTTTCATTATTTTCCCACAATTCTTTTGAAAGATGGTAATCTTTTCTGAGGTTTAGCG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTTTAAGCCCTACGATGGGATCATTATTTCATGACTGGTGCGTTCCTAAACTCTGAAATCAGCCTTGCACAAGT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ACTTGAGAATAAATGAGCATTTTTTAAAATGTGTGAGCATGTGCTTTCCCAGATGCTTTATGAATGTCTTTTCA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CTTATATCAAAACCTTACAGCTTTGTTGCAACCCCTTCTTCCTGCGCCTTATTTTTTCCTTTCTTCTCCAATTG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AGAAAACTAGGAGAAGCATAGTATGCAGGCAAGTCTCCTTCTGTTAGAAGACTAAACATACGTACCCACCATGA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ATGTATGATACATGAAATTTGGCCTTCAATTTTAATAGCAGTTTTATTTTATTTTTTCTCCTATGACTGGAGCT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TTGTGTTCTCTTTACAGTTGAGTCATGGAATGTAGGTGTCTGCTTCACATCTTTTAGTAGGTATAGCTTGTCAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AGATGGTGATCTGGAACATGAAAATAATTTACTAATGAAAATATGTTTAAATTTATACTGTGATTTGACACTTG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CATCATGTTTAGATAGCTTAAGAACAATGGAAGTCACAGTACTTAGTGGATCTATAAATAAGAAAGTCCATAGT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TTTGATAAATATTCTCTTTAATTGAGATGTACAGAGAGTTTCTTGCTGGGTCAATAGGATAGTATCATTTTGGT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GAAAACCATGTCTCTGAAATTGATGTTTTAGTTTCAGTGTTCCCTATCCCTCATTCTCCATCTCCTTTTGAAGC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TCTTTTGAATGTTGAATTGTTCATAAGCTAAAATCCAAGAAATTTCAGCTGACAACTTCGAAAATTATAATATG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GTATATTGCCCTCCTGGTGTGTGGCTGCACACATTTTATCAGGGAAAGTTTTTTGATCTAGGATTTATTGCTAA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CTAACTGAAAAGAGAAGAAAAAATATCTTTTATTTATGATTATAAAATAGCTTTTTCTTCGATATAACAGATTT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TTTAAGTCATTATTTTGTGCCAATCAGTTTTCTGAAGTTTCCCTTACACAAAAGGATAGCTTTATTTTAAAATC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TAAAGTTTCTTTTAATAGTTAAAAATGTTTCAGAAGAATTATAAAACTTTAAAACTGCAAGGGATGTTGGAGTT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TAGTACTACTCCCTCAAGATTTAAAAAGCTAAATATTTTAAGACTGAACATTTATGTTAATTATTACCAGTGTG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TTTGTCATATTTTCCATGGATATTTGTTCATTACCTTTTTCCATTGAAAAGTTACATTAAACTTTTCATACACT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TGAATTGATGAGCTACCTAATATAAAAATGAGAAAACCAATATGCATTTTAAAGTTTTAACTTTAGAGTTTATA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AAGTTCATATATACCCTAGTTAAAGCACTTAAGAAAATATGGCATGTTTGACTTTTAGTTCCTAGAGAGTTTTT 2960
Query 1 -------------------------ATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCGCGATCTCC 49
|.|||||||||||.||||.||||||||||||.|||.||||..||||||.
Sbjct 2961 GTTTTTGTTTTTGTTTTTTTTTGAGACGGAGTCTTGCTATGTCTCCCAGGCTGGAGGGCAGTGGCATGATCTCG 3034
Query 50 ACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGG 123
.||||||.||||.||..|.|.||.|||||||||.|||||||||.||||||||||.|||||||||||||||||||
Sbjct 3035 GCTCACTACAACTTCCACCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGG 3108
Query 124 TGCCCACCACCACAGCTGGCTAATTTTTGTATTTTTAGTAGAGACTGGGTTTTACCAT-ATTGGCCAGACTGGT 196
.|||||||||||||.|.|||..||||||||||||||.||||||||..|||||.|.||| .||||||||.|||||
Sbjct 3109 CGCCCACCACCACACCCGGCAGATTTTTGTATTTTTGGTAGAGACGCGGTTTCATCATGTTTGGCCAGGCTGGT 3182
Query 197 CTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACTG 270
||||||||||||||||||||||.|||||||||||||||.||||||||||.||||||||.|||..||||||||||
Sbjct 3183 CTCGAACTCCTGACCTCAGGTGATCCGCCTGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGCATGAGCCACTG 3256
Query 271 CGCCTGGCCA---------TT----------------------------------------------------- 282
|||||||||| ||
Sbjct 3257 CGCCTGGCCAGCTAGAGAGTTTTTAAAGCAGAGCTGAGCACACACTGGATGCGTTTGAATGTGTTTGTGTAGTT 3330
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3331 TGTTGTGAAATTGTTACATTTAGCAGGCAGATCCAGAAGCACTAGTGAACTGTCATCTTGGTGGGGTTGGCTTA 3404
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3405 AATTTAATTGACTGTTTAGATTCCATTTCTTAATTGATTGGCCAGTATGAAAAGATGCCAGTGCAAGTAACCAT 3478
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3479 AGTATCAAAAAAGTTAAAAATTATTCAAAGCTATAGTTTATACATCAGGTACTGCCATTTACTGTAAACCACCT 3552
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3553 GCAAGAAAGTCAGGAACAACTAAATTCACAAGAACTGTCCTGCTAAGAAGTGTATTAAAGATTTCCATTTTGTT 3626
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3627 TTACTAATTGGGAACATCTTAATGTTTAATATTTAAACTATTGGTATCATTTTTCTAATGTATAATTTGTATTA 3700
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3701 CTGGGATCAAGTATGTACAGTGGTGATGCTAGTAGAAGTTTAAGCCTTGGAAATACCACTTTCATATTTTCAGA 3774
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3775 TGTCATGGATTTAATGAGTAATTTATGTTTTTAAAATTCAGAATAGTTAATCTCTGATCTAAAACCATCAATCT 3848
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3849 ATGTTTTTTACGGTAATCATGTAAATATTTCAGTAATATAAACTGTTTGAAAAGGCTGCTGCAGGTAAACTCTA 3922
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3923 TACTAGGATCTTGGCCAAATAATTTACAATTCACAGAATATTTTATTTAAGGTGGTGCTTTTTTTTTTTGTCCT 3996
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3997 TAAAACTTGATTTTTCTTAACTTTATTCATGATGCCAAAGTAAATGAGGAAAAAAACTCAAAACCAGTTGAGTA 4070
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4071 TCATTGCAGACAAAACTACCAGTAGTCCATATTGTTTAATATTAAGTTGAATAAAATAAATTTTATTTCAGTCA 4144
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4145 GAGCCTAAATCACATTTTGATTGTCTGAATTTTTGATACTATTTTTAAAATCATGCTAGTGGCGGCTGGGCGTG 4218
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4219 GTAGCTCACGCCTGTAATCCCAGCATTTTGGGAGGCCGAAGTGGGTGGATCACGAGGTCGGGAGTTCGAGACCA 4292
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4293 GCTTGGCCAAAATGGTGAAACCCCATCTGTACTAAAAACTACAAAAATTAGCTGGGCGCGGTGGCAGGTGCCTG 4366
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4367 TAATCCCAGCTACCTGGGAGTCTGAGGCAGGAGAATTGCTTGAACCCTGGCGACAGAGGATGCAGTGAGCCAAG 4440
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4441 ATGGTGCCACTGTACTCCAGACTGGGCGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAATCATGCTAGT 4514
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4515 GCCAAGAGCTACTAAATTCTTAAAACCGGCCCATTGGACCTGTACAGATAAAAAATAGATTCAGTGCATAATCA 4588
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4589 AAATATGATAATTTTAAAATCTTAAGTAGAAAAATAAATCTTGATGTTTTAAATTCTTACGAGGATTCAATAGT 4662
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4663 TAATATTGATGATCTCCCGGCTGGGTGCAGTGGCTCACGCCTGTAATCCCAGCAGTTCTGGAGGCTGAGGTGGG 4736
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4737 CGAATCACTTCAGGCCAGGAGTTCAAGACCAGTCTGGGCAACATGGTGAAACCTCGTTTCTACTAAAAATACAA 4810
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4811 AAATTAGCCGGGCGTGGTTGCACACACTTGTAATCCCAGCTACTCAGGAGGCTAAGAATCGCATGAGCCTAGGA 4884
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4885 GGCAGAGGTTGCAGAGTGCCAAGGGCTCACCACTGCATTCCAGCCTGCCCAACAGAGTGAGACACTGTTTCTGA 4958
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4959 AAAAAAAAAATATATATATATATATATATATGTGTGTATATATATATGTATATATATATGACTTCCTATTAAAA 5032
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5033 ACTTTATCCCAGTCGGGGGCAGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCTGAGGCAGGTGGATCAC 5106
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5107 CTGAAGTCCGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAACTTAAG 5180
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5181 CCAGGTATGGTGGCGGGCACCTGTAATCCCAGTTACTTGGGAGGCTGAGGCAGGAGAATCGTTTAAACCCAGGA 5254
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5255 GGTGGAGGTTGCAGTGAGCTGAGATCGTGCCATTGCACTCTAGCCTGGGCAACAAGAGTAAAACTCCATCTTAA 5328
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5329 AGGTTTGTTTGTTTTTTTTTAATCCGGAAACGAAGAGGCGTTGGGCCGCTATTTTCTTTTTCTTTCTTTCTTTC 5402
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5403 TTTCTTTTTTTTTTTTTCTGAGACGGAGTCTAGCTCTGCTGCCCAGGCTGGAGTACAATGACACGATGTTGGCT 5476
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5477 CACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTACCTGGGATTACAGGCAC 5550
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5551 CTGCCACTACACCTGGCGAATATTTGTTTTTTTTAGTAGAGACGGGCTTTTACCATGTTAGGCTGGTCTCAAAC 5624
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5625 TCCTGACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGCAGGCCACCACACCCGG 5698
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5699 CCTTGGGCCACTGTTTTCAAAGTGAATTGTTTGTTGTATCGAGTCCTTAAGTATGGATATATATGTGACCCTAA 5772
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5773 TTAAGAACTACCAGATTGGATCAACTAATCATGTCAGCAATGTAAATAACTTTATTTTTCATATTCAAAATAAA 5846
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5847 AACTTTCTTTTATTTCTGGCCCCTTTATAACCAGCATCTTTTTGCTTTAAAAAATGACCTGGCTTTGTATTTTT 5920
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5921 TTAGTCTTAAACATAATAAAAATATTTTTGTTCTAATTTGCTTTCATGAGTGAAGATTATTGACATCGTTGGTA 5994
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5995 AATTCTAGAATTTTGATTTTGTTTTTTAATTTGAAGAAAATCTTTGCTATTATTATTTTTTCCAAGTGGTCTGG 6068
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6069 CATTTTAAGAATTAGTGCTAATAACGTAACTTCTAAATTTGTCGTAATTGGCATGTTTAATAGCATATCAAAAA 6142
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6143 ACATTTTAAGCCTGTGGATTCATAGACAAAGCAATGAGAAACATTAGTAAAATATAAATGGATATTCCTGATGC 6216
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6217 ATTTAGGAAGCTCTCAATTGTCTCTTGCATAGTTCAAGGAATGTTTTCTGAATTTTTTTAATGCTTTTTTTTTT 6290
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6291 TTTGAAAGAGGAAAACATACATTTTTAAATGTGATTATCTAATTTTTACAACACTGGGCTATTAGGAATAACTT 6364
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6365 TTTAAAAATTACTGTTCTGTATAAATATTTGAAATTCAAGTACAGAAAATATCTGAAACAAAAAGCATTGTTGT 6438
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6439 TTGGCCATGATACAAGTGCACTGTGGCAGTGCCGCTTGCTCAGGACCCAGCCCTGCAGCCCTTCTGTGTGTGCT 6512
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6513 CCCTCGTTAAGTTCATTTGCTGTTATTACACACACAGGCCTTCCTGTCTGGTCGTTAGAAAAGCCGGGCTTCCA 6586
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6587 AAGCACTGTTGAACACAGGATTCTGTTGTTAGTGTGGATGTTCAATGAGTTGTATTTTAAATATCAAAGATTAT 6660
Query 283 --------------------------- 282
Sbjct 6661 TAAATAAAGATAATGTTTGCTTTTCTA 6687
