Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13781
- Subject:
- NR_028457.2
- Aligned Length:
- 6943
- Identities:
- 245
- Gaps:
- 6661
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGGGGGCCGTTGGCTCCAGACAAATAAACATGGAGTCCATCTTCCACGAGAAACAAGAAGGCTCACTTTGTGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCAACATTGCCTGAATAACTTATTGCAAGGAGAATATTTTAGCCCTGTGGAATTATCCTCAATTGCACATCAGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGGATGAGGAGGAGAGGATGAGAATGGCAGAAGGAGGAGTTACTAGTGAAGATTATCGCACGTTTTTACAGCAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCTTCTGGAAATATGGATGACAGTGGTTTTTTCTCTATTCAGAAATGAAAGATCATTTATATGCAATTATAAGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AACACTGGTTTACAGTTAGAAAATTAGGAAAACAGTGGTTTAACTTGAATTCTCTCTTGACGGGTCCAGAATTA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATATCAGATACATATCTTGCACTTTTCTTGGCTCAATTACAACAGGAAGTCACTCAATGAGACGGCTCTTCCAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCTTACAATGGAGAAAGTGAGGCTCAGAGACTTTAAGTAACTTACCTTAGACGACTTTACTAGTAAGTTATTCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATATTTGTCGTTAAGGGTGATCTGCCAGATTGCGAAGCTGACCAACTCCTGCAGATGATTAGGGTCCAACAGAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCATCGACCAAAACTTATTGGAGAAGAATTAGCACAACTAAAAGAGCAAAGAGTCCATAAAACAGACCTGGAAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GAGTGTTAGAAGCAAATGATGGCTCAGGAATGTTAGACGAAGATGAGGAGGATTTGCAGAGGGCTCTGGCACTA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGTCGCCAAGAAATTGACATGGAAGATGAGGAAGCAGATCTCCGCAGGGCTATTCAGCTAAGTATGCAAGGTAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTCCAGAAACATATCTCAAGATATGACACAGACATCAGGTACAAATCTTACTTCAGAAGAGCTTCGGAAGAGAC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GAGAAGCCTACTTTGAAAATCACAACTCAGAAGTAGATGAAGGAAAATTCTGATCAGCTGACATCCTCTTAATA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CAGCAGCAAAAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGGGGGACCTATCAGGACAGAGTTCACATCCATG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGAAAGGCCAGCCACCAGTTCAGGAGCACTTGGGAGTGATCTAGGTGATGCTATGAGTGAAGAAGACATGCTTC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGGCAGCTGTGACCATGTCTTTAGAAACTGTCAGAAATGATTTGAAAACAGAAGGAAAAAAATAATACCTTTAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AAAATAATTTAGATATTCATACTTTCCAACATTATCCTGTGTGATTACAGCATAGGGTCCACTTTGGTAATGTG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TCAAAGAGATGAGGAAATAAGACTTTTAGCGGTTTGCAAACAAAATGATGGGAAAGTGGAACAATGCGTCGGTT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GTAGGACTAAATAATGATCTTCCAAATATTAGCCAAAGAGGCATTCAGCAATTAAAGACATTTAAAATAGTTTT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTAAATGTTTCTTTTTCTTTTTTGAGTGTGCAATATGTAACATGTCTAAAGTTAGGGCATTTTTCTTGGATCTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTTGCAGACTAGCTAATTAGCTCTCGCCTCAGGCTTTTTCCATATAGTTTGTTTTCTTTTTCTGTCTTGTAGGT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AAGTTGGCTCACATCATGTAATAGTGGCTTTCATTTCTTATTAACCAAATTAACCTTTCAGGAAAGTATCTCTA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CTTTCCTGATGTTGATAATAGTAATGGTTCTAGAAGGATGAACAGTTCTCCCTTCAACTGTATACCGTGTGCTC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CAGTGTTTTCTTGTGTTGTTTTCTCTGATCACAACTTTTCTGCTACCTGGTTTTCATTATTTTCCCACAATTCT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTTGAAAGATGGTAATCTTTTCTGAGGTTTAGCGTTTTAAGCCCTACGATGGGATCATTATTTCATGACTGGTG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CGTTCCTAAACTCTGAAATCAGCCTTGCACAAGTACTTGAGAATAAATGAGCATTTTTTAAAATGTGTGAGCAT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GTGCTTTCCCAGATGCTTTATGAATGTCTTTTCACTTATATCAAAACCTTACAGCTTTGTTGCAACCCCTTCTT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CCTGCGCCTTATTTTTTCCTTTCTTCTCCAATTGAGAAAACTAGGAGAAGCATAGTATGCAGGCAAGTCTCCTT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CTGTTAGAAGACTAAACATACGTACCCACCATGAATGTATGATACATGAAATTTGGCCTTCAATTTTAATAGCA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GTTTTATTTTATTTTTTCTCCTATGACTGGAGCTTTGTGTTCTCTTTACAGTTGAGTCATGGAATGTAGGTGTC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TGCTTCACATCTTTTAGTAGGTATAGCTTGTCAAAGATGGTGATCTGGAACATGAAAATAATTTACTAATGAAA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ATATGTTTAAATTTATACTGTGATTTGACACTTGCATCATGTTTAGATAGCTTAAGAACAATGGAAGTCACAGT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ACTTAGTGGATCTATAAATAAGAAAGTCCATAGTTTTGATAAATATTCTCTTTAATTGAGATGTACAGAGAGTT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TCTTGCTGGGTCAATAGGATAGTATCATTTTGGTGAAAACCATGTCTCTGAAATTGATGTTTTAGTTTCAGTGT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TCCCTATCCCTCATTCTCCATCTCCTTTTGAAGCTCTTTTGAATGTTGAATTGTTCATAAGCTAAAATCCAAGA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AATTTCAGCTGACAACTTCGAAAATTATAATATGGTATATTGCCCTCCTGGTGTGTGGCTGCACACATTTTATC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AGGGAAAGTTTTTTGATCTAGGATTTATTGCTAACTAACTGAAAAGAGAAGAAAAAATATCTTTTATTTATGAT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TATAAAATAGCTTTTTCTTCGATATAACAGATTTTTTAAGTCATTATTTTGTGCCAATCAGTTTTCTGAAGTTT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CCCTTACACAAAAGGATAGCTTTATTTTAAAATCTAAAGTTTCTTTTAATAGTTAAAAATGTTTCAGAAGAATT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ATAAAACTTTAAAACTGCAAGGGATGTTGGAGTTTAGTACTACTCCCTCAAGATTTAAAAAGCTAAATATTTTA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AGACTGAACATTTATGTTAATTATTACCAGTGTGTTTGTCATATTTTCCATGGATATTTGTTCATTACCTTTTT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CCATTGAAAAGTTACATTAAACTTTTCATACACTTGAATTGATGAGCTACCTAATATAAAAATGAGAAAACCAA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TATGCATTTTAAAGTTTTAACTTTAGAGTTTATAAAGTTCATATATACCCTAGTTAAAGCACTTAAGAAAATAT 3182
Query 1 -----------------------------------------------------------ATGGAGTCTTGCTCT 15
|.|||||||||||.|
Sbjct 3183 GGCATGTTTGACTTTTAGTTCCTAGAGAGTTTTTGTTTTTGTTTTTGTTTTTTTTTGAGACGGAGTCTTGCTAT 3256
Query 16 GTCACCCAGGCTGGAGTGCAATGGCGCGATCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTC 89
|||.||||||||||||.|||.||||..||||||..||||||.||||.||..|.|.||.|||||||||.||||||
Sbjct 3257 GTCTCCCAGGCTGGAGGGCAGTGGCATGATCTCGGCTCACTACAACTTCCACCTCCCGGGTTCAAGCAATTCTC 3330
Query 90 CTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCACCACCACAGCTGGCTAATTTTTGTATTTTTAGTA 163
|||.||||||||||.|||||||||||||||||||.|||||||||||||.|.|||..||||||||||||||.|||
Sbjct 3331 CTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCGCCCACCACCACACCCGGCAGATTTTTGTATTTTTGGTA 3404
Query 164 GAGACTGGGTTTTACCAT-ATTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTT 236
|||||..|||||.|.||| .||||||||.|||||||||||||||||||||||||||.|||||||||||||||.|
Sbjct 3405 GAGACGCGGTTTCATCATGTTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCTGCCTTGGCCT 3478
Query 237 CCCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCGCCTGGCCA---------TT------------------- 282
|||||||||.||||||||.|||..|||||||||||||||||||| ||
Sbjct 3479 CCCAAAGTGTTGGGATTACAGGCATGAGCCACTGCGCCTGGCCAGCTAGAGAGTTTTTAAAGCAGAGCTGAGCA 3552
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3553 CACACTGGATGCGTTTGAATGTGTTTGTGTAGTTTGTTGTGAAATTGTTACATTTAGCAGGCAGATCCAGAAGC 3626
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3627 ACTAGTGAACTGTCATCTTGGTGGGGTTGGCTTAAATTTAATTGACTGTTTAGATTCCATTTCTTAATTGATTG 3700
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3701 GCCAGTATGAAAAGATGCCAGTGCAAGTAACCATAGTATCAAAAAAGTTAAAAATTATTCAAAGCTATAGTTTA 3774
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3775 TACATCAGGTACTGCCATTTACTGTAAACCACCTGCAAGAAAGTCAGGAACAACTAAATTCACAAGAACTGTCC 3848
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3849 TGCTAAGAAGTGTATTAAAGATTTCCATTTTGTTTTACTAATTGGGAACATCTTAATGTTTAATATTTAAACTA 3922
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3923 TTGGTATCATTTTTCTAATGTATAATTTGTATTACTGGGATCAAGTATGTACAGTGGTGATGCTAGTAGAAGTT 3996
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3997 TAAGCCTTGGAAATACCACTTTCATATTTTCAGATGTCATGGATTTAATGAGTAATTTATGTTTTTAAAATTCA 4070
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4071 GAATAGTTAATCTCTGATCTAAAACCATCAATCTATGTTTTTTACGGTAATCATGTAAATATTTCAGTAATATA 4144
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4145 AACTGTTTGAAAAGGCTGCTGCAGGTAAACTCTATACTAGGATCTTGGCCAAATAATTTACAATTCACAGAATA 4218
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4219 TTTTATTTAAGGTGGTGCTTTTTTTTTTTGTCCTTAAAACTTGATTTTTCTTAACTTTATTCATGATGCCAAAG 4292
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4293 TAAATGAGGAAAAAAACTCAAAACCAGTTGAGTATCATTGCAGACAAAACTACCAGTAGTCCATATTGTTTAAT 4366
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4367 ATTAAGTTGAATAAAATAAATTTTATTTCAGTCAGAGCCTAAATCACATTTTGATTGTCTGAATTTTTGATACT 4440
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4441 ATTTTTAAAATCATGCTAGTGGCGGCTGGGCGTGGTAGCTCACGCCTGTAATCCCAGCATTTTGGGAGGCCGAA 4514
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4515 GTGGGTGGATCACGAGGTCGGGAGTTCGAGACCAGCTTGGCCAAAATGGTGAAACCCCATCTGTACTAAAAACT 4588
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4589 ACAAAAATTAGCTGGGCGCGGTGGCAGGTGCCTGTAATCCCAGCTACCTGGGAGTCTGAGGCAGGAGAATTGCT 4662
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4663 TGAACCCTGGCGACAGAGGATGCAGTGAGCCAAGATGGTGCCACTGTACTCCAGACTGGGCGACAGAGTGAGAC 4736
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4737 TCTGTCTCAAAAAAAAAAAAAAAATCATGCTAGTGCCAAGAGCTACTAAATTCTTAAAACCGGCCCATTGGACC 4810
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4811 TGTACAGATAAAAAATAGATTCAGTGCATAATCAAAATATGATAATTTTAAAATCTTAAGTAGAAAAATAAATC 4884
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4885 TTGATGTTTTAAATTCTTACGAGGATTCAATAGTTAATATTGATGATCTCCCGGCTGGGTGCAGTGGCTCACGC 4958
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4959 CTGTAATCCCAGCAGTTCTGGAGGCTGAGGTGGGCGAATCACTTCAGGCCAGGAGTTCAAGACCAGTCTGGGCA 5032
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5033 ACATGGTGAAACCTCGTTTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTTGCACACACTTGTAATCCCAGC 5106
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5107 TACTCAGGAGGCTAAGAATCGCATGAGCCTAGGAGGCAGAGGTTGCAGAGTGCCAAGGGCTCACCACTGCATTC 5180
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5181 CAGCCTGCCCAACAGAGTGAGACACTGTTTCTGAAAAAAAAAAATATATATATATATATATATATGTGTGTATA 5254
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5255 TATATATGTATATATATATGACTTCCTATTAAAAACTTTATCCCAGTCGGGGGCAGTGGCTCACGCCTGTAATC 5328
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5329 CCAACACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAAGTCCGGAGTTTGAGACCAGCCTGGCCAACATGGTG 5402
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5403 AAACCCCATCTCTACTAAAAATACAAAACTTAAGCCAGGTATGGTGGCGGGCACCTGTAATCCCAGTTACTTGG 5476
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5477 GAGGCTGAGGCAGGAGAATCGTTTAAACCCAGGAGGTGGAGGTTGCAGTGAGCTGAGATCGTGCCATTGCACTC 5550
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5551 TAGCCTGGGCAACAAGAGTAAAACTCCATCTTAAAGGTTTGTTTGTTTTTTTTTAATCCGGAAACGAAGAGGCG 5624
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5625 TTGGGCCGCTATTTTCTTTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTCTGAGACGGAGTCTAGCTCTGCT 5698
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5699 GCCCAGGCTGGAGTACAATGACACGATGTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTG 5772
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5773 CCTCAGCCTCCCAAGTACCTGGGATTACAGGCACCTGCCACTACACCTGGCGAATATTTGTTTTTTTTAGTAGA 5846
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5847 GACGGGCTTTTACCATGTTAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAG 5920
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5921 TGCTGGGATTACAGGTGCAGGCCACCACACCCGGCCTTGGGCCACTGTTTTCAAAGTGAATTGTTTGTTGTATC 5994
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5995 GAGTCCTTAAGTATGGATATATATGTGACCCTAATTAAGAACTACCAGATTGGATCAACTAATCATGTCAGCAA 6068
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6069 TGTAAATAACTTTATTTTTCATATTCAAAATAAAAACTTTCTTTTATTTCTGGCCCCTTTATAACCAGCATCTT 6142
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6143 TTTGCTTTAAAAAATGACCTGGCTTTGTATTTTTTTAGTCTTAAACATAATAAAAATATTTTTGTTCTAATTTG 6216
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6217 CTTTCATGAGTGAAGATTATTGACATCGTTGGTAAATTCTAGAATTTTGATTTTGTTTTTTAATTTGAAGAAAA 6290
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6291 TCTTTGCTATTATTATTTTTTCCAAGTGGTCTGGCATTTTAAGAATTAGTGCTAATAACGTAACTTCTAAATTT 6364
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6365 GTCGTAATTGGCATGTTTAATAGCATATCAAAAAACATTTTAAGCCTGTGGATTCATAGACAAAGCAATGAGAA 6438
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6439 ACATTAGTAAAATATAAATGGATATTCCTGATGCATTTAGGAAGCTCTCAATTGTCTCTTGCATAGTTCAAGGA 6512
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6513 ATGTTTTCTGAATTTTTTTAATGCTTTTTTTTTTTTTGAAAGAGGAAAACATACATTTTTAAATGTGATTATCT 6586
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6587 AATTTTTACAACACTGGGCTATTAGGAATAACTTTTTAAAAATTACTGTTCTGTATAAATATTTGAAATTCAAG 6660
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6661 TACAGAAAATATCTGAAACAAAAAGCATTGTTGTTTGGCCATGATACAAGTGCACTGTGGCAGTGCCGCTTGCT 6734
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6735 CAGGACCCAGCCCTGCAGCCCTTCTGTGTGTGCTCCCTCGTTAAGTTCATTTGCTGTTATTACACACACAGGCC 6808
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6809 TTCCTGTCTGGTCGTTAGAAAAGCCGGGCTTCCAAAGCACTGTTGAACACAGGATTCTGTTGTTAGTGTGGATG 6882
Query 283 ------------------------------------------------------------- 282
Sbjct 6883 TTCAATGAGTTGTATTTTAAATATCAAAGATTATTAAATAAAGATAATGTTTGCTTTTCTA 6943
